FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA4083.ptfa, 229 aa
 vs ./tmplib.26680 library

1768788 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.4868+/-0.00381; mu= 18.7289+/- 0.256
 mean_var=65.5210+/-14.575, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1584

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0517  ( 787 res)   mfj13077                   ( 787)  197   54 2.6e-08


>>mKIAA0517  ( 787 res)   mfj13077                        (787 aa)
 initn: 185 init1: 141 opt: 197  Z-score: 241.5  bits: 53.7 E(): 2.6e-08
Smith-Waterman score: 197;  34.127% identity (37.069% ungapped) in 126 aa overlap (34-157:656-773)

            10        20        30        40        50        60   
mKIAA4 RVSLRSPRPYGHTVKKYNSLGDLVQVLGTPGKKGTGLNPLQFDNPAELYVDDTGEMYIVD
                                     :..:.:    :: .:    :....:. :.:
mKIAA0 VDRNGHIIVVDNKACCVFIFQPNGKIVTRFGSRGNG--DRQFAGPHFAAVNSNNEIIITD
         630       640       650       660         670       680   

            70         80        90       100       110       120  
mKIAA4 GDGGLNNRLVKL-SQDFMILWLRGENGTGPAKFNIPHSVTLDAVGRVWVADRGNKRLQVF
           ..:. ::. .:.  ..   : :: : ..:: : .:..:. : . ::: ::.:.:::
mKIAA0 ----FHNHSVKVFNQEGEFMLKFGSNGEGNGQFNAPTGVAVDSNGNIIVADWGNSRIQVF
               690       700       710       720       730         

            130        140       150       160       170       180 
mKIAA4 DKDTGEWLGAWDNCFTE-EGPSAVRFTPDGKYLIVAQLNLSRLSVLLAPPSGSIGDCSVV
       :  .: .:.  ..      ::... .: :: ...::.                       
mKIAA0 D-GSGSFLSYINTSADPLYGPQGLALTSDG-HVVVADSGNHCFKVYRYLQ          
     740        750       760        770       780                 

             190       200       210       220         
mKIAA4 STIQLADQVLPHLLEVDRKTGAVYVAEIGAKQIQKYIPWHSRTPAFGA




229 residues in 1 query   sequences
1768788 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 11:01:20 2006 done: Mon Mar 27 11:01:20 2006
 Scan time:  0.460 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]