# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mej00722.fasta.nr -Q ../query/mKIAA1452.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1452, 715 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7920995 sequences Expectation_n fit: rho(ln(x))= 5.3920+/-0.000184; mu= 12.2315+/- 0.010 mean_var=75.9501+/-14.783, 0's: 32 Z-trim: 33 B-trim: 72 in 1/65 Lambda= 0.147167 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|29427993|sp|Q9CZT4.2|RPC5_MOUSE RecName: Full=D ( 710) 4719 1011.6 0 gi|74198301|dbj|BAE35318.1| unnamed protein produc ( 710) 4715 1010.7 0 gi|74226782|dbj|BAE27037.1| unnamed protein produc ( 710) 4714 1010.5 0 gi|12848773|dbj|BAB28084.1| unnamed protein produc ( 710) 4710 1009.7 0 gi|149068046|gb|EDM17598.1| polymerase (RNA) III ( ( 708) 4625 991.6 0 gi|149758536|ref|XP_001494107.1| PREDICTED: simila ( 711) 4398 943.4 0 gi|29428028|sp|Q9NVU0.1|RPC5_HUMAN RecName: Full=D ( 708) 4362 935.8 0 gi|12836675|dbj|BAB23761.1| unnamed protein produc ( 684) 4360 935.4 0 gi|148685286|gb|EDL17233.1| polymerase (RNA) III ( ( 689) 4360 935.4 0 gi|24429619|gb|AAM18215.1| RNA polymerase III 80 k ( 708) 4358 934.9 0 gi|62897137|dbj|BAD96509.1| polymerase (RNA) III ( ( 708) 4356 934.5 0 gi|119570992|gb|EAW50607.1| polymerase (RNA) III ( ( 709) 4318 926.5 0 gi|114661526|ref|XP_511201.2| PREDICTED: hypotheti ( 793) 4246 911.2 0 gi|149758540|ref|XP_001494155.1| PREDICTED: simila ( 675) 4167 894.4 0 gi|126334136|ref|XP_001366919.1| PREDICTED: simila ( 709) 4144 889.5 0 gi|10435073|dbj|BAB14481.1| unnamed protein produc ( 672) 4131 886.7 0 gi|194384452|dbj|BAG59386.1| unnamed protein produ ( 672) 4052 870.0 0 gi|109127866|ref|XP_001086444.1| PREDICTED: polyme ( 913) 4036 866.7 0 gi|149758538|ref|XP_001494127.1| PREDICTED: simila ( 669) 4010 861.0 0 gi|194374587|dbj|BAG62408.1| unnamed protein produ ( 687) 3975 853.6 0 gi|12653043|gb|AAH00285.1| POLR3E protein [Homo sa ( 666) 3974 853.4 0 gi|10434958|dbj|BAB14437.1| unnamed protein produc ( 666) 3963 851.1 0 gi|148685287|gb|EDL17234.1| polymerase (RNA) III ( ( 612) 3933 844.7 0 gi|194373451|dbj|BAG56821.1| unnamed protein produ ( 652) 3900 837.7 0 gi|119570991|gb|EAW50606.1| polymerase (RNA) III ( ( 654) 3790 814.3 0 gi|73958771|ref|XP_850881.1| PREDICTED: similar to ( 880) 3223 694.0 5.9e-197 gi|149636800|ref|XP_001507137.1| PREDICTED: simila ( 701) 3059 659.1 1.5e-186 gi|224070529|ref|XP_002197522.1| PREDICTED: simila ( 700) 2785 601.0 4.9e-169 gi|47937486|gb|AAH72054.1| MGC78924 protein [Xenop ( 701) 2591 559.8 1.2e-156 gi|89271928|emb|CAJ83703.1| novel protein similar ( 697) 2585 558.5 2.9e-156 gi|51703365|gb|AAH80898.1| Polr3e protein [Xenopus ( 547) 2438 527.2 6e-147 gi|29124510|gb|AAH48877.1| Polymerase (RNA) III (D ( 696) 2408 520.9 6e-145 gi|194678592|ref|XP_001787772.1| PREDICTED: simila ( 800) 2126 461.1 7.1e-127 gi|118098048|ref|XP_414921.2| PREDICTED: similar t ( 318) 1701 370.6 5e-100 gi|210127244|gb|EEA74927.1| hypothetical protein B ( 697) 1679 366.1 2.4e-98 gi|210112313|gb|EEA60091.1| hypothetical protein B ( 697) 1672 364.7 6.6e-98 gi|84579167|dbj|BAE73017.1| hypothetical protein [ ( 269) 1537 335.7 1.3e-89 gi|115686183|ref|XP_781588.2| PREDICTED: similar t ( 996) 1389 304.7 1.1e-79 gi|110762464|ref|XP_397129.3| PREDICTED: similar t ( 499) 1228 270.3 1.2e-69 gi|198428136|ref|XP_002129398.1| PREDICTED: simila ( 659) 1198 264.0 1.3e-67 gi|156553488|ref|XP_001600399.1| PREDICTED: simila ( 510) 1122 247.8 7.4e-63 gi|47206568|emb|CAF91799.1| unnamed protein produc ( 750) 1087 240.5 1.7e-60 gi|167866165|gb|EDS29548.1| DNA-directed RNA polym ( 462) 1066 235.9 2.6e-59 gi|167864598|gb|EDS27981.1| DNA-directed RNA polym ( 462) 1062 235.0 4.7e-59 gi|108871965|gb|EAT36190.1| conserved hypothetical ( 461) 1034 229.1 2.9e-57 gi|91089167|ref|XP_974028.1| PREDICTED: similar to ( 492) 904 201.5 6.1e-49 gi|157015829|gb|EAA11915.3| AGAP005922-PA [Anophel ( 474) 901 200.9 9.3e-49 gi|198149710|gb|EAL30713.2| GA10413 [Drosophila ps ( 476) 889 198.3 5.4e-48 gi|115620425|ref|XP_786567.2| PREDICTED: hypotheti ( 288) 844 188.6 2.7e-45 gi|215496694|gb|EEC06334.1| DNA-directed RNA polym ( 495) 738 166.3 2.5e-38 >>gi|29427993|sp|Q9CZT4.2|RPC5_MOUSE RecName: Full=DNA-d (710 aa) initn: 4719 init1: 4719 opt: 4719 Z-score: 5410.2 bits: 1011.6 E(): 0 Smith-Waterman score: 4719; 100.000% identity (100.000% similar) in 710 aa overlap (6-715:1-710) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 MANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 600 610 620 630 640 650 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS 660 670 680 690 700 710 >>gi|74198301|dbj|BAE35318.1| unnamed protein product [M (710 aa) initn: 4715 init1: 4715 opt: 4715 Z-score: 5405.6 bits: 1010.7 E(): 0 Smith-Waterman score: 4715; 99.859% identity (100.000% similar) in 710 aa overlap (6-715:1-710) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 MANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV ::::::::::::::::::::::.::::::::::::::::::::::::::::::::::::: gi|741 AALYRQGELHLTPLHGILQLRPNFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 600 610 620 630 640 650 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS 660 670 680 690 700 710 >>gi|74226782|dbj|BAE27037.1| unnamed protein product [M (710 aa) initn: 4714 init1: 4714 opt: 4714 Z-score: 5404.4 bits: 1010.5 E(): 0 Smith-Waterman score: 4714; 99.859% identity (100.000% similar) in 710 aa overlap (6-715:1-710) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 MANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 600 610 620 630 640 650 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|742 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS 660 670 680 690 700 710 >>gi|12848773|dbj|BAB28084.1| unnamed protein product [M (710 aa) initn: 4710 init1: 4710 opt: 4710 Z-score: 5399.9 bits: 1009.7 E(): 0 Smith-Waterman score: 4710; 99.718% identity (100.000% similar) in 710 aa overlap (6-715:1-710) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 MANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 TEFVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 600 610 620 630 640 650 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS :::::::::::::::::::.::::::::::::::::::::::::::::::::::: gi|128 LEIFSKNYRVRRNLIQSRLAQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS 660 670 680 690 700 710 >>gi|149068046|gb|EDM17598.1| polymerase (RNA) III (DNA (708 aa) initn: 2988 init1: 2988 opt: 4625 Z-score: 5302.3 bits: 991.6 E(): 0 Smith-Waterman score: 4625; 98.028% identity (99.155% similar) in 710 aa overlap (6-715:1-708) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 MANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA ::::::::::::::::::::::::::::::.::::::::::::::::::::::::::::: gi|149 VELEMAIDTLNPNYCRSKGEQIALNVDGACTDETSTYSSKLMDKQTFCSSQTTSNTARYA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|149 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINRGWEFLLPYDLEFIKKHPDV 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL :::::::::::::::::::::::::::::::: :::: ::::::::::::::::::::: gi|149 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGPSAPV--VSGEQRVQTAKTKAQQNHAFL 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG ::::::::::.:..:::::::::::::::::::: :::::::::::::::.::::::::: gi|149 ERELQRRKEQIRGTTVLPSVQIKEEPLSEEEADGDELEAEEEEPMDTAPSSCLSTKLANG 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP ::::::::::::::::.::::::::: ::::::::::::::::::::::::::::::::: gi|149 LPAGRAVGGDSLNGHPIPGCASNPVARELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL ::: :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PGHTLFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 600 610 620 630 640 650 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS :::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|149 LEIFSKNYRVRRNMIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS 660 670 680 690 700 >>gi|149758536|ref|XP_001494107.1| PREDICTED: similar to (711 aa) initn: 3219 init1: 3219 opt: 4398 Z-score: 5041.8 bits: 943.4 E(): 0 Smith-Waterman score: 4398; 92.686% identity (97.468% similar) in 711 aa overlap (6-715:1-711) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK :::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|149 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|149 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::.:::::::::::::::::::::: gi|149 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCQGSSGVEN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::: :.:::::::::::::::::::::::::::.::::::::::: gi|149 TELVKSPSEYLMMLMPPSQEQEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFA 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::: .::::::::::::::::::::::::::::::::::::::.::::::::::: gi|149 NLMSLLGPFIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDF 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::.:::: ::::::::::::::::::::::.:::: ::::::::: gi|149 VMWKFTQSRWVVRKEVATVTKLSAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDV 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL ::::::::.:::::::::::::::::::::::::.:. ::::.::::.::.:::::::.: gi|149 VQRQHMLWTGIQAKLEKVYNLVKETMPKKPDGQSGPAVLVSGDQRVQVAKSKAQQNHALL 420 430 440 450 460 470 490 500 510 520 530 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEE-EEPMDTAPSTCLSTKLAN ::::::::::.::.::::.:.:::::.::: . : :.:: ::::::.:: : ..::: gi|149 ERELQRRKEQIRASTVLPGVRIKEEPMSEEGEEEEEREVEEDEEPMDTSPSRGLHNRLAN 480 490 500 510 520 530 540 550 560 570 580 590 mKIAA1 GLPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGL :::::::.::::.:::: :::::.::: ::.:::::::::::::::::::::::::::.: gi|149 GLPAGRAAGGDSFNGHPPPGCASTPVARELRAFVEATFQRQFVLTLSELKRLFNLHLASL 540 550 560 570 580 590 600 610 620 630 640 650 mKIAA1 PPGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQV :::: ::::.:::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 PPGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQV 600 610 620 630 640 650 660 670 680 690 700 710 mKIAA1 LLEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS ::::::::::::::.:::::::::::.:::::::::::::::: :::::::::::: gi|149 LLEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS 660 670 680 690 700 710 >>gi|29428028|sp|Q9NVU0.1|RPC5_HUMAN RecName: Full=DNA-d (708 aa) initn: 3217 init1: 3217 opt: 4362 Z-score: 5000.6 bits: 935.8 E(): 0 Smith-Waterman score: 4362; 92.254% identity (96.901% similar) in 710 aa overlap (6-715:1-708) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK :::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|294 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|294 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|294 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITV 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::.:::::::::::::: ::::::: gi|294 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVEN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::: :::::::::::::::::::::::::::::.::::::::::: gi|294 TELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFA 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::.::::::::::::::::::::::::::::::::::::::.::::::::::: gi|294 NLMSLLGPSIDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDF 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::.:::::::::::::::::::::::::::.:::: ::::::::: gi|294 VMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDV 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL ::::::::.::::::::::::::::::::::.::.:.::: :.::.:.::::::::::.: gi|294 VQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALL 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG ::::::::::.:. .: :.:.:::::.::: . : ::::: ::::.:: : .::::: gi|294 ERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEE-PMDTSPSG-LHSKLANG 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP :: :::.: ::.:::: ::::.::: ::::::::::::::::::::::::::::::.:: gi|294 LPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLP 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL ::: ::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|294 PGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 600 610 620 630 640 650 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS :::::::::::::.:::::::::::.:::::::::::::::: :::::::::::: gi|294 LEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS 660 670 680 690 700 >>gi|12836675|dbj|BAB23761.1| unnamed protein product [M (684 aa) initn: 4360 init1: 4360 opt: 4360 Z-score: 4998.5 bits: 935.4 E(): 0 Smith-Waterman score: 4478; 96.338% identity (96.338% similar) in 710 aa overlap (6-715:1-684) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK ::::::::::::::::::::::::::::: gi|128 MANEEDDPVIQEIDVYLAKSLAEKLYLFQ-------------------------- 10 20 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA 30 40 50 60 70 80 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV 90 100 110 120 130 140 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN 150 160 170 180 190 200 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA 210 220 230 240 250 260 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF 270 280 290 300 310 320 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV 330 340 350 360 370 380 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL 390 400 410 420 430 440 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG 450 460 470 480 490 500 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP 510 520 530 540 550 560 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 570 580 590 600 610 620 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|128 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS 630 640 650 660 670 680 >>gi|148685286|gb|EDL17233.1| polymerase (RNA) III (DNA (689 aa) initn: 4360 init1: 4360 opt: 4360 Z-score: 4998.4 bits: 935.4 E(): 0 Smith-Waterman score: 4514; 96.364% identity (96.364% similar) in 715 aa overlap (1-715:1-689) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK :::::::::::::::::::::::::::::::::: gi|148 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQ-------------------------- 10 20 30 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF 280 290 300 310 320 330 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV 340 350 360 370 380 390 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL 400 410 420 430 440 450 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG 460 470 480 490 500 510 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP 520 530 540 550 560 570 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 580 590 600 610 620 630 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS ::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS 640 650 660 670 680 >>gi|24429619|gb|AAM18215.1| RNA polymerase III 80 kDa s (708 aa) initn: 3213 init1: 3213 opt: 4358 Z-score: 4996.0 bits: 934.9 E(): 0 Smith-Waterman score: 4358; 92.113% identity (96.901% similar) in 710 aa overlap (6-715:1-708) 10 20 30 40 50 60 mKIAA1 GGLPSMANEEDDPVIQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK :::::::::.::::::::::::::::::::::::::::::::::::::::::::: gi|244 MANEEDDPVVQEIDVYLAKSLAEKLYLFQYPVRPASMTYDDIPHLSAKIKPKQQK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTARYA ::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::: gi|244 VELEMAIDTLNPNYCRSKGEQIALNVDGACADETSTYSSKLMDKQTFCSSQTTSNTSRYA 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEEDVKQITV ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: gi|244 AALYRQGELHLTPLHGILQLRPSFSYLDKADAKHREREAANEAGDSSQDEAEDDVKQITV 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGMRDSRSEHERQYLLCQGSSGVEN :::::::::::::::::::::::::::::::::::::.:::::::::::::: ::::::: gi|244 RFSRPESEQARQRRVQSYEFLQKKHAEEPWVHLHYYGLRDSRSEHERQYLLCPGSSGVEN 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 TELVKSPSEYLMMLMPPSPEEEKDKPVAPSNVLSMAQLRTLPLADQIKVLMKNVKVMPFA :::::::::::::::::: :::::::::::::::::::::::::::::.::::::::::: gi|244 TELVKSPSEYLMMLMPPSQEEEKDKPVAPSNVLSMAQLRTLPLADQIKILMKNVKVMPFA 240 250 260 270 280 290 310 320 330 340 350 360 mKIAA1 NLMSLLGPSVDSVAVLRGIQKVAMLVQGNWVVKSDILYPKDSSSPHSGMPAEVLCRGRDF :::::::::.::::::::::.:::::::::::::::::::::::::::.::::::::::: gi|244 NLMSLLGPSIDSVAVLRGIQQVAMLVQGNWVVKSDILYPKDSSSPHSGVPAEVLCRGRDF 300 310 320 330 340 350 370 380 390 400 410 420 mKIAA1 VMWKFTQSRWVVRKEVAAVTKLCAEDVKDFLEHMAVVRINKGWEFLLPYDLEFIKKHPDV :::::::::::::::::.:::::::::::::::::::::::::::.:::: ::::::::: gi|244 VMWKFTQSRWVVRKEVATVTKLCAEDVKDFLEHMAVVRINKGWEFILPYDGEFIKKHPDV 360 370 380 390 400 410 430 440 450 460 470 480 mKIAA1 VQRQHMLWSGIQAKLEKVYNLVKETMPKKPDGQSAPVGLVSGEQRVQTAKTKAQQNHAFL ::::::::.::::::::::::::::::::::.::.:.::: :.::.:.::::::::::.: gi|244 VQRQHMLWTGIQAKLEKVYNLVKETMPKKPDAQSGPAGLVCGDQRIQVAKTKAQQNHALL 420 430 440 450 460 470 490 500 510 520 530 540 mKIAA1 ERELQRRKEQMRAATVLPSVQIKEEPLSEEEADGAELEAEEEEPMDTAPSTCLSTKLANG ::::::::::.:. .: :.:.:::::.::: . : ::::: ::::.:: : .::::: gi|244 ERELQRRKEQLRVPAVPPGVRIKEEPVSEEGEEDEEQEAEEE-PMDTSPSG-LHSKLANG 480 490 500 510 520 530 550 560 570 580 590 600 mKIAA1 LPAGRAVGGDSLNGHPVPGCASNPVACELKAFVEATFQRQFVLTLSELKRLFNLHLAGLP :: :::.: ::.:::: ::::.::: ::::::::::::::::::::::::::::::.:: gi|244 LPLGRAAGTDSFNGHPPQGCASTPVARELKAFVEATFQRQFVLTLSELKRLFNLHLASLP 540 550 560 570 580 590 610 620 630 640 650 660 mKIAA1 PGHILFSGVSDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL ::: ::::.::::::::::::::::::::::::::::::::::::::::::::::::::: gi|244 PGHTLFSGISDRMLQDTVLAAGCKQILVPFPPQTAASPDEQKVFALWESGDMSDQHRQVL 600 610 620 630 640 650 670 680 690 700 710 mKIAA1 LEIFSKNYRVRRNLIQSRLTQECGEELSKQEVDKVLKDCCVSCGGMWYLKGTVQS :::::::::::::.:::::::::::.:::::::::::::::: :::::::::::: gi|244 LEIFSKNYRVRRNMIQSRLTQECGEDLSKQEVDKVLKDCCVSYGGMWYLKGTVQS 660 670 680 690 700 715 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Sat Mar 14 08:12:14 2009 done: Sat Mar 14 08:20:16 2009 Total Scan time: 1061.240 Total Display time: 0.300 Function used was FASTA [version 34.26.5 April 26, 2007]