FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0141.ptfa, 525 aa vs ./tmplib.26680 library 1768492 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.3272+/-0.00498; mu= 14.4630+/- 0.334 mean_var=114.4144+/-26.082, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1199 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4137 ( 832 res) mbg17504 ( 832) 179 42 0.00024 mKIAA1325 ( 356 res) mbp03171 ( 356) 151 37 0.004 >>mKIAA4137 ( 832 res) mbg17504 (832 aa) initn: 219 init1: 150 opt: 179 Z-score: 170.3 bits: 41.8 E(): 0.00024 Smith-Waterman score: 228; 31.646% identity (32.895% ungapped) in 158 aa overlap (283-436:401-556) 260 270 280 290 300 310 mKIAA0 QQLFQLSVAITFNFLGTENIKTGDYTAAFSYFQKAADRGYSKAQYNVG-LCLEHGRGTPR :.: :..: .:: ..: : :. :::. . mKIAA4 GGSVVQRIRLPDEVENPGMNSGMLEEDLIQYYQFLAEKGDVQAQVGLGQLHLHGGRGVEQ 380 390 400 410 420 430 320 330 340 350 360 370 mKIAA0 DLSKAILFYHLAAVQGHSLAQYRYARCLLQSPGSLSDPER-ERAVSLLKQAADSGLTEAQ . ..:. ...::: :.: :. .. . : :: :. : :. .:.::: : .: mKIAA4 NHQRAFDYFNLAANAGNSHAMAFLGK--MYSEGSDIVPQSNETALHYFKKAADMGNPVGQ 440 450 460 470 480 380 390 400 410 420 mKIAA0 AFLGV--LFTKEPHLDEQRAVKYLWLAASNGDSQSRFHLGICYEKGLGAQRNLGEAVKCY . ::. :. . ... . :.::. :: .: .....:: : .:.:..:. .:.: . mKIAA4 SGLGMAYLYGRGVQVNYDLALKYFQKAAEQGWVDGQLQLGSMYYNGIGVKRDYKQALKYF 490 500 510 520 530 540 430 440 450 460 470 480 mKIAA0 QQAAAMGNEPARERLRTLFNVEAAGPSHLATTGLKSFSSPSLCSLNTLLAGASGLPHASS . :. :. mKIAA4 NLASQGGHILAFYNLAQMHASGTGVMRSCHTAVELFKNVCERGRWSERLMTAYNSYKDED 550 560 570 580 590 600 >>mKIAA1325 ( 356 res) mbp03171 (356 aa) initn: 115 init1: 115 opt: 151 Z-score: 148.4 bits: 36.5 E(): 0.004 Smith-Waterman score: 184; 25.701% identity (28.646% ungapped) in 214 aa overlap (245-443:52-258) 220 230 240 250 260 270 mKIAA0 ASRDFASQAKAAEAHPPGGKNEQDKAKALPLEEAVTSIQQLFQLSVAITFNFLGTENIKT .. :. ... .. . :... . : .. mKIAA1 PFSLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQFLKERIRRGDAMAYFLRGQLYFEE 30 40 50 60 70 80 280 290 300 310 320 330 mKIAA0 GDYTAAFSYFQKAADRGYSKAQYNVGLCLEHGRGTPRDLSKAILFYH--LAAVQGHSL-- : : :.. :.. .. . .: :..:. : :: . :.. ... : . ... mKIAA1 GWYEEALAQFEEIQEKDH-QAIYQLGVMYYDGLGTIANAEKGVNYMRKILDSSCPQTMHL 90 100 110 120 130 140 340 350 360 370 380 mKIAA0 ---AQYRYARCLLQSPG-SLSDPERERAVSLLKQAADSG----LTEAQAFLGVLFT-KEP : : .: ... : . :: : :: : :::.: ..::..::.... ::: mKIAA1 KFAAAYNLGRAYFEGKGVKRSDEEAER---LWLLAADNGNPKASVKAQSILGLFYSMKEP 150 160 170 180 190 390 400 410 420 430 mKIAA0 HLDEQRAVKYLWL--AASNGDSQSRFHLGICYEKGLGAQRNLGEAVKCYQQAAAMGNEPA . :. ..: : .::. .:. ::. : : : ... :..: ..:: :: : mKIAA1 KELEK---AFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAALHCLREAAERGNVYA 200 210 220 230 240 250 440 450 460 470 480 490 mKIAA0 RERLRTLFNVEAAGPSHLATTGLKSFSSPSLCSLNTLLAGASGLPHASSTGNLGLLCRSG . : mKIAA1 QGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEFIIKGMAMAAFYHGR 260 270 280 290 300 310 525 residues in 1 query sequences 1768492 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:13:01 2006 done: Mon Mar 27 10:13:02 2006 Scan time: 0.730 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]