FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1942.ptfa, 431 aa vs ./tmplib.26680 library 1768586 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.6841+/-0.00543; mu= 11.2371+/- 0.364 mean_var=145.0998+/-34.297, 0's: 0 Z-trim: 15 B-trim: 0 in 0/36 Lambda= 0.1065 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1923 ( 1022 res) mfj01347 (1022) 272 54 7.1e-08 mKIAA0893 ( 1132 res) mbg01684 (1132) 219 46 2.1e-05 mKIAA4167 ( 342 res) mpj04828 ( 342) 201 42 7e-05 mKIAA4156 ( 368 res) mfj52041 ( 368) 166 37 0.003 mKIAA1645 ( 384 res) mfj18213 ( 384) 164 36 0.0039 mKIAA1374 ( 446 res) mpj01605 ( 446) 159 36 0.0072 >>mKIAA1923 ( 1022 res) mfj01347 (1022 aa) initn: 290 init1: 115 opt: 272 Z-score: 233.8 bits: 53.6 E(): 7.1e-08 Smith-Waterman score: 272; 28.485% identity (30.128% ungapped) in 165 aa overlap (204-367:93-249) 180 190 200 210 220 230 mKIAA1 DPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVP-GRLLTGDCQKNVHLWTPTEG :..:.:. .. .... .. : :. .: mKIAA1 SGRRFLYIVNLDAPFEGHRKISRQSKWDIGAVQWNPHDSFAHYFAASSNQRVDLYKWKDG 70 80 90 100 110 120 240 250 260 270 280 290 mKIAA1 GSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATAH : .: . :::: . ::.:. : .... :.:. : ::::. . : . .:.: mKIAA1 -SGEVGTT-LQGHTRVISDLDWAVFEPDLLVTSSVDTYIYIWDIKDTR-KPTVALSAVAG 130 140 150 160 170 300 310 320 330 340 350 mKIAA1 DGDVNVISWSRREPFLLSGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSG ..:. :.... :. . :: ...:: : : .. : . :.. . ...:::.. mKIAA1 ASQVK---WNKKNANYLATSHDGDVRIWDKR--KPSTAVEYLAAHLSKIHGLDWHPDSEH 180 190 200 210 220 230 360 370 380 390 400 410 mKIAA1 VFAASGADNQITQWDLAVERDPESGETETDPGLAALPQQLLFVHQGETDLKELHWHPQCP .::.:. ::.. :: mKIAA1 IFATSSQDNSVKFWDYRQPRKYLNILPCQVPVWKARYTPFSNGLVTVMVPQLRRENSLLL 240 250 260 270 280 290 >>mKIAA0893 ( 1132 res) mbg01684 (1132 aa) initn: 161 init1: 59 opt: 219 Z-score: 189.3 bits: 45.5 E(): 2.1e-05 Smith-Waterman score: 219; 28.421% identity (30.682% ungapped) in 190 aa overlap (180-366:950-1128) 150 160 170 180 190 200 mKIAA1 VAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFAL-DWS :. : : : . . ...:: :. .:: :: mKIAA0 HDGTIRDLAFMEGPESGGAILISAGAGDCNIYTTDCQ-RGQGLHALSGHTGHILALYTWS 920 930 940 950 960 970 210 220 230 240 250 260 mKIAA1 PRVPGRLL-TGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSA : .. .:. .:.:..: . : : : .: .. .:. ..:. . mKIAA0 ----GWMIASGSQDKTVRFWDLRVPSCVRVVGTTFHGTGSAVASVAVDPS-GRLLATGQE 980 990 1000 1010 1020 1030 270 280 290 300 310 320 mKIAA1 DASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKVWDLR-QFK :.: ..:::. :. :. . :..:: . .: .::.:. : .:: ::. .. mKIAA0 DSSCMLYDIRG--GR--MVQSYHPHSSDVRSVRFSPGAHYLLTGSYDMKIKVTDLQGDLT 1040 1050 1060 1070 1080 330 340 350 360 370 380 mKIAA1 SGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETETDPGLA . :. . .: : . .:: :: . : .:.:: .: : mKIAA0 KQLPLMVVGEHKDKVIQCRWHTQDLS-FLSSSADRTVTLWTYSG 1090 1100 1110 1120 1130 390 400 410 420 430 mKIAA1 ALPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTVFRTISV >>mKIAA4167 ( 342 res) mpj04828 (342 aa) initn: 160 init1: 103 opt: 201 Z-score: 180.0 bits: 42.1 E(): 7e-05 Smith-Waterman score: 209; 24.806% identity (29.358% ungapped) in 258 aa overlap (118-372:35-255) 90 100 110 120 130 140 mKIAA1 LMMLRMHNLHGTRPSPSEGSDDDEEDEDEEDEEEQKPQ--LELAMVPHYGGINRVRVSWL .:: :::. :.:... : ..:. :. : mKIAA4 EARANYRAGSMATEHLPAERAQSLLSAPRREEEPQKPNYALRLTLAGHSAAISSVKFSPN 10 20 30 40 50 60 150 160 170 180 190 200 mKIAA1 GEEPVAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFAL :: : .. .. :: :. .. : .. :: : . mKIAA4 GE------WLASSAAD---------------ALIIIWGAYDGNCKK--TLYGHSLEISDV 70 80 90 100 210 220 230 240 250 260 mKIAA1 DWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASC :: .::.... .:....: : . . ::. : ...: . . .: mKIAA4 AWSSD-SSRLVSASDDKTLKVWDMRSGKCL----KTLKGHSDFVFCCDFNPPSNLI-VSG 110 120 130 140 150 270 280 290 300 310 320 mKIAA1 SADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKVWDLRQF : : :..::.... :: : : : .::. ....... ...::. :: ..:: mKIAA4 SFDESVKIWEVKT--GK-C-LKTLSAHSDPISAVNFNCNGSLIVSGSYDGLCRIWDA--- 160 170 180 190 200 330 340 350 360 370 380 mKIAA1 KSGSPVATFKQH-MAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETETDPG ::. . :. .. ::. :.. :. . ...:. :: . :: . : mKIAA4 ASGQCLRTLADEGNPPVSFVKFSPNGKYILTAT-LDNTLKLWDYSRGRCLKTYTGHKNEK 210 220 230 240 250 260 390 400 410 420 430 mKIAA1 LAALPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTVFRTISV mKIAA4 YCLFASFSVTGRKWVVSGSEDNMVYIWNLQTKEIVQRLQGHTDVVISAACHPTKNIIASA 270 280 290 300 310 320 >>mKIAA4156 ( 368 res) mfj52041 (368 aa) initn: 149 init1: 65 opt: 166 Z-score: 150.6 bits: 36.7 E(): 0.003 Smith-Waterman score: 171; 34.579% identity (38.144% ungapped) in 107 aa overlap (240-346:156-252) 210 220 230 240 250 260 mKIAA1 RVPGRLLTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADA : : ::.. : :. ::..:: : : : : mKIAA4 YTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDT-FISGSLDK 130 140 150 160 170 180 270 280 290 300 310 320 mKIAA1 SIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKVWDLRQFKSGS .::.::.:. .. : : : :.. . .. .: .. .:..:::.: .: mKIAA4 TIRLWDLRSPNCQGLM------HLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKG- 190 200 210 220 230 330 340 350 360 370 380 mKIAA1 PVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETETDPGLAALP : ::::... . :: mKIAA4 PFATFKMQYD--RTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKA 240 250 260 270 280 290 >>mKIAA1645 ( 384 res) mfj18213 (384 aa) initn: 128 init1: 65 opt: 164 Z-score: 148.7 bits: 36.4 E(): 0.0039 Smith-Waterman score: 164; 23.673% identity (26.977% ungapped) in 245 aa overlap (186-412:112-344) 160 170 180 190 200 210 mKIAA1 EKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPG-- :.: . . .. :: :.: : .: mKIAA1 TLHFCPPSQAAGNPLLFSGSQNGLVHIWSLQTR-RIVTTLNGHGGQGVI--WLKTLPQGH 90 100 110 120 130 220 230 240 250 260 270 mKIAA1 RLLTGDCQKNVHLWTPTEGGSWNVD--QRPFVGHTRSVEDLQWSPTEDTVFASCSADASI .::. . . :: :: . .: : :: :. .. . . . ..: . mKIAA1 QLLSQGRDLRLCLWDLEEGRNTIMDSVQLDSVGFCRGSILVRGQQCWMLAVPGKGSDE-V 140 150 160 170 180 190 280 290 300 310 320 mKIAA1 RIWDIRAAPGKA--CMLTT-ATAHDG-DVNVISW---SRREPFLLSGGDDGALKVWDLRQ .: .. :.:. : : : :. : . . : : .:.::.: .::.. .::. . mKIAA1 QILEM---PSKTSVCTLKPEADARPGMPMCLGLWQTNSSLRPLLLAGYEDGSVTLWDISE 200 210 220 230 240 250 330 340 350 360 370 380 mKIAA1 FKSGSPVATFKQHMAPVTSVEWHPQDS-GVFAASGADNQITQWDLAVERDPESGETE--T : : .. : :: .... : . :. ...: . .. :.: ... . .:. : mKIAA1 RKVCSQITC---HEEPVMGLDFDSQKAKGISGSAG--KVLAVWSLDDQQSLQVKKTHELT 260 270 280 290 300 390 400 410 420 430 mKIAA1 DPGLAAL---PQQLLFVHQG-ETDLKELHWHPQCPGVLISTALSGFTVFRTISV .::.: . :.. ... : . .. .::. . : mKIAA1 NPGIAEVTIRPDHKILATAGWDHRIRVFHWRTMKPLAVLAFHSAPVYCVAFAADGLLAAG 310 320 330 340 350 360 mKIAA1 SKDQRISIWSLYPCP 370 380 >>mKIAA1374 ( 446 res) mpj01605 (446 aa) initn: 152 init1: 99 opt: 159 Z-score: 143.9 bits: 35.8 E(): 0.0072 Smith-Waterman score: 174; 23.936% identity (27.108% ungapped) in 188 aa overlap (194-377:108-277) 170 180 190 200 210 220 mKIAA1 ALRRLLQVVDDPQALAIFLRDEQARIKPIFSFAGHMGEGFALDWSPRVPGRLLTGDCQKN : .: : .: :. . . . .:. . . mKIAA1 IKKQTQAESFVLTSSDGKFHLISKLGRVEKSVEAHCGAVLAGRWNYEGTALVTVGE-DGQ 80 90 100 110 120 130 230 240 250 260 270 280 mKIAA1 VHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKA :..:. : .. . .. . : .. :.: . :. . . . :. . : mKIAA1 VKIWSKT-----GMLRSTLAQQGTPVYSVAWGPDSEKVLYTAGKQLIIKPLQPNAK---- 140 150 160 170 180 290 300 310 320 330 340 mKIAA1 CMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTS . :::: . ..:. . ..::.:.: :::: . : . . : :.:: mKIAA1 --VLQWKAHDGIILKVDWNSVNDLILSAGEDCKYKVWD----SYGRVLYGSQPHEHPITS 190 200 210 220 230 240 350 360 370 380 390 mKIAA1 VEWHPQDSGVFAASGADN----QITQWDLAVERDPESGETETDPGLAALPQQLLFVHQGE : : : :. .::... . . : :. :.:. :..: mKIAA1 VAWAP-DGELFAVGSFHTLRLCDKTGWSYALEK-PNTGSIFNIAWSIDGTQIAGACGNGH 250 260 270 280 290 400 410 420 430 mKIAA1 TDLKELHWHPQCPGVLISTALSGFTVFRTISV mKIAA1 VVFAHVVEQRWEWKNFQVTLTKRRTMQVRNVLNDAVDLLEFRDRVIKASLNHAHLVVSTS 300 310 320 330 340 350 431 residues in 1 query sequences 1768586 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:56:20 2006 done: Mon Mar 27 10:56:20 2006 Scan time: 0.640 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]