FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4084.ptfa, 626 aa vs ./tmplib.26680 library 1768391 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.7057+/-0.00398; mu= 21.9099+/- 0.267 mean_var=77.1418+/-17.246, 0's: 0 Z-trim: 7 B-trim: 0 in 0/36 Lambda= 0.1460 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0520 ( 1334 res) mbg16592 (1334) 349 84 1.1e-16 mKIAA0422 ( 391 res) mbh03531 ( 391) 314 76 9.2e-15 mKIAA4070 ( 645 res) mbg13014 ( 645) 239 60 6.9e-10 mKIAA1060 ( 1115 res) mbh01281 (1115) 171 46 1.9e-05 mKIAA0511 ( 1150 res) mbg03508 (1150) 171 46 1.9e-05 mKIAA4004 ( 422 res) mfj25198 ( 422) 162 44 4.2e-05 >>mKIAA0520 ( 1334 res) mbg16592 (1334 aa) initn: 404 init1: 123 opt: 349 Z-score: 392.1 bits: 83.8 E(): 1.1e-16 Smith-Waterman score: 349; 37.195% identity (39.103% ungapped) in 164 aa overlap (416-578:364-520) 390 400 410 420 430 440 mKIAA4 LRALEDEKKKTDTLLYSVLPPSVANELRHKRPVPAKRYDNVTILFSGIVGFNAFCSKHAS :: .. ..:.:::. :::: .: .. mKIAA0 ESENSVKRHATSSPKNRKKKSSIQKAPIAFRPFKMQQIEEVSILFADIVGF----TKMSA 340 350 360 370 380 450 460 470 480 490 500 mKIAA4 GEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSICHL ...: .:.:::::. ::: : .. : :. :.:: :. :.: ::: :: .. mKIAA0 NKSAHALVGLLNDLFGRFDRLCEQTKCE---KISTLGDCYYCVAGCPEPRADHAYCCIEM 390 400 410 420 430 440 510 520 530 540 550 560 mKIAA4 ALDMMEIAGQV-QVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGE .: :.. : : : :.. .:.::: :. :..:.: .. ...: :::.. : : mKIAA0 GLGMIKAIEQFCQEKKEMVNMRVGVHTGTVLCGILGMRRFKFDVWSNDVNLANLMEQLGV 450 460 470 480 490 500 570 580 590 600 610 620 mKIAA4 KGKINVSEYTYRCLMSPENSDPLFHLEHRGPVSMKGKKEPMQVWFLSRKNTGTEETNEED ::...:: : . : mKIAA0 AGKVHISEATAKYLDDRYEMEDGRVIERLGQSVVADQLKGLKTYLISGQRAKESHCSCAE 510 520 530 540 550 560 >>mKIAA0422 ( 391 res) mbh03531 (391 aa) initn: 284 init1: 151 opt: 314 Z-score: 357.4 bits: 75.6 E(): 9.2e-15 Smith-Waterman score: 343; 30.233% identity (32.911% ungapped) in 258 aa overlap (367-611:137-386) 340 350 360 370 380 390 mKIAA4 DDLTRRGLYLSDIPLHDATRDLVLLGEQFREEYKLTQELEILTDRLQLT--LRALEDEKK .. . : .:..: .:: : . .:. . mKIAA0 LDCPAVGRVALKYMTPVILLVFALALYLHAQQVESTARLDFLW-KLQATGEKEEMEELQA 110 120 130 140 150 160 400 410 420 430 440 mKIAA4 KTDTLLYSVLPPSVANEL--RHKR--PVPAKRYDNVTILFSGIVGFNAFCSK-HASGEGA . ::...:: .:: .. :..: . . . :...:..:..:. : . .:..:: mKIAA0 YNRRLLHNILPKDVAAHFLARERRNDELYYQSCECVAVMFASIANFSEFYVELEANNEG- 170 180 190 200 210 220 450 460 470 480 490 500 mKIAA4 MKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCI-----HHARSICH .. . :::.. . :: . . .. . :..:.:. ::..::: : .. mKIAA0 VECLRLLNEIIADFDEIISEERFRQLEKIKTIGSTYMAASGLNASTYDQVGRSHITALAD 230 240 250 260 270 280 510 520 530 540 550 560 mKIAA4 LALDMMEIAGQVQVDG-ESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTG :. .:: ... . .. :. ::.. : ::.:::: : :.: ..:::::..:: ..:: mKIAA0 YAMRLMEQMKHINEHSFNNFQMKIGLNMGPVVAGVIGARKPQYDIWGNTVNVSSRMDSTG 290 300 310 320 330 340 570 580 590 600 610 620 mKIAA4 EKGKINVSEYTYRCLMSPENSDPLFHLEHRGPVSMKGKKEPMQVWFLSRKNTGTEETNEE .:.:. :. : . ..:: :: :..::: : : ..::. mKIAA0 VPDRIQVTTDLYQVLAAKG-----YQLECRGVVKVKGKGE-MTTYFLNGGPSS 350 360 370 380 390 mKIAA4 DEN >>mKIAA4070 ( 645 res) mbg13014 (645 aa) initn: 325 init1: 178 opt: 239 Z-score: 269.9 bits: 60.1 E(): 6.9e-10 Smith-Waterman score: 362; 32.083% identity (35.160% ungapped) in 240 aa overlap (392-616:353-586) 370 380 390 400 410 mKIAA4 GEQFREEYKLTQELEILTDRLQLTLRALEDEKKKTDT--LLYSVLPPSVANELRHKRP-- :. : :. .:...:: ::... . : mKIAA4 TLALHARQVDVRLRLDYLWAAQAEEERDDMERVKLDNKRILFNLLPAHVAQHFLMSNPRN 330 340 350 360 370 380 420 430 440 450 460 470 mKIAA4 --VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFV . . :..: ..:..: .:: : . ... ... . :::.. . :: : :. . mKIAA4 MDLYYQSYSQVGVMFASIPNFNDFYIELDGNNMGVECLRLLNEIIADFDELMDKDFYKDL 390 400 410 420 430 440 480 490 500 510 520 mKIAA4 YKVETVGDKYMTVSGL-PEPCIHHARSI----CHLA---LDMMEIAGQVQVDG-ESVQIT :..:.:. ::.. :: : . .:: : :: .::... ... .. .. . mKIAA4 EKIKTIGSTYMAAVGLAPTAGTRAKKSISSHLCTLADFAIDMFDVLDEINYQSYNDFVLR 450 460 470 480 490 500 530 540 550 560 570 580 mKIAA4 IGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCLMSPENSDP .::..: ::.:::: : :.: ..:::::..:: ..:: .:.:.:.: ..: : mKIAA4 VGINVGPVVAGVIGARRPQYDIWGNTVNVASRMDSTGVQGRIQVTEEVHRLLKRCS---- 510 520 530 540 550 590 600 610 620 mKIAA4 LFHLEHRGPVSMKGKKEPMQVWFLSRKNTGTEETNEEDEN ... :: ::.::: : : ..:: .. :. mKIAA4 -YQFVCRGKVSVKGKGE-MLTYFLEGRTDGNSSHGRTFRLERRMCPYGRGGGQARRPPLC 560 570 580 590 600 610 >>mKIAA1060 ( 1115 res) mbh01281 (1115 aa) initn: 351 init1: 151 opt: 171 Z-score: 190.1 bits: 46.2 E(): 1.9e-05 Smith-Waterman score: 329; 31.429% identity (36.066% ungapped) in 210 aa overlap (389-578:257-459) 360 370 380 390 400 410 mKIAA4 VLLGEQFREEYKLTQELEILTDRLQLTLRALEDEKKKTDTLLYSVLPPSVANEL------ :: ::.. . :: :.:: .: :. mKIAA1 LAGAYHKHLMELALQQTYRDTCNCIKSRIKLEFEKRQQERLLLSLLPAHIAMEMKAEIIQ 230 240 250 260 270 280 420 430 440 450 mKIAA4 RHKRP-------------VPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDL : . : . .::. ::.::.. ::::. . : . :: .:..::.: mKIAA1 RLQGPKAGQMENTNNFHNLYVKRHTNVSILYADIVGFTRLASDCSPGE----LVHMLNEL 290 300 310 320 330 340 460 470 480 490 500 510 mKIAA4 YTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQ-V . .:: .. :. .... .:: :. ::::: .::.. ...::: : .:. . mKIAA1 FGKFDQIA---KENECMRIKILGDCYYCVSGLPISLPNHAKNCVKMGLDMCEAIKKVRDA 350 360 370 380 390 520 530 540 550 560 570 mKIAA4 DGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTGEKGKINVSEYTYRCL : .... .:.:.:.:. :::: . .: .... :.:... :. : :....: : . : mKIAA1 TGVDINMRVGVHSGNVLCGVIGLQKWQYDVWSHDVTLANHMEAGGVPGRVHISSVTLEHL 400 410 420 430 440 450 580 590 600 610 620 mKIAA4 MSPENSDPLFHLEHRGPVSMKGKKEPMQVWFLSRKNTGTEETNEEDEN mKIAA1 NGAYKVEEGDGEIRDPYLKQHLVKTYFVINPKGERRSPQHLFRPRHTLDGAKMRASVRMT 460 470 480 490 500 510 >>mKIAA0511 ( 1150 res) mbg03508 (1150 aa) initn: 409 init1: 153 opt: 171 Z-score: 190.0 bits: 46.2 E(): 1.9e-05 Smith-Waterman score: 345; 25.459% identity (29.042% ungapped) in 381 aa overlap (270-614:760-1129) 240 250 260 270 280 290 mKIAA4 NAIYRVLPQLQPGNCSLLSVFSLVRPHIDISFHGILSHINTVFVLRSKEGLLDVEKLECE .. ..:: : :..... .. . :: mKIAA0 LSCLQYYMGPYNMTAGMELDGGCMENPKYYNYVAVLSLIATIMLVQVSHMV----KLTLM 730 740 750 760 770 780 300 310 320 330 340 350 mKIAA4 DELTGAEISCLRLKGQMIYLPEADSILFLCSPSVM----NLDDLTRRGLYLSD-IPLHDA .::: .. : : . . : : : . : : ... :. :: .: .:: . mKIAA0 LLVTGA-VTALNLYAWCPVFDEYDHKRFQEKDSPMVALEKMQVLATPGLNGTDRLPLVPS 790 800 810 820 830 840 360 370 380 390 400 mKIAA4 TRDL-VLLGEQFREEYKLTQELEILTDRLQLTLRALEDEKKKT-------DTLLYSVLPP .. :.. .. : .....: :. : : ..:.:... ..:. ..:: mKIAA0 KYSMTVMMFVMMLSFYYFSRHVEKLARTLFLWKIEVHDQKERVYEMRRWNEALVTNMLPE 850 860 870 880 890 900 410 420 430 440 450 460 mKIAA4 SVANEL----RHKRPVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTR :: .. .. . . .. ::.. ..:... .: : .... ..:... . .::.. . mKIAA0 HVARHFLGSKKRDEELYSQSYDEIGVMFASLPNFADFYTEESINNGGIECLRFLNEIISD 910 920 930 940 950 960 470 480 490 500 mKIAA4 FDTLTDSRKNPFVYKVETVGDKYMTVSGL-PEPCIH-----------------HARSICH ::.: :. : . :..:.:. ::..::. :. . : .. mKIAA0 FDSLLDNPKFRVITKIKTIGSTYMAASGVTPDVNTNGFTSSSKEEKSDKERWQHLADLAD 970 980 990 1000 1010 1020 510 520 530 540 550 560 mKIAA4 LALDMMEIAGQVQVDG-ESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTETTG .:: : . ... .. .. .. ::.. : :..:::: : :.: ..:::::..:: :.:: mKIAA0 FALAMKDTLTNINNQSFNNFMLRIGMNKGGVLAGVIGARKPHYDIWGNTVNVASRMESTG 1030 1040 1050 1060 1070 1080 570 580 590 600 610 620 mKIAA4 EKGKINVSEYTYRCLMSPENSDPLFHLEHRGPVSMKGKKEPMQVWFLSRKNTGTEETNEE :.:.: : : : . :.. .:::. .::: : . ..::. .. mKIAA0 VMGNIQVVEETQVIL-----REYGFRFVRRGPIFVKGKGE-LLTFFLKGRDRPAAFPNGS 1090 1100 1110 1120 1130 mKIAA4 DEN mKIAA0 SVTLPHQVVDNP 1140 1150 >>mKIAA4004 ( 422 res) mfj25198 (422 aa) initn: 230 init1: 83 opt: 162 Z-score: 184.0 bits: 43.6 E(): 4.2e-05 Smith-Waterman score: 198; 28.440% identity (38.037% ungapped) in 218 aa overlap (313-509:198-381) 290 300 310 320 330 340 mKIAA4 VLRSKEGLLDVEKLECEDELTGAEISCLRLKGQMIYLPE--ADSILFLCSPSVMNLDDLT ..: ::. :...::::. : mKIAA4 PLGMRDAAAAGVISSLSHLLVLGLYLGWQPESQRALLPQLAANAVLFLCGNVV------- 170 180 190 200 210 220 350 360 370 380 390 400 mKIAA4 RRGLYLSDIPLHDATRDLVLLGEQFREEYKLTQELEILTDRLQLTLRALEDEKKKTDTLL : : : : :. . .: .. . : : .: : :. :::. . :: mKIAA4 --GAY------HKA-----LMERALRATFR--EALSSLHSR-----RRLDTEKKHQEHLL 230 240 250 260 410 420 430 440 mKIAA4 YSVLPPSVANELR-----------HKRP--------VPAKRYDNVTILFSGIVGFNAFCS :.:: .: :.. ..:: . .::...:..:.. ::::. . : mKIAA4 LSILPAYLAREMKAEIMARLQAGQRSRPENTNNFHSLYVKRHQGVSVLYADIVGFTRLAS 270 280 290 300 310 320 450 460 470 480 490 500 mKIAA4 KHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCIHHARS . . : .: .::.:. .:: .. :. .... .:: :. ::::: :: . mKIAA4 ECSPKE----LVLMLNELFGKFDQIA---KEHECMRIKILGDCYYCVSGLPLSLPDHAIN 330 340 350 360 370 510 520 530 540 550 560 mKIAA4 ICHLALDMMEIAGQVQVDGESVQITIGIHTGEVVTGVIGQRMPRYCLFGNTVNLTSRTET ...::: mKIAA4 CVRMGLDMCRAIRSALVCEQEKLRAPGVGEGVREAGWQSSWRRGESWQH 380 390 400 410 420 626 residues in 1 query sequences 1768391 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:01:21 2006 done: Mon Mar 27 11:01:22 2006 Scan time: 0.840 Display time: 0.130 Function used was FASTA [version 3.4t11 Apr 17, 2002]