FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1193.ptfa, 524 aa vs ./tmplib.26680 library 1768493 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.7575+/-0.00633; mu= 4.5168+/- 0.421 mean_var=256.7987+/-59.554, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.0800 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1610 ( 554 res) mpm01218 ( 554) 866 113 7e-26 mKIAA1343 ( 395 res) mbp04105 ( 395) 198 35 0.0094 >>mKIAA1610 ( 554 res) mpm01218 (554 aa) initn: 927 init1: 688 opt: 866 Z-score: 557.0 bits: 112.8 E(): 7e-26 Smith-Waterman score: 949; 45.042% identity (47.321% ungapped) in 353 aa overlap (23-361:51-400) 10 20 30 40 50 mKIAA1 GRPHWCLSRPISTQIPHPAYLLNSSTVVSMGSADHQFN-LAELLTQNYNLQE .:: : : ::.:. :..:..... .. mKIAA1 AENVHQMFMFNWFTDCLWILFLSNYKPSVESSSPGGSATSEDHEFDPSADMLVHDFDDER 30 40 50 60 70 80 60 70 80 90 100 110 mKIAA1 GCAEAPQCPDKPEEELDKDFIDQSSDMPLDELLALYGYESSDPISEQESEGGDTAPALPD : . . . . . . . .:::. :::.::::.:. . :.: : . . : mKIAA1 TLEEEEMMEGETNFSSEIEDLAREGDMPIHELLSLYGYDSTVRLPEEEEEEEEEEEGEDD 90 100 110 120 130 140 120 130 140 150 160 mKIAA1 MTLDKIAKDLLSGE-----------EEEETQSSADDLTPSVTSHEASDLFHNQSGSRFLA :. .. ::: .:.::::: :: . ::::..:..... . . : mKIAA1 EDADNDDNSGCSGENKEENIKDSSGQEDETQSSNDDPSQSVTSQDAQEIIRPRRCKYF-- 150 160 170 180 190 170 180 190 200 210 mKIAA1 GDNGPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNI-LHLNRHCDKIYENEDQLLWS :.. :. .:: .:.. ::::::: .:::.. . . .. .:.:::.:::::. mKIAA1 -DTNSEIEEESEEDEDYIPSEDWKKEIMVGSMFQAEIPVGVCRYKENEKVYENDDQLLWD 200 210 220 230 240 250 220 230 240 250 260 270 mKIAA1 PSVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEALRRLR : :::..: :: : .: .: . :::: .::.::::::::::.:..:::::::: mKIAA1 PECLPEEKVVVFLKDASRRTGDEKGVEAIPEGSHIKDNEQALYELVKCSFDTEEALRRLR 260 270 280 290 300 310 280 290 300 310 320 330 mKIAA1 FNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWKKSER ::::. :. : .:.::::::::.:....::.:::::::::::::::::: .::.:::::: mKIAA1 FNVKAAREELSVWTEEECRNFEQGLKAYGKDFHLIQANKVRTRSVGECVAFYYMWKKSER 320 330 340 350 360 370 340 350 360 370 380 390 mKIAA1 YDYFAQQTRLGRRKF-VSSGTTDTEQDLDGLDPDGHARLHSENVDIEAGGLDQPGVGSDD ::.::::::.:..:. . :.:: mKIAA1 YDFFAQQTRFGKKKYNLHPGVTDYMDRLLDESESAASSRAPSPPPTASNSSNSQSEKEDG 380 390 400 410 420 430 >>mKIAA1343 ( 395 res) mbp04105 (395 aa) initn: 191 init1: 73 opt: 198 Z-score: 141.8 bits: 35.5 E(): 0.0094 Smith-Waterman score: 228; 25.294% identity (28.667% ungapped) in 340 aa overlap (189-515:3-315) 160 170 180 190 200 210 mKIAA1 LAGDNGPGSSASSDTEEDALPANKCKKEIMVGPQFQADLNILH--LNRHCDKIYENEDQL :: ..:: . . ... :: .: .: mKIAA1 MRVGAEYQARIPEFDPGATKYTDK--DNGGML 10 20 30 220 230 240 250 260 270 mKIAA1 LWSP-SVLPEREVEEFLYRAVKRRWQEMAGPQIPEGEVVKDSEQALYELVKCNFNVEEAL .::: .:. ...:.. : .: : .. :::: : . :.:..: mKIAA1 VWSPYHSIPDAKLDEYIAIA-----KEKHGYNV---------EQALGMLFWHKHNIEKSL 40 50 60 70 280 290 300 310 320 330 mKIAA1 RRLRFNVKVIRDGLCAWSEEECRNFEHGFRVHGKNFHLIQANKVRTRSVGECVEYYYLWK : : . : :. :. ::..: :::.:: :: . . .... :.::: :: mKIAA1 ADLP-NFTPFPD---EWTVEDKVLFEQAFSFHGKSFHRIQ-QMLPDKTIASLVKYYYSWK 80 90 100 110 120 130 340 350 360 370 380 390 mKIAA1 KSE-RYDYFAQQTR-LGRRKFVSSGTTDTEQ--DLDGLDPDGHARLHSENVDIEAGGLDQ :.. : . . .:.: :. :. ... :.:. .:: : : . ... . :. :: mKIAA1 KTRSRTSLMDRQARKLANRHNQGDSDDDVEEAHPMDGNDSDYDPKKEAK----REGNADQ 140 150 160 170 180 400 410 420 430 440 mKIAA1 P------GVGSDDLPSSEPGPRPFQQLDEPPAVPSLQQPTSLAASAELPPAAAAAPEPGT : :.: . : . . .. .:: : : .:.: : :: . . mKIAA1 PVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCS-PNAANTILRQLD 190 200 210 220 230 240 450 460 470 480 490 500 mKIAA1 SPRLPVDLALPEELPLVSSPVALSEDTAEPMAPAQVALSVTEFGLIGIGDVNPFLTGHPA . . . . . :. : : . : . : . .: . : : :. mKIAA1 MELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPE-AQTPQAPRTLGPSPPAPSSTPTPT 250 260 270 280 290 300 510 520 mKIAA1 CPTSTLHSEPLSQCNVMTC : .::.. : mKIAA1 VPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPR 310 320 330 340 350 360 524 residues in 1 query sequences 1768493 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:38:06 2006 done: Mon Mar 27 10:38:06 2006 Scan time: 0.730 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]