FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mFLJ00256.ptfa, 1000 aa
vs ./tmplib.26680 library
1768017 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 4.6565+/-0.0043; mu= 18.3185+/- 0.289
mean_var=96.4032+/-21.196, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36
Lambda= 0.1306
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA1027 ( 2564 res) mia05043 (2564) 229 55 1.6e-07
mKIAA1200 ( 1447 res) mbg09531 (1447) 201 49 4.4e-06
mKIAA1688 ( 1088 res) mfj01567 (1088) 144 38 0.0063
>>mKIAA1027 ( 2564 res) mia05043 (2564 aa)
initn: 68 init1: 68 opt: 229 Z-score: 227.4 bits: 54.9 E(): 1.6e-07
Smith-Waterman score: 236; 21.515% identity (23.826% ungapped) in 330 aa overlap (686-992:112-432)
660 670 680 690 700 710
mFLJ00 HRVLRVGPRKQPPHDVEVKAAEQNVSKLHHEVYLPNDTSKSMEVGSSSRVRDLCEGIGTR
.. . . : :.. : .:. : :. : .:
mKIAA1 GIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICAR
90 100 110 120 130 140
720 730 740 750
mFLJ00 LQLASWDGCSLFIKITDKVISLKEGDFFFDS-----------LRQ---VSD---WVKKNR
. ... : :: .. .. . : . :. :.: ..: :. ..:
mKIAA1 IGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHTDDELNWLDHGR
150 160 170 180 190 200
760 770 780 790 800 810
mFLJ00 PQKEGASVTLPYQVFFMRKLWLNVTPGKDVNADTI---LHYHQELPKYLRGFHKCSREDA
.: . . ......:. .. . : . : . : : : : : : : . :
mKIAA1 TLREQG--VEEHETLLLRRKFFYSDQNVD-SRDPVQLNLLYVQARDDILNGSHPVSFDKA
210 220 230 240 250
820 830 840 850 860 870
mFLJ00 IHLGGLICKIQFGSDSSQLASVSKV-LKELVPQNLTRLMSSEEWKKSLLLECDKN-KRKT
...:. :.:::: . : ... . ::...:.. .. . .. ... :: . .
mKIAA1 CEFAGFQCQIQFGPHNEQKHKAGFLDLKDFLPKEYVKQKGERK-----IFQAHKNCGQMS
260 270 280 290 300 310
880 890 900 910 920 930
mFLJ00 VAEAKVEFLKYMYRWPTFGSAFFEVKQTSEPSYPDI-LLIAINRHGLLLIHPKTKELLNT
::::...: :.: .:: ::. . . . :..:... .. . ::::...
mKIAA1 EIEAKVRYVKLARSLKTYGVSFFLVKEKMKGKNKLVPRLLGITKECVMRVDEKTKEVIQE
320 330 340 350 360 370
940 950 960 970 980 990
mFLJ00 YPFTKISSWSSGNTYFHMALGSLGQGSRLLCETSLGYKMDDLLTSYVQQLLNTVNKQRGF
. .:.:. :... : . .:. .: . .:. : .. .:...:.. .:. ... :
mKIAA1 WSLTNIKRWAASPKSFTLDFGDYQDGYYSV-QTTEGEQIAQLIAGYIDIILKKKKSKDHF
380 390 400 410 420 430
1000
mFLJ00 RAPAPANP
mKIAA1 GLEGDEESTMLEDSVSPKKSTVLQQQYNRVGKVEHGSVALPAIMRSGASGPENFQVGSMP
440 450 460 470 480 490
>>mKIAA1200 ( 1447 res) mbg09531 (1447 aa)
initn: 185 init1: 70 opt: 201 Z-score: 201.5 bits: 49.3 E(): 4.4e-06
Smith-Waterman score: 329; 21.486% identity (24.541% ungapped) in 498 aa overlap (551-1000:944-1427)
530 540 550 560 570 580
mFLJ00 SRGHLWAYSPEPLRQPLLKSVHDKAKLRDAACQIFLAILKYTGDYPSRQSWHSLELTDQM
.::.:. . ... ..: . :..
mKIAA1 MLCYSQEGLCASLTTLPSEALQTEALKLFKSCQLFINVPVEAASV----DYH-VSLAQTA
920 930 940 950 960
590 600 610 620 630
mFLJ00 FSLALQDPALQDELYCQILKQLT-HNSIRFSEERAWQLLWLCTGLFPPGKTLL----PHA
... : : ::.:.:::..::.. . ..: . :::: ::. :: : . .: .
mKIAA1 LQVCLVHPELQSEIYCQLMKQISCRPPQKYSLMQCWQLLALCAPLFLPQHHFLWYVKQQL
970 980 990 1000 1010 1020
640 650 660 670 680
mFLJ00 QKFIDSRKKK-PLALDCSRRLHRVLRVGPRKQPPHDVEVKAAEQNVSKLHHE------VY
:. : :.. :. :.: ..:.:..: :. : .:: . . .:: :.
mKIAA1 QRHADPRSETGQYAIYCQRAVERTLQTGEREARPSRMEVVSILLR-NPFHHSLPFSIPVH
1030 1040 1050 1060 1070 1080
690 700 710 720 730 740
mFLJ00 LPNDTSKSMEVGSSSRVRDLCEGIG--TRLQLASWDGCSLFIKITDKVISLKEGDFFFDS
. : : . . .:: : .. . .. : .. : .: .:: :: : .. . ...
mKIAA1 FANGTYQVVGFDGSSTVDEFLQRLNQETGMRKPSQSGFALF---TDDP-SGRDLEHCLQG
1090 1100 1110 1120 1130 1140
750 760 770 780 790
mFLJ00 LRQVSD----W---VKKNRPQK-EGASVTLPYQVFFMRKLWLNVTPGKDVNADTILHYHQ
.. : : .:. .: : ::.. .. .... .:.. ... . .: :
mKIAA1 RVKICDAISKWEQTLKELHPGKSEGGTRVV--KLMYKNRLYFRSQVKGETERERLLLAFQ
1150 1160 1170 1180 1190 1200
800 810 820 830 840
mFLJ00 ELPKYLRGFHKCSREDAIHLGGLICKIQFGS---------DSSQLASVSKVLKELVPQNL
. . : ..: :.....:. ....:. .. :.....:.... .
mKIAA1 ASGEIVAGRFPVTKELALEMAALMAQVEYGDLEKPTLPGPGGTPPAKAQHLLQQVLDRFY
1210 1220 1230 1240 1250 1260
850 860 870 880 890 900
mFLJ00 TRLMSSEEWKKSLLLECDKNKRKTVA-------EAKVEFLKYMYRWPTFGSAFFEVKQTS
: . . ..: : : .: : .: .:: ::. .: .. ..
mKIAA1 PRRYRNGAPPEQLRHLADMMATKWAALQGCSPPECIRIYLTVARKWPLFGAKLFAAQPAQ
1270 1280 1290 1300 1310 1320
910 920 930 940 950 960
mFLJ00 -EPSYPDILLIAINRHGLLLIHPKTKELLNTYPFTKISSWSSGNTYFHMALGSL-GQGSR
:. .. ::.:. :. .. .: .. :::......... : ... :. :.:
mKIAA1 LSPKENTVVWIAVNEDGVSILDHRTMQVNITYPYSSVTTFGGCRDDFMLVIRSIPDQSSG
1330 1340 1350 1360 1370 1380
970 980 990 1000
mFLJ00 LLCETSLGYKMDD--------LLTSYVQQLLNTVNKQRGFRAPAPANP
.: ..: ...::... ::: . . :: .:
mKIAA1 KTRIDKLTFRMPAPKITETTLMMASYMNHCSATVNLSA--KLPAARQPRDLDGQFFASVS
1390 1400 1410 1420 1430
mKIAA1 CTKGSALL
1440
>>mKIAA1688 ( 1088 res) mfj01567 (1088 aa)
initn: 234 init1: 144 opt: 144 Z-score: 144.8 bits: 38.4 E(): 0.0063
Smith-Waterman score: 200; 22.222% identity (25.101% ungapped) in 279 aa overlap (424-680:619-887)
400 410 420 430 440
mFLJ00 QDRRATDDITLLPFKKGDLLILTKKQGLLASENWALGQNDRTG-------KTGLVPTACL
:..: . :. : :. : :
mKIAA1 GYESDGAVPLPMPGPVVRAFSEDEALAQQDSKHWKRSTFDKLGFPQILLEKSVSVQTNLA
590 600 610 620 630 640
450 460 470 480 490 500
mFLJ00 YTIPSVTKPSTQLLSLLAM--SPEKRKLAAQEVRALEPPLEDQLTESPYTLEEFSYQFFR
: . ... :. :. : .. . : . : . . : .:... . :
mKIAA1 SPEPHLHPSQSEDLGACAQFESSRQNRSAMPSSSCVFPTFTLRKPSSETDIENWASKHFN
650 660 670 680 690 700
510 520 530 540 550 560
mFLJ00 APEKETISRAAMPMARSRGHLWAYSPEPLRQPLLKSVHDKAKLRDAACQIFLAILKYTGD
. . : . : ... :.: : ...:.. : . ... ::.:: : : ::
mKIAA1 KHTQGLFRRKV-----SIANMLAWSSESIKKPMI--VTSDRHVKKEACEIFKLIQMYMGD
710 720 730 740 750 760
570 580 590 600 610 620
mFLJ00 YPSRQSWHSLELTDQMFSLALQDPALQDELYCQILKQLTHNSIRFSEERAWQLLWLCTGL
: . :... .. . . . .:.:::: :. .: :.: : :.:.:. .: ..
mKIAA1 R--RAKADPLHVALEIATKGWSAQGLRDELYIQLCRQTTENFRLESLARGWELMAICLAF
770 780 790 800 810
630 640 650 660 670
mFLJ00 FPPGKTLLPHAQKFIDSRKKKPL-----------ALDCSRRLHRVLRVGPRK--QPPHDV
::: . . . .: :. :. : : ..:... .: .: . :.
mKIAA1 FPPTPKFHSYLEGYI-YRHMDPVNDTKGVAISTYAKYCYHKLQKAALTGAKKGLKKPNVE
820 830 840 850 860 870
680 690 700 710 720 730
mFLJ00 EVKAAEQNVSKLHHEVYLPNDTSKSMEVGSSSRVRDLCEGIGTRLQLASWDGCSLFIKIT
:.. :.. :
mKIAA1 EIRHAKNAVFSPSMFGSALQEVMSMQKERYPDRQLPWVQTRLSEEVLALNGDQTEGIFRV
880 890 900 910 920 930
1000 residues in 1 query sequences
1768017 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:08:39 2006 done: Mon Mar 27 10:08:40 2006
Scan time: 1.060 Display time: 0.180
Function used was FASTA [version 3.4t11 Apr 17, 2002]