# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mfj00027.fasta.nr -Q ../query/mKIAA1878.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1878, 311 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7912040 sequences Expectation_n fit: rho(ln(x))= 6.2026+/-0.000199; mu= 3.7793+/- 0.011 mean_var=120.7069+/-22.673, 0's: 37 Z-trim: 52 B-trim: 0 in 0/66 Lambda= 0.116737 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|31418674|gb|AAH53039.1| Microtubule-associated ( 568) 2174 377.1 4.1e-102 gi|205830863|sp|Q7TSJ2.2|MAP6_MOUSE RecName: Full= ( 906) 2174 377.3 5.8e-102 gi|3171934|emb|CAA75930.1| neuronal-STOP protein [ ( 906) 2169 376.5 1e-101 gi|2769587|emb|CAA75049.1| STOP protein [Mus muscu ( 906) 2166 376.0 1.5e-101 gi|81863336|sp|Q63560.1|MAP6_RAT RecName: Full=Mic ( 952) 1903 331.7 3.3e-88 gi|3287265|emb|CAA05555.1| E-STOP protein [Rattus ( 660) 1897 330.5 5.1e-88 gi|50925501|gb|AAH78848.1| Mtap6 protein [Rattus n ( 667) 1897 330.6 5.1e-88 gi|149068862|gb|EDM18414.1| rCG39515, isoform CRA_ ( 952) 1897 330.7 6.6e-88 gi|114520594|ref|NP_001036820.2| microtubule-assoc ( 306) 1549 271.6 1.3e-70 gi|3171936|emb|CAA75989.1| F-STOP protein [Mus mus ( 306) 1544 270.8 2.3e-70 gi|152012806|gb|AAI50255.1| Microtubule-associated ( 439) 887 160.3 6.1e-37 gi|119595387|gb|EAW74981.1| hCG1816277 [Homo sapie ( 302) 882 159.3 8.3e-37 gi|48375167|ref|NP_997460.1| microtubule-associate ( 439) 882 159.4 1.1e-36 gi|39795300|gb|AAH63860.1| MAP6 protein [Homo sapi ( 723) 882 159.6 1.6e-36 gi|205830862|sp|Q96JE9.2|MAP6_HUMAN RecName: Full= ( 813) 882 159.7 1.7e-36 gi|109107974|ref|XP_001086367.1| PREDICTED: simila ( 440) 867 156.9 6.3e-36 gi|114639438|ref|XP_001175009.1| PREDICTED: microt ( 441) 865 156.6 8e-36 gi|109107972|ref|XP_001086478.1| PREDICTED: simila ( 792) 867 157.2 9.6e-36 gi|55636659|ref|XP_508647.1| PREDICTED: microtubul ( 815) 865 156.8 1.2e-35 gi|76636123|ref|XP_870004.1| PREDICTED: similar to ( 815) 817 148.7 3.4e-33 gi|73988137|ref|XP_534007.2| PREDICTED: similar to ( 763) 813 148.0 5.1e-33 gi|82070362|sp|O73737.1|MAP6_CHICK RecName: Full=M ( 369) 417 81.1 3.6e-13 gi|148684428|gb|EDL16375.1| microtubule-associated ( 208) 398 77.6 2.2e-12 gi|205830850|sp|B0S4Q5.1|MAP6_XENTR RecName: Full= ( 378) 396 77.5 4.3e-12 gi|47210176|emb|CAF90592.1| unnamed protein produc ( 394) 327 65.9 1.4e-08 gi|223648086|gb|ACN10801.1| MAP6 domain-containing ( 394) 326 65.8 1.6e-08 gi|125828039|ref|XP_001336546.1| PREDICTED: im:713 ( 452) 317 64.3 4.9e-08 gi|189528809|ref|XP_001921239.1| PREDICTED: mediat ( 381) 313 63.6 6.9e-08 gi|47223781|emb|CAF98551.1| unnamed protein produc ( 279) 308 62.6 9.9e-08 gi|194181272|gb|EDW94883.1| AGO2 [Drosophila yakub (1173) 244 52.4 0.00049 gi|109095693|ref|XP_001083764.1| PREDICTED: hypoth ( 495) 230 49.7 0.0013 gi|28317062|gb|AAO39550.1| RE04347p [Drosophila me (1214) 229 49.9 0.0029 gi|51316118|sp|Q9VUQ5.3|AGO2_DROME RecName: Full=P (1214) 225 49.2 0.0046 gi|23093414|gb|AAF49620.2| argonaute 2, isoform C (1217) 225 49.2 0.0046 gi|133915707|emb|CAM05820.1| hypothetical protein ( 904) 221 48.4 0.006 >>gi|31418674|gb|AAH53039.1| Microtubule-associated prot (568 aa) initn: 2174 init1: 2174 opt: 2174 Z-score: 1989.5 bits: 377.1 E(): 4.1e-102 Smith-Waterman score: 2174; 100.000% identity (100.000% similar) in 311 aa overlap (1-311:121-431) 10 20 30 mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER :::::::::::::::::::::::::::::: gi|314 TVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|314 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|314 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|314 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK 280 290 300 310 320 330 220 230 240 250 260 270 mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|314 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE 340 350 360 370 380 390 280 290 300 310 mKIAA1 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYR ::::::::::::::::::::::::::::::::::::::::: gi|314 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKP 400 410 420 430 440 450 gi|314 QYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIRSLYSEPFKECPKVEKPSVQS 460 470 480 490 500 510 >>gi|205830863|sp|Q7TSJ2.2|MAP6_MOUSE RecName: Full=Micr (906 aa) initn: 2174 init1: 2174 opt: 2174 Z-score: 1986.9 bits: 377.3 E(): 5.8e-102 Smith-Waterman score: 2174; 100.000% identity (100.000% similar) in 311 aa overlap (1-311:121-431) 10 20 30 mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER :::::::::::::::::::::::::::::: gi|205 TVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK 280 290 300 310 320 330 220 230 240 250 260 270 mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|205 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE 340 350 360 370 380 390 280 290 300 310 mKIAA1 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYR ::::::::::::::::::::::::::::::::::::::::: gi|205 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKP 400 410 420 430 440 450 gi|205 QYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIRSLYSEPFKECPKVEKPSVQS 460 470 480 490 500 510 >>gi|3171934|emb|CAA75930.1| neuronal-STOP protein [Mus (906 aa) initn: 2169 init1: 2169 opt: 2169 Z-score: 1982.3 bits: 376.5 E(): 1e-101 Smith-Waterman score: 2169; 99.678% identity (100.000% similar) in 311 aa overlap (1-311:121-431) 10 20 30 mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER :::::::::::::::::::::::::::::: gi|317 TVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|317 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|317 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|317 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK 280 290 300 310 320 330 220 230 240 250 260 270 mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE :::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::: gi|317 AGPAWMVTRTEGHKETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE 340 350 360 370 380 390 280 290 300 310 mKIAA1 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYR ::::::::::::::::::::::::::::::::::::::::: gi|317 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKP 400 410 420 430 440 450 gi|317 QYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIRSLYSEPFKECPKVEKPSVQS 460 470 480 490 500 510 >>gi|2769587|emb|CAA75049.1| STOP protein [Mus musculus] (906 aa) initn: 2166 init1: 2166 opt: 2166 Z-score: 1979.6 bits: 376.0 E(): 1.5e-101 Smith-Waterman score: 2166; 99.678% identity (100.000% similar) in 311 aa overlap (1-311:121-431) 10 20 30 mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER :::::::::::::::::::::::::::::: gi|276 TVAAPGRSGLGLGAASASTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|276 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|276 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|276 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK 280 290 300 310 320 330 220 230 240 250 260 270 mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|276 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHE 340 350 360 370 380 390 280 290 300 310 mKIAA1 QTPAAHAQGTGPEGGKGRAVADALNRQIREEVASTVSSSYR ::::::::::::::.:::::::::::::::::::::::::: gi|276 QTPAAHAQGTGPEGSKGRAVADALNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKP 400 410 420 430 440 450 gi|276 QYKPPDDKMVHETSYSAQFKGEANKPSAADNKAMDRRRIRSLYSEPFKECPKVEKPSVQS 460 470 480 490 500 510 >>gi|81863336|sp|Q63560.1|MAP6_RAT RecName: Full=Microtu (952 aa) initn: 1899 init1: 1899 opt: 1903 Z-score: 1739.9 bits: 331.7 E(): 3.3e-88 Smith-Waterman score: 2015; 84.594% identity (86.275% similar) in 357 aa overlap (1-311:121-477) 10 20 30 mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER :::::::::::::::::::::::::::::: gi|818 TAAAPGRSGLGLGAASGSTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA ::::::::::::::::::::::::::::::::::: ::::.::::::::::::.:::::: gi|818 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSPPVLGMPKRRPQSQERGPIQLSADA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA ::::::::::: :::::::.:::::::::::::::::.:::::::::::::::::::::: gi|818 RDPEGAGGAGVPAAGKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAA 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|818 GKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK 280 290 300 310 320 330 220 230 240 mKIAA1 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGAD--------------------- ::::::::::::::::::::::::::::::::::::::: gi|818 AGPAWMVTRTEGHEETPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHE 340 350 360 370 380 390 250 260 270 280 mKIAA1 -------------------------ERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEG ::::::::::::::::::::::: ::::::::::: gi|818 ETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTTAAHAQGTGPEG 400 410 420 430 440 450 290 300 310 mKIAA1 GKGRAVADALNRQIREEVASTVSSSYR ::::::::::::::::::.:::::::: gi|818 GKGRAVADALNRQIREEVTSTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETS 460 470 480 490 500 510 >>gi|3287265|emb|CAA05555.1| E-STOP protein [Rattus norv (660 aa) initn: 1893 init1: 1893 opt: 1897 Z-score: 1736.5 bits: 330.5 E(): 5.1e-88 Smith-Waterman score: 1923; 74.938% identity (76.427% similar) in 403 aa overlap (1-311:121-523) 10 20 30 mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER :::::::::::::::::::::::::::::: gi|328 TAAAPGRSGLGLGAASGSTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA ::::::::::::::::::::::::::::::::::: ::::.::::::::::::.:::::: gi|328 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSPPVLGMPKRRPQSQERGPIQLSADA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA ::::::::::: :::::::.:::::::::::::::::.:::::::::::::::::::::: gi|328 RDPEGAGGAGVPAAGKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAA 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|328 GKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK 280 290 300 310 320 330 220 mKIAA1 AGPAWMVTRTEGHEE--------------------------------------------- ::::::::::::::: gi|328 AGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHE 340 350 360 370 380 390 230 mKIAA1 -----------------------------------------------TPLPPAQSQTQEG ::::::::::::: gi|328 ETPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQSQTQEG 400 410 420 430 440 450 240 250 260 270 280 290 mKIAA1 GPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADALNRQI :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|328 GPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTTAAHAQGTGPEGGKGRAVADALNRQI 460 470 480 490 500 510 300 310 mKIAA1 REEVASTVSSSYR ::::.:::::::: gi|328 REEVTSTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTT 520 530 540 550 560 570 >>gi|50925501|gb|AAH78848.1| Mtap6 protein [Rattus norve (667 aa) initn: 1893 init1: 1893 opt: 1897 Z-score: 1736.5 bits: 330.6 E(): 5.1e-88 Smith-Waterman score: 1923; 74.938% identity (76.427% similar) in 403 aa overlap (1-311:121-523) 10 20 30 mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER :::::::::::::::::::::::::::::: gi|509 TAAAPGRSGLGLGAASGSTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA ::::::::::::::::::::::::::::::::::: ::::.::::::::::::.:::::: gi|509 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSPPVLGMPKRRPQSQERGPIQLSADA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA ::::::::::: :::::::.:::::::::::::::::.:::::::::::::::::::::: gi|509 RDPEGAGGAGVPAAGKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAA 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|509 GKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK 280 290 300 310 320 330 220 mKIAA1 AGPAWMVTRTEGHEE--------------------------------------------- ::::::::::::::: gi|509 AGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHE 340 350 360 370 380 390 230 mKIAA1 -----------------------------------------------TPLPPAQSQTQEG ::::::::::::: gi|509 ETPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQSQTQEG 400 410 420 430 440 450 240 250 260 270 280 290 mKIAA1 GPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADALNRQI :::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::: gi|509 GPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTTAAHAQGTGPEGGKGRAVADALNRQI 460 470 480 490 500 510 300 310 mKIAA1 REEVASTVSSSYR ::::.:::::::: gi|509 REEVTSTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEASKPTT 520 530 540 550 560 570 >>gi|149068862|gb|EDM18414.1| rCG39515, isoform CRA_a [R (952 aa) initn: 1893 init1: 1893 opt: 1897 Z-score: 1734.5 bits: 330.7 E(): 6.6e-88 Smith-Waterman score: 2015; 84.594% identity (86.275% similar) in 357 aa overlap (1-311:121-477) 10 20 30 mKIAA1 QDYRAWKVQRPEPSCRPRSEYQPSDAPFER :::::::::::::::::::::::::::::: gi|149 TAAAPGRSGLGLGAASGSTSGSGPADSVMRQDYRAWKVQRPEPSCRPRSEYQPSDAPFER 100 110 120 130 140 150 40 50 60 70 80 90 mKIAA1 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADA ::::::::::::::::::::::::::::::::::: ::::.::::::::::::.:::::: gi|149 ETQYQKDFRAWPLPRRGDHPWIPKPVQIPATSQPSPPVLGMPKRRPQSQERGPIQLSADA 160 170 180 190 200 210 100 110 120 130 140 150 mKIAA1 RDPEGAGGAGVLAAGKASGVDQRDTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAA ::::::::::: :::::::.:::::::::::::::::.:::::::::::::::::::::: gi|149 RDPEGAGGAGVPAAGKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAA 220 230 240 250 260 270 160 170 180 190 200 210 mKIAA1 GKASGADQRDTRRKAGPAWMVTRSEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK :::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|149 GKASGADQRDTRRKAGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRK 280 290 300 310 320 330 220 mKIAA1 AGPAWMVTRTEGHEE--------------------------------------------- ::::::::::::::: gi|149 AGPAWMVTRTEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHE 340 350 360 370 380 390 230 240 250 260 270 280 mKIAA1 -TPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEG ::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: gi|149 ETPLPPAQSQTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTTAAHAQGTGPEG 400 410 420 430 440 450 290 300 310 mKIAA1 GKGRAVADALNRQIREEVASTVSSSYR ::::::::::::::::::.:::::::: gi|149 GKGRAVADALNRQIREEVTSTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETS 460 470 480 490 500 510 >>gi|114520594|ref|NP_001036820.2| microtubule-associate (306 aa) initn: 1549 init1: 1549 opt: 1549 Z-score: 1424.1 bits: 271.6 E(): 1.3e-70 Smith-Waterman score: 1549; 100.000% identity (100.000% similar) in 228 aa overlap (84-311:1-228) 60 70 80 90 100 110 mKIAA1 KPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADARDPEGAGGAGVLAAGKASGVDQR :::::::::::::::::::::::::::::: gi|114 MQLSADARDPEGAGGAGVLAAGKASGVDQR 10 20 30 120 130 140 150 160 170 mKIAA1 DTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 DTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTR 40 50 60 70 80 90 180 190 200 210 220 230 mKIAA1 SEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 SEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQS 100 110 120 130 140 150 240 250 260 270 280 290 mKIAA1 QTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA 160 170 180 190 200 210 300 310 mKIAA1 LNRQIREEVASTVSSSYR :::::::::::::::::: gi|114 LNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEA 220 230 240 250 260 270 >>gi|3171936|emb|CAA75989.1| F-STOP protein [Mus musculu (306 aa) initn: 1544 init1: 1544 opt: 1544 Z-score: 1419.6 bits: 270.8 E(): 2.3e-70 Smith-Waterman score: 1544; 99.561% identity (100.000% similar) in 228 aa overlap (84-311:1-228) 60 70 80 90 100 110 mKIAA1 KPVQIPATSQPSQPVLGVPKRRPQSQERGPMQLSADARDPEGAGGAGVLAAGKASGVDQR :::::::::::::::::::::::::::::: gi|317 MQLSADARDPEGAGGAGVLAAGKASGVDQR 10 20 30 120 130 140 150 160 170 mKIAA1 DTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|317 DTRRKAGPAWMVTRNEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTR 40 50 60 70 80 90 180 190 200 210 220 230 mKIAA1 SEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHEETPLPPAQS ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: gi|317 SEGHEEKPLPPAQSQTQEGGPAAGKASGADQRDTRRKAGPAWMVTRTEGHKETPLPPAQS 100 110 120 130 140 150 240 250 260 270 280 290 mKIAA1 QTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|317 QTQEGGPAAGKASGADERDTRRKAGPAWMVRRSEGHEQTPAAHAQGTGPEGGKGRAVADA 160 170 180 190 200 210 300 310 mKIAA1 LNRQIREEVASTVSSSYR :::::::::::::::::: gi|317 LNRQIREEVASTVSSSYRNEFRAWTDIKPVKPIKAKPQYKPPDDKMVHETSYSAQFKGEA 220 230 240 250 260 270 311 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 06:09:02 2009 done: Mon Mar 16 06:14:35 2009 Total Scan time: 771.790 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]