# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mej01470.fasta.nr -Q ../query/mKIAA1105.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1105, 292 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921059 sequences Expectation_n fit: rho(ln(x))= 5.3583+/-0.000183; mu= 7.0134+/- 0.010 mean_var=69.7763+/-13.552, 0's: 43 Z-trim: 45 B-trim: 0 in 0/65 Lambda= 0.153540 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148692781|gb|EDL24728.1| mCG117568, isoform CRA (1404) 1887 427.3 7.5e-117 gi|158564325|sp|Q69ZR9.2|CC063_MOUSE RecName: Full (1610) 1887 427.3 8.4e-117 gi|168823452|ref|NP_001108351.1| retinoblastoma-as (1640) 1887 427.4 8.6e-117 gi|149015710|gb|EDL75058.1| rCG39181 [Rattus norve (1115) 1745 395.8 1.8e-107 gi|109503674|ref|XP_001055601.1| PREDICTED: simila (1219) 1745 395.8 2e-107 gi|149728795|ref|XP_001490562.1| PREDICTED: simila (1450) 1557 354.2 7.8e-95 gi|73985236|ref|XP_858115.1| PREDICTED: similar to (1614) 1556 354.0 1e-94 gi|73985238|ref|XP_849196.1| PREDICTED: similar to (1634) 1556 354.0 1e-94 gi|119585723|gb|EAW65319.1| chromosome 3 open read (1213) 1554 353.5 1.1e-94 gi|163838629|ref|NP_056039.2| retinoblastoma-assoc (1233) 1554 353.5 1.1e-94 gi|5881256|gb|AAD55098.1|AF180425_1 retinoblastoma (1233) 1554 353.5 1.1e-94 gi|119585724|gb|EAW65320.1| chromosome 3 open read (1233) 1554 353.5 1.1e-94 gi|11385664|gb|AAG34913.1|AF273053_1 CTCL tumor an (1035) 1553 353.3 1.1e-94 gi|119585725|gb|EAW65321.1| chromosome 3 open read (1274) 1554 353.5 1.1e-94 gi|119585727|gb|EAW65323.1| chromosome 3 open read (1670) 1554 353.6 1.4e-94 gi|158563999|sp|Q9UK61.2|CC063_HUMAN RecName: Full (1670) 1554 353.6 1.4e-94 gi|114587449|ref|XP_001173422.1| PREDICTED: retino (1233) 1546 351.7 3.7e-94 gi|114587447|ref|XP_001173403.1| PREDICTED: retino (1609) 1546 351.8 4.6e-94 gi|114587445|ref|XP_001173424.1| PREDICTED: retino (1629) 1546 351.8 4.7e-94 gi|109038080|ref|XP_001096938.1| PREDICTED: simila (1647) 1545 351.6 5.5e-94 gi|119914576|ref|XP_870219.2| PREDICTED: chromosom (1430) 1533 348.9 3.1e-93 gi|194677310|ref|XP_587195.4| PREDICTED: chromosom (1548) 1533 348.9 3.3e-93 gi|126336691|ref|XP_001362214.1| PREDICTED: simila (1264) 1126 258.7 3.8e-66 gi|224066058|ref|XP_002193313.1| PREDICTED: chromo (1680) 1098 252.6 3.6e-64 gi|67972302|dbj|BAE02493.1| unnamed protein produc ( 226) 1033 237.7 1.5e-60 gi|163838637|ref|NP_083221.1| retinoblastoma-assoc (1498) 857 199.2 3.8e-48 gi|73985234|ref|XP_858074.1| PREDICTED: similar to (1477) 798 186.1 3.2e-44 gi|73985232|ref|XP_533784.2| PREDICTED: similar to (1518) 798 186.1 3.3e-44 gi|120538515|gb|AAI29988.1| C3orf63 protein [Homo (1116) 787 183.6 1.4e-43 gi|119585726|gb|EAW65322.1| chromosome 3 open read (1328) 787 183.6 1.6e-43 gi|163838631|ref|NP_001106207.1| retinoblastoma-as (1512) 787 183.7 1.8e-43 gi|114587451|ref|XP_001173436.1| PREDICTED: retino (1512) 787 183.7 1.8e-43 gi|154425900|gb|AAI51348.1| C22H3ORF63 protein [Bo (1098) 784 182.9 2.2e-43 gi|118096868|ref|XP_414341.2| PREDICTED: similar t (1654) 722 169.3 4.2e-39 gi|49903384|gb|AAH76767.1| MGC83207 protein [Xenop (1094) 688 161.7 5.5e-37 gi|123896288|sp|Q2T9I9.1|CC063_XENLA RecName: Full (1555) 664 156.4 2.9e-35 gi|47223146|emb|CAG11281.1| unnamed protein produc ( 605) 390 95.5 2.5e-17 gi|189535908|ref|XP_001922150.1| PREDICTED: simila (2069) 378 93.2 4.3e-16 gi|47215589|emb|CAG10760.1| unnamed protein produc (1533) 283 72.0 7.3e-10 gi|47223143|emb|CAG11278.1| unnamed protein produc (1337) 282 71.8 7.6e-10 gi|194672279|ref|XP_001253615.2| PREDICTED: simila (2382) 253 65.5 1.1e-07 gi|73949170|ref|XP_535198.2| PREDICTED: similar to (2546) 245 63.7 3.8e-07 gi|82571687|gb|AAI10340.1| C10orf18 protein [Homo ( 313) 233 60.6 4.3e-07 gi|10437137|dbj|BAB14993.1| unnamed protein produc ( 309) 232 60.3 4.9e-07 gi|10440023|dbj|BAB15627.1| unnamed protein produc ( 493) 233 60.7 6.2e-07 gi|10434663|dbj|BAB14336.1| unnamed protein produc ( 542) 233 60.7 6.7e-07 gi|211827801|gb|AAH01759.2| C10orf18 protein [Homo ( 769) 233 60.8 9e-07 gi|34535234|dbj|BAC87251.1| unnamed protein produc (1636) 233 61.0 1.7e-06 gi|194227198|ref|XP_001917014.1| PREDICTED: simila (2696) 235 61.5 1.9e-06 gi|7020406|dbj|BAA91115.1| unnamed protein product ( 741) 227 59.4 2.2e-06 >>gi|148692781|gb|EDL24728.1| mCG117568, isoform CRA_a [ (1404 aa) initn: 1887 init1: 1887 opt: 1887 Z-score: 2254.1 bits: 427.3 E(): 7.5e-117 Smith-Waterman score: 1887; 100.000% identity (100.000% similar) in 292 aa overlap (1-292:1113-1404) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::::::::::::::::::::::::::::: gi|148 SILNLEVVTIESLKIFLTFLEELSTPEGKWQWKIHCKFQKKLKELGRMNTKALSLLTLLN 1090 1100 1110 1120 1130 1140 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG 1150 1160 1170 1180 1190 1200 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG 1210 1220 1230 1240 1250 1260 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS 1270 1280 1290 1300 1310 1320 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS 1330 1340 1350 1360 1370 1380 280 290 mKIAA1 QENENYFLSAYKNSGTEKSPLS :::::::::::::::::::::: gi|148 QENENYFLSAYKNSGTEKSPLS 1390 1400 >>gi|158564325|sp|Q69ZR9.2|CC063_MOUSE RecName: Full=Unc (1610 aa) initn: 1887 init1: 1887 opt: 1887 Z-score: 2253.2 bits: 427.3 E(): 8.4e-117 Smith-Waterman score: 1887; 100.000% identity (100.000% similar) in 292 aa overlap (1-292:1319-1610) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::::::::::::::::::::::::::::: gi|158 SILNLEVVTIESLKIFLTFLEELSTPEGKWQWKIHCKFQKKLKELGRMNTKALSLLTLLN 1290 1300 1310 1320 1330 1340 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG 1350 1360 1370 1380 1390 1400 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG 1410 1420 1430 1440 1450 1460 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS 1470 1480 1490 1500 1510 1520 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS 1530 1540 1550 1560 1570 1580 280 290 mKIAA1 QENENYFLSAYKNSGTEKSPLS :::::::::::::::::::::: gi|158 QENENYFLSAYKNSGTEKSPLS 1590 1600 1610 >>gi|168823452|ref|NP_001108351.1| retinoblastoma-associ (1640 aa) initn: 1887 init1: 1887 opt: 1887 Z-score: 2253.1 bits: 427.4 E(): 8.6e-117 Smith-Waterman score: 1887; 100.000% identity (100.000% similar) in 292 aa overlap (1-292:1349-1640) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::::::::::::::::::::::::::::: gi|168 SILNLEVVTIESLKIFLTFLEELSTPEGKWQWKIHCKFQKKLKELGRMNTKALSLLTLLN 1320 1330 1340 1350 1360 1370 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG 1380 1390 1400 1410 1420 1430 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG 1440 1450 1460 1470 1480 1490 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS 1500 1510 1520 1530 1540 1550 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|168 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS 1560 1570 1580 1590 1600 1610 280 290 mKIAA1 QENENYFLSAYKNSGTEKSPLS :::::::::::::::::::::: gi|168 QENENYFLSAYKNSGTEKSPLS 1620 1630 1640 >>gi|149015710|gb|EDL75058.1| rCG39181 [Rattus norvegicu (1115 aa) initn: 1745 init1: 1745 opt: 1745 Z-score: 2085.6 bits: 395.8 E(): 1.8e-107 Smith-Waterman score: 1745; 93.151% identity (96.918% similar) in 292 aa overlap (1-292:824-1115) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::::::::::::::::::::::::::::: gi|149 SVLNPEVVTIESLKNFLTFLEELSTPEGKWQWKIHCKFQKKLKELGRMNTKALSLLTLLN 800 810 820 830 840 850 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG ::::.:::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|149 VYQKRHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSNYTDNG 860 870 880 890 900 910 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG :::::.::::::::::::::::::::.:: .::::::::::::::::::::::::::::: gi|149 IVVATAEDFMQNFTSLVGYHNSVTEENLPSMLGANENLESQSALLENDEKDEEDMSLDSG 920 930 940 950 960 970 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS :::::::::::::::::: :::::::::::::::::::::::::.:::::.::::::. gi|149 DEISHIEVFSNVHSEILARETKGSSGTDQKKNIQIELQSSLDVQTSLLEDQTYLIDCDER 980 990 1000 1010 1020 1030 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS :::::: ::::.:::::::::::::: ::::.:::: :::::::::::::::::::::.: gi|149 APIDRVRSEGENSNSAEQDAYSDFQAYQNQLKMSHQFSHFNVLTHQTFLGTPYALSSTQS 1040 1050 1060 1070 1080 1090 280 290 mKIAA1 QENENYFLSAYKNSGTEKSPLS ::::::::::::: ::::::: gi|149 QENENYFLSAYKNLDTEKSPLS 1100 1110 >>gi|109503674|ref|XP_001055601.1| PREDICTED: similar to (1219 aa) initn: 1745 init1: 1745 opt: 1745 Z-score: 2085.0 bits: 395.8 E(): 2e-107 Smith-Waterman score: 1745; 93.151% identity (96.918% similar) in 292 aa overlap (1-292:928-1219) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::::::::::::::::::::::::::::: gi|109 SVLNPEVVTIESLKNFLTFLEELSTPEGKWQWKIHCKFQKKLKELGRMNTKALSLLTLLN 900 910 920 930 940 950 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG ::::.:::::::::::::::::::::::::::::::::::::::::::::::::.::::: gi|109 VYQKRHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSNYTDNG 960 970 980 990 1000 1010 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG :::::.::::::::::::::::::::.:: .::::::::::::::::::::::::::::: gi|109 IVVATAEDFMQNFTSLVGYHNSVTEENLPSMLGANENLESQSALLENDEKDEEDMSLDSG 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS :::::::::::::::::: :::::::::::::::::::::::::.:::::.::::::. gi|109 DEISHIEVFSNVHSEILARETKGSSGTDQKKNIQIELQSSLDVQTSLLEDQTYLIDCDER 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS :::::: ::::.:::::::::::::: ::::.:::: :::::::::::::::::::::.: gi|109 APIDRVRSEGENSNSAEQDAYSDFQAYQNQLKMSHQFSHFNVLTHQTFLGTPYALSSTQS 1140 1150 1160 1170 1180 1190 280 290 mKIAA1 QENENYFLSAYKNSGTEKSPLS ::::::::::::: ::::::: gi|109 QENENYFLSAYKNLDTEKSPLS 1200 1210 >>gi|149728795|ref|XP_001490562.1| PREDICTED: similar to (1450 aa) initn: 1565 init1: 838 opt: 1557 Z-score: 1858.9 bits: 354.2 E(): 7.8e-95 Smith-Waterman score: 1557; 83.390% identity (92.881% similar) in 295 aa overlap (1-292:1143-1436) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::.:::::::::::::.:.:::::::::: gi|149 SILNPEVITIENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNSKALSLLTLLN 1120 1130 1140 1150 1160 1170 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG ::::::::::::::.::::::::::.::::::::::::::::::::::::::.::::::: gi|149 VYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNG 1180 1190 1200 1210 1220 1230 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG :::::.::::::: .:::::::.:::.:: ::::::.::::::::::::::::::::::: gi|149 IVVATAEDFMQNFKNLVGYHNSITEENLP-LLGANEDLESQSALLENDEKDEEDMSLDSG 1240 1250 1260 1270 1280 1290 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS ::::.::: :: :::::. ::::: ::::. ::::.::::::::.:::::::: :: : gi|149 DEISQIEVCSNFHSEILTKETKGSRGTDQNMNIQIQLQSSLDVQKSLLEDKTYQIDSEER 1300 1310 1320 1330 1340 1350 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS : :: ::::::.:::::::.::.::. ..::.:::: ::::::::::::::::::::..: gi|149 ASIDLVCSEGENSNSAEQDSYSNFQVYHSQLNMSHQFSHFNVLTHQTFLGTPYALSSSQS 1360 1370 1380 1390 1400 1410 280 290 mKIAA1 QENENYFLSAYKNS-GTEKS--PLS ::.:::::::: .: ::: ::. gi|149 QESENYFLSAYTQSLDREKSSSPLNWGKSDSSRPYSKEK 1420 1430 1440 1450 >>gi|73985236|ref|XP_858115.1| PREDICTED: similar to ret (1614 aa) initn: 1548 init1: 820 opt: 1556 Z-score: 1857.0 bits: 354.0 E(): 1e-94 Smith-Waterman score: 1556; 83.276% identity (92.833% similar) in 293 aa overlap (1-292:1309-1600) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::.:::::::::::::.:.:::::::::: gi|739 SILNPELITIENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLN 1280 1290 1300 1310 1320 1330 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG ::::::::::::::.::::::::::.::::::::::::::::::::::::::.::::::: gi|739 VYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNG 1340 1350 1360 1370 1380 1390 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG ::::::::::::: .:::::::.:::.:: :::::::::::::::::::::::::::::: gi|739 IVVATTEDFMQNFKNLVGYHNSITEENLP-LLGANENLESQSALLENDEKDEEDMSLDSG 1400 1410 1420 1430 1440 1450 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS ::::.::: :: :::::: ::::: ::::.:::::::::: :::::::::::: :: : gi|739 DEISQIEVCSNFHSEILAKETKGSRGTDQNKNIQIELQSSPDVQNSLLEDKTYQIDSEER 1460 1470 1480 1490 1500 1510 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS : . .:::::.:...:::.::.::. ..::.:::: ::::::::::::::::::::.. gi|739 ASVAIACSEGENSSATEQDSYSNFQVYHSQLNMSHQFSHFNVLTHQTFLGTPYALSSSQP 1520 1530 1540 1550 1560 1570 280 290 mKIAA1 QENENYFLSAYKNS-GTEKSPLS ::.:::::::: .: .::::: gi|739 QESENYFLSAYTQSLDRDKSPLSWGKSDSSRPFSKEK 1580 1590 1600 1610 >>gi|73985238|ref|XP_849196.1| PREDICTED: similar to ret (1634 aa) initn: 1548 init1: 820 opt: 1556 Z-score: 1856.9 bits: 354.0 E(): 1e-94 Smith-Waterman score: 1556; 83.276% identity (92.833% similar) in 293 aa overlap (1-292:1329-1620) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::.:::::::::::::.:.:::::::::: gi|739 SILNPELITIENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLN 1300 1310 1320 1330 1340 1350 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG ::::::::::::::.::::::::::.::::::::::::::::::::::::::.::::::: gi|739 VYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNG 1360 1370 1380 1390 1400 1410 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG ::::::::::::: .:::::::.:::.:: :::::::::::::::::::::::::::::: gi|739 IVVATTEDFMQNFKNLVGYHNSITEENLP-LLGANENLESQSALLENDEKDEEDMSLDSG 1420 1430 1440 1450 1460 1470 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS ::::.::: :: :::::: ::::: ::::.:::::::::: :::::::::::: :: : gi|739 DEISQIEVCSNFHSEILAKETKGSRGTDQNKNIQIELQSSPDVQNSLLEDKTYQIDSEER 1480 1490 1500 1510 1520 1530 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS : . .:::::.:...:::.::.::. ..::.:::: ::::::::::::::::::::.. gi|739 ASVAIACSEGENSSATEQDSYSNFQVYHSQLNMSHQFSHFNVLTHQTFLGTPYALSSSQP 1540 1550 1560 1570 1580 1590 280 290 mKIAA1 QENENYFLSAYKNS-GTEKSPLS ::.:::::::: .: .::::: gi|739 QESENYFLSAYTQSLDRDKSPLSWGKSDSSRPFSKEK 1600 1610 1620 1630 >>gi|119585723|gb|EAW65319.1| chromosome 3 open reading (1213 aa) initn: 1101 init1: 740 opt: 1554 Z-score: 1856.4 bits: 353.5 E(): 1.1e-94 Smith-Waterman score: 1554; 84.192% identity (92.096% similar) in 291 aa overlap (1-290:907-1195) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::.:::::::::::::.:.:::::::::: gi|119 SILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLN 880 890 900 910 920 930 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG ::::::::::::::.::::::::::.::::::::::::::::::::::::::.::::::: gi|119 VYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNG 940 950 960 970 980 990 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG :::::.::::::: .:::::::.:::.:: : :::::::::::::::::::::::::::: gi|119 IVVATAEDFMQNFKNLVGYHNSITEENLPQL-GANENLESQSALLENDEKDEEDMSLDSG 1000 1010 1020 1030 1040 1050 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS :::::::: :: :::: ::::: ::::::: ::::::: ::::::::::::: : : gi|119 DEISHIEVCSNFHSEIWEKETKGSRGTDQKKNTQIELQSSPDVQNSLLEDKTYL-DSEER 1060 1070 1080 1090 1100 1110 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS . :: ::::::.:::.:::.::.::. ..::.:::: ::::::::::::::::::::..: gi|119 TSIDIVCSEGENSNSTEQDSYSNFQVYHSQLNMSHQFSHFNVLTHQTFLGTPYALSSSQS 1120 1130 1140 1150 1160 1170 280 290 mKIAA1 QENENYFLSAYKNS-GTEKSPLS ::::::::::: .: .::: gi|119 QENENYFLSAYTESLDRDKSPPPLSWGKSDSSRPYSQEK 1180 1190 1200 1210 >>gi|163838629|ref|NP_056039.2| retinoblastoma-associate (1233 aa) initn: 1101 init1: 740 opt: 1554 Z-score: 1856.3 bits: 353.5 E(): 1.1e-94 Smith-Waterman score: 1554; 84.192% identity (92.096% similar) in 291 aa overlap (1-290:927-1215) 10 20 30 mKIAA1 QWKIHCKFQKKLKELGRMNTKALSLLTLLN :::.:::::::::::::.:.:::::::::: gi|163 SILNPEVVTVENLKNFLTFLEELSTPEGKWQWKVHCKFQKKLKELGRLNAKALSLLTLLN 900 910 920 930 940 950 40 50 60 70 80 90 mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEMDCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDNG ::::::::::::::.::::::::::.::::::::::::::::::::::::::.::::::: gi|163 VYQKKHLVEILSYHNCDSQTRNAPELDCLIRLQAQNIQQRHIVFLTEKNIKMLSSYTDNG 960 970 980 990 1000 1010 100 110 120 130 140 150 mKIAA1 IVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDSG :::::.::::::: .:::::::.:::.:: : :::::::::::::::::::::::::::: gi|163 IVVATAEDFMQNFKNLVGYHNSITEENLPQL-GANENLESQSALLENDEKDEEDMSLDSG 1020 1030 1040 1050 1060 1070 160 170 180 190 200 210 mKIAA1 DEISHIEVFSNVHSEILAGETKGSSGTDQKKNIQIELQSSLDVQNSLLEDKTYLIDCEAS :::::::: :: :::: ::::: ::::::: ::::::: ::::::::::::: : : gi|163 DEISHIEVCSNFHSEIWEKETKGSRGTDQKKNTQIELQSSPDVQNSLLEDKTYL-DSEER 1080 1090 1100 1110 1120 1130 220 230 240 250 260 270 mKIAA1 APIDRVCSEGESSNSAEQDAYSDFQADQNQLQMSHQCSHFNVLTHQTFLGTPYALSSTRS . :: ::::::.:::.:::.::.::. ..::.:::: ::::::::::::::::::::..: gi|163 TSIDIVCSEGENSNSTEQDSYSNFQVYHSQLNMSHQFSHFNVLTHQTFLGTPYALSSSQS 1140 1150 1160 1170 1180 1190 280 290 mKIAA1 QENENYFLSAYKNS-GTEKSPLS ::::::::::: .: .::: gi|163 QENENYFLSAYTESLDRDKSPPPLSWGKSDSSRPYSQEK 1200 1210 1220 1230 292 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Thu Mar 12 17:25:31 2009 done: Thu Mar 12 17:31:08 2009 Total Scan time: 782.700 Total Display time: 0.110 Function used was FASTA [version 34.26.5 April 26, 2007]