# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj00027.fasta.nr -Q ../query/mKIAA1878.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA1878, 311 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7912040 sequences
Expectation_n fit: rho(ln(x))= 6.2026+/-0.000199; mu= 3.7793+/- 0.011
mean_var=120.7069+/-22.673, 0's: 37 Z-trim: 52 B-trim: 0 in 0/66
Lambda= 0.116737
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 37, opt: 25, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|31418674|gb|AAH53039.1| Microtubule-associated ( 568) 2174 377.1 4.1e-102
gi|205830863|sp|Q7TSJ2.2|MAP6_MOUSE RecName: Full= ( 906) 2174 377.3 5.8e-102
gi|3171934|emb|CAA75930.1| neuronal-STOP protein [ ( 906) 2169 376.5 1e-101
gi|2769587|emb|CAA75049.1| STOP protein [Mus muscu ( 906) 2166 376.0 1.5e-101
gi|81863336|sp|Q63560.1|MAP6_RAT RecName: Full=Mic ( 952) 1903 331.7 3.3e-88
gi|3287265|emb|CAA05555.1| E-STOP protein [Rattus ( 660) 1897 330.5 5.1e-88
gi|50925501|gb|AAH78848.1| Mtap6 protein [Rattus n ( 667) 1897 330.6 5.1e-88
gi|149068862|gb|EDM18414.1| rCG39515, isoform CRA_ ( 952) 1897 330.7 6.6e-88
gi|114520594|ref|NP_001036820.2| microtubule-assoc ( 306) 1549 271.6 1.3e-70
gi|3171936|emb|CAA75989.1| F-STOP protein [Mus mus ( 306) 1544 270.8 2.3e-70
gi|152012806|gb|AAI50255.1| Microtubule-associated ( 439) 887 160.3 6.1e-37
gi|119595387|gb|EAW74981.1| hCG1816277 [Homo sapie ( 302) 882 159.3 8.3e-37
gi|48375167|ref|NP_997460.1| microtubule-associate ( 439) 882 159.4 1.1e-36
gi|39795300|gb|AAH63860.1| MAP6 protein [Homo sapi ( 723) 882 159.6 1.6e-36
gi|205830862|sp|Q96JE9.2|MAP6_HUMAN RecName: Full= ( 813) 882 159.7 1.7e-36
gi|109107974|ref|XP_001086367.1| PREDICTED: simila ( 440) 867 156.9 6.3e-36
gi|114639438|ref|XP_001175009.1| PREDICTED: microt ( 441) 865 156.6 8e-36
gi|109107972|ref|XP_001086478.1| PREDICTED: simila ( 792) 867 157.2 9.6e-36
gi|55636659|ref|XP_508647.1| PREDICTED: microtubul ( 815) 865 156.8 1.2e-35
gi|76636123|ref|XP_870004.1| PREDICTED: similar to ( 815) 817 148.7 3.4e-33
gi|73988137|ref|XP_534007.2| PREDICTED: similar to ( 763) 813 148.0 5.1e-33
gi|82070362|sp|O73737.1|MAP6_CHICK RecName: Full=M ( 369) 417 81.1 3.6e-13
gi|148684428|gb|EDL16375.1| microtubule-associated ( 208) 398 77.6 2.2e-12
gi|205830850|sp|B0S4Q5.1|MAP6_XENTR RecName: Full= ( 378) 396 77.5 4.3e-12
gi|47210176|emb|CAF90592.1| unnamed protein produc ( 394) 327 65.9 1.4e-08
gi|223648086|gb|ACN10801.1| MAP6 domain-containing ( 394) 326 65.8 1.6e-08
gi|125828039|ref|XP_001336546.1| PREDICTED: im:713 ( 452) 317 64.3 4.9e-08
gi|189528809|ref|XP_001921239.1| PREDICTED: mediat ( 381) 313 63.6 6.9e-08
gi|47223781|emb|CAF98551.1| unnamed protein produc ( 279) 308 62.6 9.9e-08
gi|194181272|gb|EDW94883.1| AGO2 [Drosophila yakub (1173) 244 52.4 0.00049
gi|109095693|ref|XP_001083764.1| PREDICTED: hypoth ( 495) 230 49.7 0.0013
gi|28317062|gb|AAO39550.1| RE04347p [Drosophila me (1214) 229 49.9 0.0029
gi|51316118|sp|Q9VUQ5.3|AGO2_DROME RecName: Full=P (1214) 225 49.2 0.0046
gi|23093414|gb|AAF49620.2| argonaute 2, isoform C (1217) 225 49.2 0.0046
gi|133915707|emb|CAM05820.1| hypothetical protein ( 904) 221 48.4 0.006
>>gi|31418674|gb|AAH53039.1| Microtubule-associated prot (568 aa)
initn: 2174 init1: 2174 opt: 2174 Z-score: 1989.5 bits: 377.1 E(): 4.1e-102
Smith-Waterman score: 2174; 100.000% identity (100.000% similar) in 311 aa overlap (1-311:121-431)
10 20 30
mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER
::::::::::::::::::::::::::::::
gi|314 TVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER
100 110 120 130 140 150
40 50 60 70 80 90
mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|314 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
160 170 180 190 200 210
100 110 120 130 140 150
mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|314 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
220 230 240 250 260 270
160 170 180 190 200 210
mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|314 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
280 290 300 310 320 330
220 230 240 250 260 270
mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|314 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE
340 350 360 370 380 390
280 290 300 310
mKIAA1 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYR
:::::::::::::::::::::::::::::::::::::::::
gi|314 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKP
400 410 420 430 440 450
gi|314 QYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIRSLYSEPFKECPKVEKPSVQS
460 470 480 490 500 510
>>gi|205830863|sp|Q7TSJ2.2|MAP6_MOUSE RecName: Full=Micr (906 aa)
initn: 2174 init1: 2174 opt: 2174 Z-score: 1986.9 bits: 377.3 E(): 5.8e-102
Smith-Waterman score: 2174; 100.000% identity (100.000% similar) in 311 aa overlap (1-311:121-431)
10 20 30
mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER
::::::::::::::::::::::::::::::
gi|205 TVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER
100 110 120 130 140 150
40 50 60 70 80 90
mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|205 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
160 170 180 190 200 210
100 110 120 130 140 150
mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|205 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
220 230 240 250 260 270
160 170 180 190 200 210
mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|205 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
280 290 300 310 320 330
220 230 240 250 260 270
mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|205 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE
340 350 360 370 380 390
280 290 300 310
mKIAA1 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYR
:::::::::::::::::::::::::::::::::::::::::
gi|205 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKP
400 410 420 430 440 450
gi|205 QYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIRSLYSEPFKECPKVEKPSVQS
460 470 480 490 500 510
>>gi|3171934|emb|CAA75930.1| neuronal-STOP protein [Mus (906 aa)
initn: 2169 init1: 2169 opt: 2169 Z-score: 1982.3 bits: 376.5 E(): 1e-101
Smith-Waterman score: 2169; 99.678% identity (100.000% similar) in 311 aa overlap (1-311:121-431)
10 20 30
mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER
::::::::::::::::::::::::::::::
gi|317 TVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER
100 110 120 130 140 150
40 50 60 70 80 90
mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|317 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
160 170 180 190 200 210
100 110 120 130 140 150
mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|317 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
220 230 240 250 260 270
160 170 180 190 200 210
mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|317 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
280 290 300 310 320 330
220 230 240 250 260 270
mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE
:::::::::::::.::::::::::::::::::::::::::::::::::::::::::::::
gi|317 AGPAWMVTRTEGHKETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE
340 350 360 370 380 390
280 290 300 310
mKIAA1 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYR
:::::::::::::::::::::::::::::::::::::::::
gi|317 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKP
400 410 420 430 440 450
gi|317 QYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIRSLYSEPFKECPKVEKPSVQS
460 470 480 490 500 510
>>gi|2769587|emb|CAA75049.1| STOP protein [Mus musculus] (906 aa)
initn: 2166 init1: 2166 opt: 2166 Z-score: 1979.6 bits: 376.0 E(): 1.5e-101
Smith-Waterman score: 2166; 99.678% identity (100.000% similar) in 311 aa overlap (1-311:121-431)
10 20 30
mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER
::::::::::::::::::::::::::::::
gi|276 TVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER
100 110 120 130 140 150
40 50 60 70 80 90
mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|276 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
160 170 180 190 200 210
100 110 120 130 140 150
mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|276 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
220 230 240 250 260 270
160 170 180 190 200 210
mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|276 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
280 290 300 310 320 330
220 230 240 250 260 270
mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|276 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE
340 350 360 370 380 390
280 290 300 310
mKIAA1 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYR
::::::::::::::.::::::::::::::::::::::::::
gi|276 QTPAAHAQGTGPEGSKGRAVADALNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKP
400 410 420 430 440 450
gi|276 QYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIRSLYSEPFKECPKVEKPSVQS
460 470 480 490 500 510
>>gi|81863336|sp|Q63560.1|MAP6_RAT RecName: Full=Microtu (952 aa)
initn: 1899 init1: 1899 opt: 1903 Z-score: 1739.9 bits: 331.7 E(): 3.3e-88
Smith-Waterman score: 2015; 84.594% identity (86.275% similar) in 357 aa overlap (1-311:121-477)
10 20 30
mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER
::::::::::::::::::::::::::::::
gi|818 TAAAPGRSGLGLGAASGSTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER
100 110 120 130 140 150
40 50 60 70 80 90
mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
::::::::::::::::::::::::::::::::::: ::::.::::::::::::.::::::
gi|818 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSPPVLGMPKRRPQSQERGPIQLSADA
160 170 180 190 200 210
100 110 120 130 140 150
mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
::::::::::: :::::::.:::::::::::::::::.::::::::::::::::::::::
gi|818 RDPEGAGGAGVPAAGKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAA
220 230 240 250 260 270
160 170 180 190 200 210
mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
gi|818 GKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
280 290 300 310 320 330
220 230 240
mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGAD---------------------
:::::::::::::::::::::::::::::::::::::::
gi|818 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHE
340 350 360 370 380 390
250 260 270 280
mKIAA1 -------------------------ERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEG
::::::::::::::::::::::: :::::::::::
gi|818 ETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTTAAHAQGTGPEG
400 410 420 430 440 450
290 300 310
mKIAA1 GKGRAVADALNRQIREEVASTVSSSYR
::::::::::::::::::.::::::::
gi|818 GKGRAVADALNRQIREEVTSTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETS
460 470 480 490 500 510
>>gi|3287265|emb|CAA05555.1| E-STOP protein [Rattus norv (660 aa)
initn: 1893 init1: 1893 opt: 1897 Z-score: 1736.5 bits: 330.5 E(): 5.1e-88
Smith-Waterman score: 1923; 74.938% identity (76.427% similar) in 403 aa overlap (1-311:121-523)
10 20 30
mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER
::::::::::::::::::::::::::::::
gi|328 TAAAPGRSGLGLGAASGSTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER
100 110 120 130 140 150
40 50 60 70 80 90
mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
::::::::::::::::::::::::::::::::::: ::::.::::::::::::.::::::
gi|328 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSPPVLGMPKRRPQSQERGPIQLSADA
160 170 180 190 200 210
100 110 120 130 140 150
mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
::::::::::: :::::::.:::::::::::::::::.::::::::::::::::::::::
gi|328 RDPEGAGGAGVPAAGKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAA
220 230 240 250 260 270
160 170 180 190 200 210
mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
gi|328 GKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
280 290 300 310 320 330
220
mKIAA1 AGPAWMVTRTEGHEE---------------------------------------------
:::::::::::::::
gi|328 AGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHE
340 350 360 370 380 390
230
mKIAA1 -----------------------------------------------TPLPPAQSQTQEG
:::::::::::::
gi|328 ETPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQSQTQEG
400 410 420 430 440 450
240 250 260 270 280 290
mKIAA1 GPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADALNRQI
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
gi|328 GPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTTAAHAQGTGPEGGKGRAVADALNRQI
460 470 480 490 500 510
300 310
mKIAA1 REEVASTVSSSYR
::::.::::::::
gi|328 REEVTSTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTT
520 530 540 550 560 570
>>gi|50925501|gb|AAH78848.1| Mtap6 protein [Rattus norve (667 aa)
initn: 1893 init1: 1893 opt: 1897 Z-score: 1736.5 bits: 330.6 E(): 5.1e-88
Smith-Waterman score: 1923; 74.938% identity (76.427% similar) in 403 aa overlap (1-311:121-523)
10 20 30
mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER
::::::::::::::::::::::::::::::
gi|509 TAAAPGRSGLGLGAASGSTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER
100 110 120 130 140 150
40 50 60 70 80 90
mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
::::::::::::::::::::::::::::::::::: ::::.::::::::::::.::::::
gi|509 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSPPVLGMPKRRPQSQERGPIQLSADA
160 170 180 190 200 210
100 110 120 130 140 150
mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
::::::::::: :::::::.:::::::::::::::::.::::::::::::::::::::::
gi|509 RDPEGAGGAGVPAAGKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAA
220 230 240 250 260 270
160 170 180 190 200 210
mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
gi|509 GKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
280 290 300 310 320 330
220
mKIAA1 AGPAWMVTRTEGHEE---------------------------------------------
:::::::::::::::
gi|509 AGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHE
340 350 360 370 380 390
230
mKIAA1 -----------------------------------------------TPLPPAQSQTQEG
:::::::::::::
gi|509 ETPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQSQTQEG
400 410 420 430 440 450
240 250 260 270 280 290
mKIAA1 GPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADALNRQI
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::::::
gi|509 GPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTTAAHAQGTGPEGGKGRAVADALNRQI
460 470 480 490 500 510
300 310
mKIAA1 REEVASTVSSSYR
::::.::::::::
gi|509 REEVTSTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTT
520 530 540 550 560 570
>>gi|149068862|gb|EDM18414.1| rCG39515, isoform CRA_a [R (952 aa)
initn: 1893 init1: 1893 opt: 1897 Z-score: 1734.5 bits: 330.7 E(): 6.6e-88
Smith-Waterman score: 2015; 84.594% identity (86.275% similar) in 357 aa overlap (1-311:121-477)
10 20 30
mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER
::::::::::::::::::::::::::::::
gi|149 TAAAPGRSGLGLGAASGSTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER
100 110 120 130 140 150
40 50 60 70 80 90
mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA
::::::::::::::::::::::::::::::::::: ::::.::::::::::::.::::::
gi|149 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSPPVLGMPKRRPQSQERGPIQLSADA
160 170 180 190 200 210
100 110 120 130 140 150
mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA
::::::::::: :::::::.:::::::::::::::::.::::::::::::::::::::::
gi|149 RDPEGAGGAGVPAAGKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAA
220 230 240 250 260 270
160 170 180 190 200 210
mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
:::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::
gi|149 GKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK
280 290 300 310 320 330
220
mKIAA1 AGPAWMVTRTEGHEE---------------------------------------------
:::::::::::::::
gi|149 AGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHE
340 350 360 370 380 390
230 240 250 260 270 280
mKIAA1 -TPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEG
::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
gi|149 ETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTTAAHAQGTGPEG
400 410 420 430 440 450
290 300 310
mKIAA1 GKGRAVADALNRQIREEVASTVSSSYR
::::::::::::::::::.::::::::
gi|149 GKGRAVADALNRQIREEVTSTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETS
460 470 480 490 500 510
>>gi|114520594|ref|NP_001036820.2| microtubule-associate (306 aa)
initn: 1549 init1: 1549 opt: 1549 Z-score: 1424.1 bits: 271.6 E(): 1.3e-70
Smith-Waterman score: 1549; 100.000% identity (100.000% similar) in 228 aa overlap (84-311:1-228)
60 70 80 90 100 110
mKIAA1 KPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADARDPEGAGGAGVLAAGKASGVDQR
::::::::::::::::::::::::::::::
gi|114 MQLSADARDPEGAGGAGVLAAGKASGVDQR
10 20 30
120 130 140 150 160 170
mKIAA1 DTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 DTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTR
40 50 60 70 80 90
180 190 200 210 220 230
mKIAA1 SEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 SEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQS
100 110 120 130 140 150
240 250 260 270 280 290
mKIAA1 QTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|114 QTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA
160 170 180 190 200 210
300 310
mKIAA1 LNRQIREEVASTVSSSYR
::::::::::::::::::
gi|114 LNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEA
220 230 240 250 260 270
>>gi|3171936|emb|CAA75989.1| F-STOP protein [Mus musculu (306 aa)
initn: 1544 init1: 1544 opt: 1544 Z-score: 1419.6 bits: 270.8 E(): 2.3e-70
Smith-Waterman score: 1544; 99.561% identity (100.000% similar) in 228 aa overlap (84-311:1-228)
60 70 80 90 100 110
mKIAA1 KPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADARDPEGAGGAGVLAAGKASGVDQR
::::::::::::::::::::::::::::::
gi|317 MQLSADARDPEGAGGAGVLAAGKASGVDQR
10 20 30
120 130 140 150 160 170
mKIAA1 DTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|317 DTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTR
40 50 60 70 80 90
180 190 200 210 220 230
mKIAA1 SEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQS
::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
gi|317 SEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHKETPLPPAQS
100 110 120 130 140 150
240 250 260 270 280 290
mKIAA1 QTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|317 QTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA
160 170 180 190 200 210
300 310
mKIAA1 LNRQIREEVASTVSSSYR
::::::::::::::::::
gi|317 LNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEA
220 230 240 250 260 270
311 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Mon Mar 16 06:09:02 2009 done: Mon Mar 16 06:14:35 2009
Total Scan time: 771.790 Total Display time: 0.090
Function used was FASTA [version 34.26.5 April 26, 2007]