# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mek02751.fasta.nr -Q ../query/mKIAA1143.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1143, 120 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921172 sequences Expectation_n fit: rho(ln(x))= 4.9381+/-0.000182; mu= 6.4514+/- 0.010 mean_var=71.0676+/-13.604, 0's: 36 Z-trim: 38 B-trim: 6 in 1/66 Lambda= 0.152138 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|12835450|dbj|BAB23258.1| unnamed protein produc ( 155) 461 109.3 1.8e-22 gi|119586338|gb|EAW65934.1| hCG1639915 [Homo sapie ( 149) 380 91.5 4e-17 gi|109041168|ref|XP_001105000.1| PREDICTED: simila ( 176) 377 90.9 7.1e-17 gi|57101292|ref|XP_533861.1| PREDICTED: similar to ( 172) 360 87.2 9.3e-16 gi|149632043|ref|XP_001513155.1| PREDICTED: hypoth ( 113) 300 73.9 6.2e-12 gi|62858523|ref|NP_001016005.1| hypothetical prote ( 154) 254 63.9 8.6e-09 gi|224045538|ref|XP_002199104.1| PREDICTED: hypoth ( 158) 254 63.9 8.8e-09 gi|114158713|ref|NP_997863.2| hypothetical protein ( 151) 225 57.5 7e-07 gi|47213768|emb|CAF95597.1| unnamed protein produc ( 156) 224 57.3 8.4e-07 gi|12848663|dbj|BAB28043.1| unnamed protein produc ( 116) 202 52.4 1.9e-05 gi|210130071|gb|EEA77743.1| hypothetical protein B ( 151) 182 48.1 0.00049 >>gi|12835450|dbj|BAB23258.1| unnamed protein product [M (155 aa) initn: 458 init1: 458 opt: 461 Z-score: 559.7 bits: 109.3 E(): 1.8e-22 Smith-Waterman score: 461; 68.468% identity (85.586% similar) in 111 aa overlap (10-120:48-155) 10 20 30 mKIAA1 CRVLFIVGQNQNYHEQAEPSVLCAARRARLPVPLQRESR :.. .:. .:.:. . ... : . .. . gi|128 LSRFKERVGYKEGATVETKKIQPQLPDEDGNHSDKEDEQPQVV-VLKKGDLTA--EEVMK 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA1 LQGGAHRRDQDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRK ... . :::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 IKAEIKAAKTDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRK 80 90 100 110 120 130 100 110 120 mKIAA1 NSQKQIKNSSLLSFDSEDENE ::::::::::::::::::::: gi|128 NSQKQIKNSSLLSFDSEDENE 140 150 >>gi|119586338|gb|EAW65934.1| hCG1639915 [Homo sapiens] (149 aa) initn: 263 init1: 241 opt: 380 Z-score: 463.8 bits: 91.5 E(): 4e-17 Smith-Waterman score: 380; 57.658% identity (81.982% similar) in 111 aa overlap (10-120:43-149) 10 20 30 mKIAA1 CRVLFIVGQNQNYHEQAEPSVLCAARRARLPVPLQRESR ... .:. .:.:. . ... : : .. .. gi|119 LARFKERVGYREGPTVETKRIQPQPPDEDGDHSDKEDEQPQVV-VLKKGDLSV--EEVTK 20 30 40 50 60 40 50 60 70 80 90 mKIAA1 LQGGAHRRDQDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRK ... . :::: :::::..::::::. :::: ::::::::::: :::.:: :.::.: gi|119 IKAEIKAAKADEEPTPADGRVIYRKPVKHPSDEKYSGLTASSKKKKPNEDEVN-QDSVKK 70 80 90 100 110 120 100 110 120 mKIAA1 NSQKQIKNSSLLSFDSEDENE :::::::::::::::.::::: gi|119 NSQKQIKNSSLLSFDNEDENE 130 140 >>gi|109041168|ref|XP_001105000.1| PREDICTED: similar to (176 aa) initn: 270 init1: 248 opt: 377 Z-score: 459.3 bits: 90.9 E(): 7.1e-17 Smith-Waterman score: 377; 57.658% identity (81.081% similar) in 111 aa overlap (10-120:48-154) 10 20 30 mKIAA1 CRVLFIVGQNQNYHEQAEPSVLCAARRARLPVPLQRESR ... .:. .:.:. . ... : : .. . gi|109 LARFKERVGYREGPTIETKRIQPQPPDEDGDHSDKEDEQPQVV-VLKKGDLSV--EEVMK 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA1 LQGGAHRRDQDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRK ... . :::: ::::::.::::::: :::: ::::::::::: :::..: :.::.: gi|109 IKAEIKAAKADEEPAPADGRIIYRKPVKRPSDEKYSGLTASSKKKKPNEDEIN-QDSVKK 80 90 100 110 120 130 100 110 120 mKIAA1 NSQKQIKNSSLLSFDSEDENE .::::::::::::::.::::: gi|109 SSQKQIKNSSLLSFDNEDENESCYVAEVGLKCLGSLDPPSSAS 140 150 160 170 >>gi|57101292|ref|XP_533861.1| PREDICTED: similar to T25 (172 aa) initn: 357 init1: 357 opt: 360 Z-score: 439.2 bits: 87.2 E(): 9.3e-16 Smith-Waterman score: 360; 55.046% identity (82.569% similar) in 109 aa overlap (10-118:65-170) 10 20 30 mKIAA1 CRVLFIVGQNQNYHEQAEPSVLCAARRARLPVPLQRESR ... .:. .:.:. . ... : : .. . gi|571 LARFKERVGYREGPTVETKRTQLQLPDEDGDHSDKEDEQPQVV-VLKKGDLSV--EEVMK 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA1 LQGGAHRRDQDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRK ... . :::: .::::.:::::::::::: :::::::::.:..::..:.:.::.: gi|571 IKAEIKAAKADEEPAAVDGRIMYRKPVKRSSDEKYSGLTASSKKRKAKEDEINNQDSVKK 100 110 120 130 140 150 100 110 120 mKIAA1 NSQKQIKNSSLLSFDSEDENE :::::::::::::::.::: gi|571 NSQKQIKNSSLLSFDNEDEIA 160 170 >>gi|149632043|ref|XP_001513155.1| PREDICTED: hypothetic (113 aa) initn: 329 init1: 279 opt: 300 Z-score: 370.5 bits: 73.9 E(): 6.2e-12 Smith-Waterman score: 300; 51.456% identity (74.757% similar) in 103 aa overlap (21-118:10-112) 10 20 30 40 50 mKIAA1 CRVLFIVGQNQNYHEQAEPSVLCAARRARLPVPLQR----ESRLQGGAHRRDQDEEPPPA .. .. .: : : .. ...:. . . :.:::: :: gi|149 MGALHHFIGIVVSTSVVRPPSPTRKAPSPQQQLKESNNNSDDDEEPVPA 10 20 30 40 60 70 80 90 100 110 mKIAA1 DGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRKNSQKQIKNSSLLSF-DS ::.:..::::::::::: ::::::.::: .: .: . ::.:::::::::::: :. gi|149 DGKIMFRKPVKRSSDEKYMGLTASSSKKKKEEKKNMGDSVAPKNTQKQIKNSSLLSFGDD 50 60 70 80 90 100 120 mKIAA1 EDENE :.: gi|149 EEEY 110 >>gi|62858523|ref|NP_001016005.1| hypothetical protein L (154 aa) initn: 242 init1: 155 opt: 254 Z-score: 314.1 bits: 63.9 E(): 8.6e-09 Smith-Waterman score: 254; 41.509% identity (74.528% similar) in 106 aa overlap (15-120:53-153) 10 20 30 40 mKIAA1 CRVLFIVGQNQNYHEQAEPSVLCAARRARLPVPLQRESRLQGGA :. .:.:. . :.. : . .. ... gi|628 KDVGYKEGPTVDTKRQELPVLADDSDGSDKEDEQPQVV-VLRKGDLSA--EEVMKIKEQI 30 40 50 60 70 50 60 70 80 90 100 mKIAA1 HRRDQDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRKNSQKQ .. .. :: :.::.:...::::: : .: ::..::: ::: .:: :..: . :::: gi|628 KENSKGEEAAPSDGKILFKKPVKRLSGDKISGINASSTKKKKQED--IKETSSTNASQKQ 80 90 100 110 120 130 110 120 mKIAA1 IKNSSLLSFDSEDENE ..::::::::..:.:. gi|628 VRNSSLLSFDDDDDNDD 140 150 >>gi|224045538|ref|XP_002199104.1| PREDICTED: hypothetic (158 aa) initn: 248 init1: 135 opt: 254 Z-score: 314.0 bits: 63.9 E(): 8.8e-09 Smith-Waterman score: 254; 35.398% identity (78.761% similar) in 113 aa overlap (10-120:48-158) 10 20 30 mKIAA1 CRVLFIVGQNQNYHEQAEPSVLCAARRARLPVP--LQRE : . .:. .:.:. . ... : . .. . gi|224 LSRFKQRVGYREGPTVDTKREQLPLADDSDNGSDKEDEQPQVV-TLKKGDLTAEEAMKIK 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA1 SRLQGGAHRRDQDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSV .... . . ...:.:: ::::.:..:::::::: ::: ...::.:: . . ....... gi|224 QQIKEALKSKESDDEPEPADGKIMFRKPVKRSS-EKCLDFNVSSSKKMKEANKTKREATT 80 90 100 110 120 130 100 110 120 mKIAA1 RKNSQKQIKNSSLLSFDSEDENE ... ::.:::::::::.:.... gi|224 SQSTAKQVKNSSLLSFDDEENDD 140 150 >>gi|114158713|ref|NP_997863.2| hypothetical protein LOC (151 aa) initn: 242 init1: 149 opt: 225 Z-score: 279.9 bits: 57.5 E(): 7e-07 Smith-Waterman score: 225; 49.333% identity (78.667% similar) in 75 aa overlap (46-120:80-149) 20 30 40 50 60 70 mKIAA1 QAEPSVLCAARRARLPVPLQRESRLQGGAHRRDQDEEPPPADGRIVYRKPVKRSSDEKCS .... .: ::.::.::..:::::::: : gi|114 SDREDEMPQVVVLKKGDLSAEEVMKMKKDSKEENTDEQPPSDGKIVFKKPVKRSSD-KFE 50 60 70 80 90 100 80 90 100 110 120 mKIAA1 GLTASSKKKKTNEDDVNKQSSVRKNSQKQIKNSSLLSFDSEDENE :.::::.::: .:: .:. . . ..:::::::: ..:..: gi|114 GITASSSKKKKSEDGEKKEPK----AGVKVKNSSLLSFGGDDDDEED 110 120 130 140 150 >>gi|47213768|emb|CAF95597.1| unnamed protein product [T (156 aa) initn: 247 init1: 148 opt: 224 Z-score: 278.5 bits: 57.3 E(): 8.4e-07 Smith-Waterman score: 224; 45.977% identity (78.161% similar) in 87 aa overlap (34-120:76-156) 10 20 30 40 50 60 mKIAA1 LFIVGQNQNYHEQAEPSVLCAARRARLPVPLQRESRLQGGAHRRDQDEEPPPADGRIVYR ...: : : .. : :::: ::.:... gi|472 EDDSGSDREDESPQVVVLKSGDLTADEVKKIKEEERPATGPKKGD---EPPP-DGKILFK 50 60 70 80 90 100 70 80 90 100 110 120 mKIAA1 KPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRKNSQKQIKNSSLLSFDSEDENE :: ::::.:: .:.::::.::: ..: .:. . ...: :.:::.::::: ...:.. gi|472 KPEKRSSSEKFQGITASSSKKK--KSDGEKMEGEKETSGKKIKNNSLLSFGGDEEED 110 120 130 140 150 >>gi|12848663|dbj|BAB28043.1| unnamed protein product [M (116 aa) initn: 199 init1: 199 opt: 202 Z-score: 254.1 bits: 52.4 E(): 1.9e-05 Smith-Waterman score: 202; 46.479% identity (76.056% similar) in 71 aa overlap (10-80:48-115) 10 20 30 mKIAA1 CRVLFIVGQNQNYHEQAEPSVLCAARRARLPVPLQRESR :.. .:. .:.:. . ... : . .. . gi|128 LSRFKERVGYKEGPTVETKKIQPQLPDEDGNHSDKEDEQPQVV-VLKKGDLTA--EEVMK 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA1 LQGGAHRRDQDEEPPPADGRIVYRKPVKRSSDEKCSGLTASSKKKKTNEDDVNKQSSVRK ... . :::::::::::::::::::::::::::: .. gi|128 IKAEIKAAKTDEEPPPADGRIVYRKPVKRSSDEKCSGLQGTP 80 90 100 110 100 110 120 mKIAA1 NSQKQIKNSSLLSFDSEDENE 120 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 22:22:24 2009 done: Thu Mar 12 22:26:12 2009 Total Scan time: 542.030 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]