# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mek00908.fasta.nr -Q ../query/mKIAA1378.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1378, 105 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7918587 sequences Expectation_n fit: rho(ln(x))= 4.8666+/-0.000177; mu= 6.0493+/- 0.010 mean_var=58.1738+/-11.446, 0's: 38 Z-trim: 55 B-trim: 0 in 0/67 Lambda= 0.168155 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|123226998|emb|CAM21395.1| kelch-like 8 (Drosoph ( 446) 728 184.3 1.2e-44 gi|123226999|emb|CAM21396.1| kelch-like 8 (Drosoph ( 553) 728 184.3 1.5e-44 gi|149046740|gb|EDL99514.1| rCG37870, isoform CRA_ ( 621) 728 184.4 1.6e-44 gi|26326953|dbj|BAC27220.1| unnamed protein produc ( 629) 728 184.4 1.6e-44 gi|28380065|sp|P59280.1|KLHL8_MOUSE RecName: Full= ( 629) 728 184.4 1.6e-44 gi|24474096|gb|AAM51177.1| kelch-like protein [Mus ( 629) 723 183.2 3.8e-44 gi|119626388|gb|EAX05983.1| kelch-like 8 (Drosophi ( 354) 701 177.7 9.6e-43 gi|51476262|emb|CAH18121.1| hypothetical protein [ ( 437) 701 177.7 1.1e-42 gi|109074909|ref|XP_001096107.1| PREDICTED: simila ( 544) 701 177.8 1.4e-42 gi|34364841|emb|CAE45855.1| hypothetical protein [ ( 544) 701 177.8 1.4e-42 gi|114595010|ref|XP_001157255.1| PREDICTED: hypoth ( 544) 701 177.8 1.4e-42 gi|119626389|gb|EAX05984.1| kelch-like 8 (Drosophi ( 610) 701 177.8 1.5e-42 gi|124056473|sp|Q9P2G9.4|KLHL8_HUMAN RecName: Full ( 620) 701 177.8 1.5e-42 gi|114595006|ref|XP_001157304.1| PREDICTED: kelch- ( 620) 701 177.8 1.5e-42 gi|193785953|dbj|BAG54740.1| unnamed protein produ ( 620) 701 177.8 1.5e-42 gi|109074905|ref|XP_001096342.1| PREDICTED: simila ( 620) 701 177.8 1.5e-42 gi|31874617|emb|CAD98048.1| hypothetical protein [ ( 620) 701 177.8 1.5e-42 gi|74001829|ref|XP_860113.1| PREDICTED: similar to ( 435) 699 177.2 1.6e-42 gi|74001831|ref|XP_860153.1| PREDICTED: similar to ( 542) 699 177.3 1.9e-42 gi|74001833|ref|XP_544969.2| PREDICTED: similar to ( 618) 699 177.3 2.1e-42 gi|27371076|gb|AAH41384.1| Kelch-like 8 (Drosophil ( 620) 688 174.7 1.4e-41 gi|89273891|emb|CAJ83909.1| kelch-like 8 [Xenopus ( 616) 638 162.5 6e-38 gi|124298006|gb|AAI31870.1| Kelch-like 8 (Drosophi ( 604) 614 156.7 3.4e-36 gi|47219897|emb|CAF97167.1| unnamed protein produc ( 592) 606 154.8 1.3e-35 gi|210124064|gb|EEA71762.1| hypothetical protein B ( 582) 443 115.2 1e-23 gi|158590833|gb|EDP29448.1| Kelch motif family pro ( 798) 380 100.0 5.2e-19 gi|83921795|gb|AAC17684.4| Hypothetical protein W0 ( 690) 360 95.1 1.3e-17 gi|187034193|emb|CAP26920.1| C. briggsae CBR-KEL-8 ( 694) 357 94.4 2.2e-17 gi|156228831|gb|EDO49628.1| predicted protein [Nem ( 588) 329 87.6 2.1e-15 gi|210098091|gb|EEA46208.1| hypothetical protein B ( 257) 312 83.2 1.9e-14 gi|26338091|dbj|BAC32731.1| unnamed protein produc ( 95) 307 81.8 1.9e-14 gi|156228932|gb|EDO49729.1| predicted protein [Nem ( 555) 312 83.4 3.6e-14 gi|20987711|gb|AAH29801.1| Klhl20 protein [Mus mus ( 236) 307 82.0 4.1e-14 gi|194374615|dbj|BAG62422.1| unnamed protein produ ( 420) 307 82.1 6.6e-14 gi|210090556|gb|EEA38829.1| hypothetical protein B ( 544) 308 82.5 6.8e-14 gi|109019589|ref|XP_001097033.1| PREDICTED: simila ( 497) 307 82.2 7.5e-14 gi|47206678|emb|CAF91530.1| unnamed protein produc ( 225) 303 81.0 7.7e-14 gi|73960604|ref|XP_861742.1| PREDICTED: similar to ( 531) 307 82.2 7.9e-14 gi|119611360|gb|EAW90954.1| kelch-like 20 (Drosoph ( 561) 307 82.2 8.3e-14 gi|49899065|gb|AAH76782.1| MGC83688 protein [Xenop ( 604) 307 82.2 8.8e-14 gi|52783081|sp|Q8VCK5.2|KLH20_MOUSE RecName: Full= ( 604) 307 82.2 8.8e-14 gi|224058904|ref|XP_002196033.1| PREDICTED: kelch- ( 609) 307 82.2 8.9e-14 gi|39645826|gb|AAH63418.1| Kelch-like 20 (Drosophi ( 609) 307 82.2 8.9e-14 gi|193785546|dbj|BAG50912.1| unnamed protein produ ( 609) 307 82.2 8.9e-14 gi|53131262|emb|CAG31804.1| hypothetical protein [ ( 610) 307 82.2 8.9e-14 gi|126306425|ref|XP_001373245.1| PREDICTED: simila ( 667) 307 82.3 9.6e-14 gi|34785438|gb|AAH57505.1| Kelch-like 20 (Drosophi ( 513) 303 81.2 1.5e-13 gi|73960606|ref|XP_861770.1| PREDICTED: similar to ( 467) 301 80.7 2e-13 gi|156226360|gb|EDO47170.1| predicted protein [Nem ( 567) 300 80.5 2.7e-13 gi|157019279|gb|EAA05692.3| AGAP011587-PA [Anophel ( 582) 299 80.3 3.3e-13 >>gi|123226998|emb|CAM21395.1| kelch-like 8 (Drosophila) (446 aa) initn: 728 init1: 728 opt: 728 Z-score: 957.6 bits: 184.3 E(): 1.2e-44 Smith-Waterman score: 728; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:342-446) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|123 KWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 320 330 340 350 360 370 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ 380 390 400 410 420 430 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::::::::: gi|123 IRDVGHGSTNVVDCM 440 >>gi|123226999|emb|CAM21396.1| kelch-like 8 (Drosophila) (553 aa) initn: 728 init1: 728 opt: 728 Z-score: 956.3 bits: 184.3 E(): 1.5e-44 Smith-Waterman score: 728; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:449-553) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|123 KWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 420 430 440 450 460 470 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ 480 490 500 510 520 530 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::::::::: gi|123 IRDVGHGSTNVVDCM 540 550 >>gi|149046740|gb|EDL99514.1| rCG37870, isoform CRA_a [R (621 aa) initn: 728 init1: 728 opt: 728 Z-score: 955.5 bits: 184.4 E(): 1.6e-44 Smith-Waterman score: 728; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:517-621) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|149 KWVEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 490 500 510 520 530 540 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ 550 560 570 580 590 600 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::::::::: gi|149 IRDVGHGSTNVVDCM 610 620 >>gi|26326953|dbj|BAC27220.1| unnamed protein product [M (629 aa) initn: 728 init1: 728 opt: 728 Z-score: 955.4 bits: 184.4 E(): 1.6e-44 Smith-Waterman score: 728; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:525-629) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|263 KWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 500 510 520 530 540 550 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ 560 570 580 590 600 610 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::::::::: gi|263 IRDVGHGSTNVVDCM 620 >>gi|28380065|sp|P59280.1|KLHL8_MOUSE RecName: Full=Kelc (629 aa) initn: 728 init1: 728 opt: 728 Z-score: 955.4 bits: 184.4 E(): 1.6e-44 Smith-Waterman score: 728; 100.000% identity (100.000% similar) in 105 aa overlap (1-105:525-629) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|283 KWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 500 510 520 530 540 550 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|283 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ 560 570 580 590 600 610 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::::::::: gi|283 IRDVGHGSTNVVDCM 620 >>gi|24474096|gb|AAM51177.1| kelch-like protein [Mus mus (629 aa) initn: 723 init1: 723 opt: 723 Z-score: 948.9 bits: 183.2 E(): 3.8e-44 Smith-Waterman score: 723; 99.048% identity (100.000% similar) in 105 aa overlap (1-105:525-629) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|244 KWIEVKEMGQRRAGNGVSELHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 500 510 520 530 540 550 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ 560 570 580 590 600 610 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::.:::::: gi|244 IRDVGHGSNNVVDCM 620 >>gi|119626388|gb|EAX05983.1| kelch-like 8 (Drosophila), (354 aa) initn: 701 init1: 701 opt: 701 Z-score: 923.7 bits: 177.7 E(): 9.6e-43 Smith-Waterman score: 701; 96.190% identity (99.048% similar) in 105 aa overlap (1-105:250-354) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|119 KWIEVKEMGQRRAGNGVSKLHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 220 230 240 250 260 270 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ ::::::::::::::::::::::::::::::::::.::::: :::::::::::::.::::: gi|119 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCSCLTSQ 280 290 300 310 320 330 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::.:::::: gi|119 IRDVGHGSNNVVDCM 340 350 >>gi|51476262|emb|CAH18121.1| hypothetical protein [Homo (437 aa) initn: 701 init1: 701 opt: 701 Z-score: 922.4 bits: 177.7 E(): 1.1e-42 Smith-Waterman score: 701; 96.190% identity (99.048% similar) in 105 aa overlap (1-105:333-437) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|514 KWIEVKEMGQRRAGNGVSKLHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 310 320 330 340 350 360 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ ::::::::::::::::::::::::::::::::::.::::: :::::::::::::.::::: gi|514 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCSCLTSQ 370 380 390 400 410 420 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::.:::::: gi|514 IRDVGHGSNNVVDCM 430 >>gi|109074909|ref|XP_001096107.1| PREDICTED: similar to (544 aa) initn: 701 init1: 701 opt: 701 Z-score: 921.0 bits: 177.8 E(): 1.4e-42 Smith-Waterman score: 701; 96.190% identity (99.048% similar) in 105 aa overlap (1-105:440-544) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|109 KWIEVKEMGQRRAGNGVSKLHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ ::::::::::::::::::::::::::::::::::.::::: :::::::::::::.::::: gi|109 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCSCLTSQ 470 480 490 500 510 520 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::.:::::: gi|109 IRDVGHGSNNVVDCM 530 540 >>gi|34364841|emb|CAE45855.1| hypothetical protein [Homo (544 aa) initn: 701 init1: 701 opt: 701 Z-score: 921.0 bits: 177.8 E(): 1.4e-42 Smith-Waterman score: 701; 96.190% identity (99.048% similar) in 105 aa overlap (1-105:440-544) 10 20 30 mKIAA1 DDNSPLSSVERYDPRSNKWDYVAALTTPRG :::::::::::::::::::::::::::::: gi|343 KWIEVKEMGQRRAGNGVSKLHGCLYVVGGFDDNSPLSSVERYDPRSNKWDYVAALTTPRG 410 420 430 440 450 460 40 50 60 70 80 90 mKIAA1 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNKWELVGPVSHCRAGAGVAVCDCLTSQ ::::::::::::::::::::::::::::::::::.::::: :::::::::::::.::::: gi|343 GVGIATVMGKIFAVGGHNGNAYLNTVEAFDPVLNRWELVGSVSHCRAGAGVAVCSCLTSQ 470 480 490 500 510 520 100 mKIAA1 IRDVGHGSTNVVDCM ::::::::.:::::: gi|343 IRDVGHGSNNVVDCM 530 540 105 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 23:59:38 2009 done: Sat Mar 14 00:03:17 2009 Total Scan time: 518.800 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]