FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA4189.ptfa, 953 aa vs ./tmplib.26680 library 1768064 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.5411+/-0.00517; mu= 14.8991+/- 0.346 mean_var=127.8606+/-29.055, 0's: 0 Z-trim: 1 B-trim: 0 in 0/36 Lambda= 0.1134 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1267 ( 1036 res) mbg05084 (1036) 655 119 2.8e-27 >>mKIAA1267 ( 1036 res) mbg05084 (1036 aa) initn: 938 init1: 255 opt: 655 Z-score: 582.1 bits: 119.2 E(): 2.8e-27 Smith-Waterman score: 849; 30.256% identity (36.510% ungapped) in 899 aa overlap (104-926:137-957) 80 90 100 110 120 130 mKIAA4 HFASPQASKHFQTVLLMSSNSTLNKYNENYNQKKVMESNCSKLKNVLCNGSSIQLSKICP : . . :. . : .. :: . .:.: mKIAA1 VLKSHPLLSQSYELRAELLGRQPVLEFSLENLRTMNTSGQTALPQAPVNGLAKKLTK-SS 110 120 130 140 150 160 140 150 160 170 180 mKIAA4 SHSENE---FIKKELSDTTSQCMKDIQI------VLDSNLTKDTNVDR-LHLQNCKWYQK .::... .. . ::. .. .. : ...:. : : : .:. :.. mKIAA1 THSDHDNSSSLNGGKRSLTSSSLQGGEVGGPDSGNLKGGMTNCTLPHRSLDIQHTTLYSN 170 180 190 200 210 220 190 200 210 220 230 mKIAA4 NALLDKFTDTKIKKGLLQCTQKKIGPSHS----------DVPTS--SSAAEKEEEVNARL :. .: . ... . :: ... ..:: . .: : :: . . ..:. mKIAA1 NSTANKSSVNSMDQPALQGSSR-LSPSTDSSSNLTNVKLEVKKSPLSSILFSALDSDTRI 230 240 250 260 270 280 240 250 260 270 280 290 mKIAA4 LHCVSKQKILLSQARRTQKHLQMLLAKHVVKHYGQQMKFSMKHQLPTMKIFHEPTTVLSN . .: . .::: ::.::.. ::.: .: .:. .. : . .. .. : mKIAA1 TALLRRQADIEIRARRLQKRLQVVQAKQVERHLQHQLGGFLETTLSKLPNLE---SLRSR 290 300 310 320 330 340 300 310 320 330 340 mKIAA4 SLLEHTEIKPEVNI--LASENKFWDDTNNGF-SQCTAAEIQRFALSATGLLSHVEEGLDS : : :. : :. . :::. . .: . :. . :..::. :. . : :...:: mKIAA1 SQLMLTR-KAEAALRKAASESATSEGLSNFLKSDSISEELERFTASGIANLRCSEQAFDS 350 360 370 380 390 400 350 360 370 380 390 400 mKIAA4 DATDSSSDDEVD---EYTIRKN-----VAVNSSTEWKWLVDRAQVGSRWTWLQAQISELE :.::::: : : : : . : .. .::.: .::: . :::.::::..:.:: mKIAA1 DVTDSSSGGESDIEEEELTRADPEQCHVPLKRRSEWRWAADRAAIVSRWNWLQAHVSDLE 410 420 430 440 450 460 410 420 430 440 450 460 mKIAA4 YKIQQLTDIHRQIRASKGIVILEECQLPKDILKKQIQFSNQAVSLNTSVNSQVPQRSEEP :.:.: :::..::::.::...: : .: . ... .::.. :... .... mKIAA1 YRIRQQTDIYKQIRANKGLIVLGEAPFP--------DHTTDLLSLSSEVKTD---HGRDK 470 480 490 500 470 480 490 500 510 520 mKIAA4 LPEHDFEMSPSSPTLLLRNIEKQSAQLTEIINSLIAPLNLSPTSSPLSSKSCSHKCLANG : : : :.:. :... ...: .:: :.:::. .:: mKIAA1 LIE-----SVSQPS------ENHGILVSNITESL-------------STKSCGAPRPVNG 510 520 530 540 530 540 550 560 570 mKIAA4 ISRSASENL-DELSSSSSWLLNQKHSKKRRKDRTRLKSPSLAIMSTAARTRPLQSFHKRK . : . : :.. ..:: .: : .:.: : : : . .::::::. . .::. mKIAA1 VVNSLQPVLADQVPGDSSDAEEQLH----KKQRLNLVSSSDGT-CVAARTRPVLTCKKRR 550 560 570 580 590 600 580 590 600 610 620 630 mKIAA4 LYRLS---PTFYWTPETLPSKEAFLSSTQTPYTGSPFSWDNWEQSSRSHLLREQVSKLDS : : : : . ... : : .:: . : .. :: :..:.::: mKIAA1 LVRPSSIVPLSKKVHRNVRSGCDVNPSCALCGSGSVNTMPP-EIHYEAPLL-ERLSQLDS 610 620 630 640 650 640 650 660 670 680 mKIAA4 SFHPVLSLPSEIPLHLHFETLFK-----------KTDMKGELAENQFVGDCLISPPPAGE ::::..:...: :::....: : : : ... . : .: : . mKIAA1 CVHPVLAFPDDVPTSLHFQSMLKSQWQNKPFDKIKPTKKFSL-KHRATMPCSLSDPVRKD 660 670 680 690 700 710 690 700 710 720 mKIAA4 RTR----FEEFAF--QRSEPGSHCNFTA---------VSNANVTSRTQNPSSQ------N : . : :. .... .: .:: : . ...: :..:.:. . mKIAA1 RHKLVNSFLTTAMLKHHTDMSSPSYLTATHHPPHSPLVRQLSTSSDTSTPTSSGSQVAAS 720 730 740 750 760 770 730 740 750 760 770 mKIAA4 TSR--RRLRSESSYDIDNIVIPMSLVAPAKLEKLQYKEILTPRWRKVVLQPL----DEHN ::. :: :.:::.::.:::::::..: ...::::::::::: ::.: .: : ::.: mKIAA1 TSQPVRRRRGESSFDINNIVIPMSVAATTRVEKLQYKEILTPSWREVDVQSLKGSPDEEN 780 790 800 810 820 830 780 790 800 810 820 830 mKIAA4 LNKEEIEDLSDDVFSLRHRKYEEREQARWSLWEQS-KWHRRNNRAYSKNVEGQDLVLKEH :::::::: .:. : : :: :.::: :: : .::..:.: .. .:. mKIAA1 ---EEIEDLSDAAFAALHAKCEEMERARW-LWTTSVPPQRRGSRSY-RSSDGRT------ 840 850 860 870 880 840 850 860 870 880 890 mKIAA4 SSELGSAQQGTAESPFELAAESHSLCAQDSLSLNDGQEDKSLRWERRAFPLKDEDTAALL . .::::. .: . .. :::: .. :: .: :.. : .: : mKIAA1 TPQLGSANPSTPQPASPDVSSSHSLSE-----FSHGQSPRS--------PISPELHSAPL 890 900 910 920 930 900 910 920 930 940 950 mKIAA4 CQDERKDQTGGASTAFHDEVFCSTTPESGHPPKMQLDGMEEYKSFGIGVTNVKRNR : . :: ... ::: :: : mKIAA1 TPVARDSLRHLAS----EDTRCST-PELGLDEQSVQPWERRTFPLAYSPQAECEEQLDAQ 940 950 960 970 980 953 residues in 1 query sequences 1768064 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 11:04:31 2006 done: Mon Mar 27 11:04:32 2006 Scan time: 1.010 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]