FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0367.ptfa, 354 aa
 vs ./tmplib.26680 library

1768663 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.3725+/-0.00497; mu= 11.9626+/- 0.333
 mean_var=108.7307+/-24.253, 0's: 0 Z-trim: 1  B-trim: 0 in 0/36
 Lambda= 0.1230

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1872  ( 420 res)   mfj43296                   ( 420) 1232  229 4.4e-61


>>mKIAA1872  ( 420 res)   mfj43296                        (420 aa)
 initn: 1109 init1: 791 opt: 1232  Z-score: 1188.9  bits: 228.8 E(): 4.4e-61
Smith-Waterman score: 1232;  59.133% identity (63.455% ungapped) in 323 aa overlap (19-329:72-384)

                           10        20        30        40        
mKIAA0             SARTAHLSVPLASKPPVTLRRPPSEDEGMDIHFEEGVLSPSAADMRPE
                                     : ::  :: :  ..   :..  :..     
mKIAA1 PLLFPALMGTTEATLRMENVDVRDEWQDEDLPRPLPEDTG--VERLGGAVEDSSS-----
              50        60        70        80          90         

       50        60        70        80        90       100        
mKIAA0 PPNSLDLNGSHPRRIKLTAPNINLSLDQSEGSILSDDNLDSPDEIDINVDELDTPDEADS
       ::..:.:.:.: .:  :.::.::.::::::::.:::: ::.::..:::::...::::.::
mKIAA1 PPSTLNLSGAHRKRKTLVAPEINISLDQSEGSLLSDDFLDTPDDLDINVDDIETPDETDS
          100       110       120       130       140       150    

      110                 120       130       140        150       
mKIAA0 FEYTNH------ED--P--TANKSSGQESESIPEYTAEEEREDN-RLWRTVVIGEQEQRI
       .:. ..      ::  :  ::..  :. .. . . .::.    : ::::::.:::::.::
mKIAA1 LEFLGNGNELEWEDDTPVATAKNMPGDSADLFGDGSAEDGSAANGRLWRTVIIGEQEHRI
          160       170       180       190       200       210    

       160       170       180       190       200       210       
mKIAA0 DMKVIEPYRRVISHGGDSGYYGDGLNAIIVFAACFLPDSSRADYHYVMENLFLYVISTLE
       :...:.:: .:..:::   :::.:::::::::::::::::  ::::.::::::::::.::
mKIAA1 DLHMIRPYMKVVTHGG---YYGEGLNAIIVFAACFLPDSSSPDYHYIMENLFLYVISSLE
          220       230          240       250       260       270 

       220       230       240       250       260       270       
mKIAA0 LMVAEDYMIVYLNGATPRRKMPGLGWMKKCYQMIDRRLRKNLKSFIIVHPSWFIRTILAV
       :.:::::::::::::::::.:::.::.::::.::::::::::::.:::::::::::.::.
mKIAA1 LLVAEDYMIVYLNGATPRRRMPGIGWLKKCYHMIDRRLRKNLKSLIIVHPSWFIRTVLAI
             280       290       300       310       320       330 

       280       290       300       310       320        330      
mKIAA0 TRPFISSKFSSKIKYVTSLSELSGLIPMDCIHIPESIIKLDEE-LREASEAAKTSCLYND
       .::::: :: :::.:: :: ::  ::::. ...:. ... .:. ::   :...       
mKIAA1 SRPFISVKFISKIQYVHSLEELERLIPMEHVQLPDCVLQYEEQRLRAKRESTRPPQPEFL
             340       350       360       370       380       390 

        340       350               
mKIAA0 PEMSSMEKDIDMKLKEKP           
                                    
mKIAA1 LPRSEEKPETVEEEDRAAEATEDQETSMS
             400       410       420




354 residues in 1 query   sequences
1768663 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:18:59 2006 done: Mon Mar 27 10:18:59 2006
 Scan time:  0.570 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]