FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4175.ptfa, 360 aa vs ./tmplib.26680 library 1768657 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.1400+/-0.00419; mu= 16.1900+/- 0.280 mean_var=76.8841+/-17.385, 0's: 0 Z-trim: 6 B-trim: 144 in 1/35 Lambda= 0.1463 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1072 ( 665 res) mbg06278 ( 665) 314 76 7.5e-15 mKIAA0015 ( 313 res) mpm11170 ( 313) 310 75 8.6e-15 mKIAA0606 ( 1318 res) mbg00108 (1318) 251 63 1.1e-10 mKIAA1157 ( 640 res) mid29003 ( 640) 127 36 0.0056 >>mKIAA1072 ( 665 res) mbg06278 (665 aa) initn: 344 init1: 152 opt: 314 Z-score: 359.0 bits: 75.9 E(): 7.5e-15 Smith-Waterman score: 401; 31.655% identity (34.921% ungapped) in 278 aa overlap (91-356:143-406) 70 80 90 100 110 mKIAA4 GKVAEIMQNDRLGGLDVLEAEFSKTWEFKSHNVAVYSIQGRRDHMEDR------FEVLTD .......:.. : .:::. :..: . mKIAA1 KLARSVFSKLHEICCSWVKDFPLRRRPQIYYETSIHAIKNMRRKMEDKHVCIPDFNMLFN 120 130 140 150 160 170 120 130 140 150 160 170 mKIAA4 LANKTHPSIFGIFDGHGGETAAEYVKSRLPEAL-KQHLQDYEKDKENSVLTYQTILEQQI : .. . . :..:::::: :: :.. .: : .:.. .. : .... :. . mKIAA1 LEDQEEQAYFAVFDGHGGVDAAIYASVHLHVNLVRQEMFPHDP-AEALCRAFRVTDERFV 180 190 200 210 220 230 180 190 200 210 220 230 mKIAA4 LSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKP . :: :. ::: ..... . : :: ::::. .: : :.:. : . ::: mKIAA1 QKAARESLR--------CGTTGVVTFIRGNMLHVAWVGDSQVMLVRK-GQAVELMKPHKP 240 250 260 270 280 240 250 260 270 280 290 mKIAA4 YQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQ . :..::. :: . . :.:::.: :..::..:: : . : : . :: . mKIAA1 DREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPY--ICGDADSASTVLDGTE 290 300 310 320 330 340 300 310 320 330 340 mKIAA4 PEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSIVLQSFYR-----GCPDNITVMV ...::: ::..:. . .:::. ....: : . : .:.: ... : :::::.: mKIAA1 -DYLILACDGFYDTVNPDEAVKVVSDHLKENN-GDSSMVAHKLVASARDAGSSDNITVIV 350 360 370 380 390 350 360 mKIAA4 VKFRNSSKTEEH : .:. .:. mKIAA1 VFLRDMNKAVNVSEESEWTENSFQGGQEDGGDDKETHGECKRPWPQHQCSAPADLGYEGR 400 410 420 430 440 450 >>mKIAA0015 ( 313 res) mpm11170 (313 aa) initn: 328 init1: 159 opt: 310 Z-score: 357.9 bits: 74.6 E(): 8.6e-15 Smith-Waterman score: 386; 31.734% identity (34.818% ungapped) in 271 aa overlap (93-352:15-272) 70 80 90 100 110 mKIAA4 VAEIMQNDRLGGLDVLEAEFSKTWEFKSHNVAVYSIQGRRDHMEDR------FEVLTDLA :....:.. : .:::: :. : :. mKIAA0 QVPLTAQAPQWQWLVSIHAIRNTRRKMEDRHVSLPAFNHLFGLS 10 20 30 40 120 130 140 150 160 170 mKIAA4 NKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQHLQDYEKDKENSVLTYQTILEQQILSI ...: . :..:::::: ::.:.. :.. . . . . . :.. . mKIAA0 DSVHRAYFAVFDGHGGVDAARYASV--------HVHTNASHQPELRTNPAAALKEAFRLT 50 60 70 80 90 180 190 200 210 220 230 mKIAA4 DREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQL :. .:.: ..::: . ::.. : :: .:::. .: .. : .. : . ::: . mKIAA0 DEMFLQKAKRERLQSGTTGVCALIAGAALHVAWLGDSQVILVQQ-GRVVKLMEPHKPERQ 100 110 120 130 140 150 240 250 260 270 280 290 mKIAA4 KERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEF :. ::. :::.:. :::.: ::.::..:: : : . : . .: . .. mKIAA0 DEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPY--VSGEADAASRELTGSE-DY 160 170 180 190 200 210 300 310 320 330 340 350 mKIAA4 MILASDGLWDAFSNEEAVRFIKERLDEPHFG-----AKSIVLQSFYRGCPDNITVMVVKF ..:: ::..:. ..:.. ... .: . : : :. .: . :: :::::::: . mKIAA0 LLLACDGFFDVVPHHEVTGLVHGHLLR-HKGNGMRIAEELVAVARDRGSHDNITVMVVFL 220 230 240 250 260 270 360 mKIAA4 RNSSKTEEH :. mKIAA0 REPLELLEGGVQGTGDAQADVGSQDLSTGLSELEISNTSQRS 280 290 300 310 >>mKIAA0606 ( 1318 res) mbg00108 (1318 aa) initn: 226 init1: 90 opt: 251 Z-score: 283.9 bits: 63.0 E(): 1.1e-10 Smith-Waterman score: 287; 28.696% identity (30.137% ungapped) in 230 aa overlap (122-351:791-1009) 100 110 120 130 140 150 mKIAA4 NVAVYSIQGRRDHMEDRFEVLTDLANKTHPSIFGIFDGHGGETAAEYVKSRLPEALKQHL ...:.::: . . .. . . : ..: mKIAA0 WSHGYTEASGVKNKLCVAALSVNNFRDNREALYGVFDGDRNVEVPYLLQCTMSDILAEEL 770 780 790 800 810 820 160 170 180 190 200 210 mKIAA4 QDYEKDKENSVLTYQTILEQQILSIDREMLEKLTVSYDEAGTTCLIALLSDKDLTVANVG : ....: : :. ...... . ... .. . . . : .. :: :::: mKIAA0 QKTKNEEEYMVNTF-IVMQRKLGTAGQKLGGAAVLCHIKPDP---VDLGGSFTLTSANVG 830 840 850 860 870 220 230 240 250 260 270 mKIAA4 DSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYP . ::: ..:. . ::... .::::::. ..:. .: .:.:. .: :: : mKIAA0 KCQTVLC-RNGKPLSLSRSYIMSCEEERKRIKQHKAIITEDG--KVNGVTESTRILG-YT 880 890 900 910 920 930 280 290 300 310 320 330 mKIAA4 LKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIKERLDEPHFGAKSI . . .:: : : . . : : ::.::.: ::::..: .:::. ... : . : mKIAA0 FLHPSVV-PRPHVQSVLLTP-QDEFFILGSKGLWDSLSIDEAVEAVRNVPDALAAAKKLC 940 950 960 970 980 990 340 350 360 mKIAA4 VLQSFYRGCPDNITVMVVKFRNSSKTEEH .: . : :: :.:...::.. mKIAA0 TLAQSY-GCHDSISAVVVQLSVTEDSFCCCELSAGGSMPPPSPGIFPPSVNMVIKDRPSD 1000 1010 1020 1030 1040 >>mKIAA1157 ( 640 res) mid29003 (640 aa) initn: 236 init1: 91 opt: 127 Z-score: 145.9 bits: 36.4 E(): 0.0056 Smith-Waterman score: 174; 26.250% identity (37.725% ungapped) in 240 aa overlap (169-339:371-606) 140 150 160 170 180 190 mKIAA4 VKSRLPEALKQHLQDYEKDKENSVLTYQTILEQQILSIDREMLEKLTVSYD-EAGTTCLI ::. . .: .. :. .:. .: : :: mKIAA1 GVGAPGSPSTPPTRFFTEKKIPHECLVIGALESAFKEMDLQI-ERERSAYNISGGCTALI 350 360 370 380 390 200 210 220 230 mKIAA4 ALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKER------------------ .. : :::.::::... ..:. ::.: . : ..: mKIAA1 VVCLLGKLYVANAGDSRAIII-RNGEIIPMSSEFTPETERQRLQYLAFMQPHLLGNEFTH 400 410 420 430 440 450 240 250 260 mKIAA4 ----KRIKRA--GG---FISFNGS-W----------------------RVQGILAMSRSL .:..: : . .:: . : ::.. ....:.: mKIAA1 LEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDDDLKFPLIYGEGKKARVMATIGVTRGL 460 470 480 490 500 510 270 280 290 300 310 mKIAA4 GDYPLK--NLNVVIPD-----PDILTFDLDKLQ---PEFMILASDGLWDAFSNEEAVRFI ::. :: . :. : :.. ..::.. . . .:::.:::::..::::... : mKIAA1 GDHDLKVHDSNIYIKPFLSSAPEVRVYDLSRYEHGADDVLILATDGLWDVLSNEEVAEAI 520 530 540 550 560 570 320 330 340 350 360 mKIAA4 KERL-----DEPH---FGAKSIVLQSFYRGCPDNITVMVVKFRNSSKTEEH . : :.:: ..:...:... :: mKIAA1 TQFLPNCDPDDPHRYTLAAQDLVMRA--RGVLKDRGWRISNDRLGSGDDISVYVIPLIHG 580 590 600 610 620 630 360 residues in 1 query sequences 1768657 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:04:08 2006 done: Mon Mar 27 11:04:08 2006 Scan time: 0.600 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]