FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1105.ptfa, 292 aa
 vs ./tmplib.26680 library

1768725 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.5527+/-0.00453; mu= 7.2276+/- 0.302
 mean_var=91.0262+/-20.837, 0's: 0 Z-trim: 3  B-trim: 17 in 1/35
 Lambda= 0.1344

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA2006  ( 2383 res)   meg00878                  (2383)  221   53 1.3e-07


>>mKIAA2006  ( 2383 res)   meg00878                       (2383 aa)
 initn: 191 init1: 110 opt: 221  Z-score: 228.8  bits: 53.3 E(): 1.3e-07
Smith-Waterman score: 221;  33.645% identity (33.962% ungapped) in 107 aa overlap (1-106:2268-2374)

                                             10        20        30
mKIAA1                               QWKIHCKFQKKLKELGRMNTKALSLLTLLN
                                     .: .: . .:.:::  :... : .   .:.
mKIAA2 SDDVILESLTLVQLKEILKILEKLNENGKWKWLLHYRESKNLKEDVRVDSIAHKKNLILK
      2240      2250      2260      2270      2280      2290       

               40        50         60        70        80         
mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEM-DCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDN
        ::. .....: ::.::: . .  :.  ::. :: :.:. :  ::::.:    .  . .:
mKIAA2 SYQSVNIIDLLHYHNCDSPSSTKAEIFKCLLNLQIQHISARFAVFLTDKPTVSTEIFENN
      2300      2310      2320      2330      2340      2350       

      90       100       110       120       130       140         
mKIAA1 GIVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDS
       ::.:. .. : .:. ...                                          
mKIAA2 GILVTDVNYFTENIQKIAAPFRSSYW                                  
      2360      2370      2380                                     




292 residues in 1 query   sequences
1768725 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:36:13 2006 done: Mon Mar 27 10:36:13 2006
 Scan time:  0.520 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]