FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1805.ptfa, 591 aa vs ./tmplib.26680 library 1768426 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 7.2297+/-0.00608; mu= 5.7921+/- 0.405 mean_var=225.7442+/-54.341, 0's: 0 Z-trim: 6 B-trim: 0 in 0/36 Lambda= 0.0854 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1196 ( 883 res) mpm09049 ( 883) 1277 170 6e-43 >>mKIAA1196 ( 883 res) mpm09049 (883 aa) initn: 1029 init1: 582 opt: 1277 Z-score: 863.4 bits: 170.3 E(): 6e-43 Smith-Waterman score: 1291; 38.143% identity (41.441% ungapped) in 603 aa overlap (11-570:285-882) 10 20 30 40 mKIAA1 PHPGEARRAEVALVCPEPLGEIVRRGGGVMSSRLGAVTAT : :. : :... . . : :: :.. mKIAA1 VPVTKPIPITKPVPLTKHMPVTKLVTVSKPVPLTKPVPVSRPIVVSKPVPVSRPIAISRH 260 270 280 290 300 310 50 60 70 80 90 mKIAA1 PGPTSL-----KQQRSTRIVGAKNN--RAQCSIKDNSF--QYTIPHEDSLSGSSSASSCE : .. ..... : .: ..: :: :. . . . :.. . . :: .: mKIAA1 IPPCKMVLLSKSENKTLRATGKNSNKKRAADSLDTCPILSKQARPENGAYGPSSMDQSVT 320 330 340 350 360 370 100 110 120 130 140 mKIAA1 -PVSDFTATLRKSTYWMKMRRIKPAATSQVEGAGEKEKERAKGKRNVKQEEDED------ :.: . : .: : :. :: : :. :.: : : : .. mKIAA1 FPLSTDPSGSRPLMGKEALRPIGPV--SQPEEDPERTKHRRKQKTPKKFTGEQPSISGTF 380 390 400 410 420 430 150 160 170 180 190 mKIAA1 -YRELPQKKHKLYGRKQRPKAQPHPKPQARR---------VRKEPPVYAA----GSMEEK . : . . : .: .: : : . : : :: :. .: :. ::. mKIAA1 GLKGLAKAEDK--ARVHRSKKQEGSGSEEVRKKVLATPVTVSKEAPTPVAHPAPGGPEEQ 440 450 460 470 480 490 200 210 220 230 240 mKIAA1 WYLEIMDKGSVSCPTCQAVGRKTIEGLKKHMENCK--QEMFTCHHCGKQLHSLAGMKYHV : : ..: . ::::..: :::. ::::::: :. :: . :.:: ::..: ::..::. mKIAA1 WQRAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCHKLQEALKCQHCRKQFKSKAGLNYHT 500 510 520 530 540 550 250 260 270 280 290 300 mKIAA1 MANHNSLPILKAGDEVDEPSERERLRTVLKRMGKLRCMRESCSSTFTSIMGYLYHVRKCG ::.:.. : ..: : :::::: :::.::.::: .:.:...:.:.::: :: :.:: mKIAA1 MAEHSAKPTDAEASEGGEQEERERLRKVLKQMGRLRCPQEGCGAAFSSLMGYQYHQRRCG 560 570 580 590 600 610 310 320 330 340 350 360 mKIAA1 KEASELEKLALKCHHCGKPYRSKAGLAYHMRSEHG--PVFFPESEQPDCLKEMSLEAKGG : :... .. : :::: :::::: ::.:::: : : .. :. ...: . mKIAA1 KPPCEVDSPSFPCTHCGKTYRSKAGHDYHVRSEHTAPPPEDPTDKIPEAEDLLGVERTPS 620 630 640 650 660 670 370 380 390 400 410 420 mKIAA1 GRVQRRSAKIAVYHLQELASAELTKEWPKRKVLQDLVPDDRKLKYTRPGLPTFSQEVLHK ::..: ::..::.::::.: ::...: ::.. .::::. .:.::::::::.. ..:. mKIAA1 GRIRRTSAQVAVFHLQEIAEDELARDWTKRRMKDDLVPETARLNYTRPGLPTLNPQLLEA 680 690 700 710 720 730 430 440 450 460 470 480 mKIAA1 WKTDIKKYHRIQCPNQGCEAVYSSVSGLKAHLGSCTLGTFVAGKYKCLLCEKEFVSESGV ::...:. ...:::. :::.:.:::::::::.::. : ..:::.:::: ::: ::::: mKIAA1 WKNEVKEKGHVNCPNDCCEAIYASVSGLKAHLASCSKGDHLVGKYRCLLCPKEFSSESGV 740 750 760 770 780 790 490 500 510 520 530 540 mKIAA1 KYHINSVHAEDWF--VVNPTTT-KSFEKLMKIKQRQQEEEKQRQQHGRRRSLRRQQQPCM :::: ..:.:.:: ..:.. :: ..:: :.... ... ::. . : ...: mKIAA1 KYHILKTHGENWFRTSADPSSKHKSQDSLMPRKEKKKSLSGGKKR-GRKPKERSSEEPAS 800 810 820 830 840 550 560 570 580 590 mKIAA1 E-PPESQLEPKAGKEQG-----GNEELVGPDPEPVPAQPQKAEPAKTTHKRGRK . ::. . : .:...: :.. .: :: mKIAA1 KLPPNRDDWPPGGRDRGSRSSTGKKAGAGKAPEK 850 860 870 880 591 residues in 1 query sequences 1768426 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:53:36 2006 done: Mon Mar 27 10:53:36 2006 Scan time: 0.780 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]