# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/meh02733.fasta.nr -Q ../query/mKIAA0151.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA0151, 76 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7921447 sequences Expectation_n fit: rho(ln(x))= 5.0431+/-0.00018; mu= 4.2357+/- 0.010 mean_var=62.5163+/-12.323, 0's: 50 Z-trim: 50 B-trim: 2881 in 1/66 Lambda= 0.162210 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|22766829|gb|AAH37446.1| Ikbke protein [Mus musc ( 693) 490 122.5 5.6e-26 gi|148707765|gb|EDL39712.1| inhibitor of kappaB ki ( 707) 490 122.5 5.7e-26 gi|14548085|sp|Q9R0T8.1|IKKE_MOUSE RecName: Full=I ( 717) 490 122.5 5.8e-26 gi|74225536|dbj|BAE31675.1| unnamed protein produc ( 717) 490 122.5 5.8e-26 gi|26353608|dbj|BAC40434.1| unnamed protein produc ( 717) 490 122.5 5.8e-26 gi|148707764|gb|EDL39711.1| inhibitor of kappaB ki ( 759) 490 122.5 6.1e-26 gi|149058673|gb|EDM09830.1| inhibitor of kappaB ki ( 717) 454 114.1 2e-23 gi|109018620|ref|XP_001088015.1| PREDICTED: IKK-re ( 631) 320 82.7 4.9e-14 gi|109018618|ref|XP_001088252.1| PREDICTED: IKK-re ( 716) 320 82.7 5.5e-14 gi|119613954|gb|EAW93548.1| inhibitor of kappa lig ( 479) 301 78.1 8.6e-13 gi|78070490|gb|AAI07813.1| IKBKE protein [Homo sap ( 631) 301 78.2 1.1e-12 gi|76780279|gb|AAI05925.1| IKK-related kinase epsi ( 716) 301 78.3 1.2e-12 gi|14548079|sp|Q14164.1|IKKE_HUMAN RecName: Full=I ( 716) 301 78.3 1.2e-12 gi|33303999|gb|AAQ02507.1| inhibitor of kappa ligh ( 717) 301 78.3 1.2e-12 gi|194210240|ref|XP_001915500.1| PREDICTED: simila ( 718) 291 75.9 6.1e-12 gi|114572160|ref|XP_001146274.1| PREDICTED: IKK-re ( 752) 258 68.2 1.3e-09 gi|88954127|gb|AAI14123.1| Inhibitor of kappa ligh ( 718) 247 65.6 7.6e-09 gi|74006000|ref|XP_536108.2| PREDICTED: similar to ( 791) 241 64.2 2.2e-08 >>gi|22766829|gb|AAH37446.1| Ikbke protein [Mus musculus (693 aa) initn: 490 init1: 490 opt: 490 Z-score: 622.6 bits: 122.5 E(): 5.6e-26 Smith-Waterman score: 490; 98.592% identity (100.000% similar) in 71 aa overlap (6-76:623-693) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPD .::::::::::::::::::::::::::::: gi|227 VQRAQNHLHLIGHSVATCNSEARGAQESLNKIFDQLLLDRASEQGAEVSPQPMAPHPGPD 600 610 620 630 640 650 40 50 60 70 mKIAA0 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ::::::::::::::::::::::::::::::::::::::::: gi|227 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV 660 670 680 690 >>gi|148707765|gb|EDL39712.1| inhibitor of kappaB kinase (707 aa) initn: 490 init1: 490 opt: 490 Z-score: 622.5 bits: 122.5 E(): 5.7e-26 Smith-Waterman score: 490; 98.592% identity (100.000% similar) in 71 aa overlap (6-76:637-707) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPD .::::::::::::::::::::::::::::: gi|148 VQRAQNHLHLIGHSVATCNSEARGAQESLNKIFDQLLLDRASEQGAEVSPQPMAPHPGPD 610 620 630 640 650 660 40 50 60 70 mKIAA0 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ::::::::::::::::::::::::::::::::::::::::: gi|148 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV 670 680 690 700 >>gi|14548085|sp|Q9R0T8.1|IKKE_MOUSE RecName: Full=Inhib (717 aa) initn: 490 init1: 490 opt: 490 Z-score: 622.4 bits: 122.5 E(): 5.8e-26 Smith-Waterman score: 490; 98.592% identity (100.000% similar) in 71 aa overlap (6-76:647-717) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPD .::::::::::::::::::::::::::::: gi|145 VQRAQNHLHLIGHSVATCNSEARGAQESLNKIFDQLLLDRASEQGAEVSPQPMAPHPGPD 620 630 640 650 660 670 40 50 60 70 mKIAA0 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ::::::::::::::::::::::::::::::::::::::::: gi|145 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV 680 690 700 710 >>gi|74225536|dbj|BAE31675.1| unnamed protein product [M (717 aa) initn: 490 init1: 490 opt: 490 Z-score: 622.4 bits: 122.5 E(): 5.8e-26 Smith-Waterman score: 490; 98.592% identity (100.000% similar) in 71 aa overlap (6-76:647-717) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPD .::::::::::::::::::::::::::::: gi|742 VQRAQNHLHLIGHSVATCNSEARGAQESLNKIFDQLLLDRASEQGAEVSPQPMAPHPGPD 620 630 640 650 660 670 40 50 60 70 mKIAA0 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ::::::::::::::::::::::::::::::::::::::::: gi|742 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV 680 690 700 710 >>gi|26353608|dbj|BAC40434.1| unnamed protein product [M (717 aa) initn: 490 init1: 490 opt: 490 Z-score: 622.4 bits: 122.5 E(): 5.8e-26 Smith-Waterman score: 490; 98.592% identity (100.000% similar) in 71 aa overlap (6-76:647-717) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPD .::::::::::::::::::::::::::::: gi|263 VQRAQNHLHLIGHSVATCNSEARGAQESLNKIFDQLLLDRASEQGAEVSPQPMAPHPGPD 620 630 640 650 660 670 40 50 60 70 mKIAA0 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ::::::::::::::::::::::::::::::::::::::::: gi|263 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV 680 690 700 710 >>gi|148707764|gb|EDL39711.1| inhibitor of kappaB kinase (759 aa) initn: 490 init1: 490 opt: 490 Z-score: 622.1 bits: 122.5 E(): 6.1e-26 Smith-Waterman score: 490; 98.592% identity (100.000% similar) in 71 aa overlap (6-76:689-759) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPD .::::::::::::::::::::::::::::: gi|148 VQRAQNHLHLIGHSVATCNSEARGAQESLNKIFDQLLLDRASEQGAEVSPQPMAPHPGPD 660 670 680 690 700 710 40 50 60 70 mKIAA0 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ::::::::::::::::::::::::::::::::::::::::: gi|148 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV 720 730 740 750 >>gi|149058673|gb|EDM09830.1| inhibitor of kappaB kinase (717 aa) initn: 473 init1: 450 opt: 454 Z-score: 576.9 bits: 114.1 E(): 2e-23 Smith-Waterman score: 454; 90.141% identity (97.183% similar) in 71 aa overlap (6-76:647-717) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPD ..::::::::::.::::::::::: ::::: gi|149 VQKAQNHLHLIGHSVATCNSEARGAQESLAKMFDQLLLDRASKQGAEVSPQPMATHPGPD 620 630 640 650 660 670 40 50 60 70 mKIAA0 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV :::::::::::::::::::::::::::::::::::: .:.: gi|149 PKDLVFHMQELCNDMKLLAFDLQDNNRLIERLHRVPPTPEV 680 690 700 710 >>gi|109018620|ref|XP_001088015.1| PREDICTED: IKK-relate (631 aa) initn: 299 init1: 299 opt: 320 Z-score: 408.2 bits: 82.7 E(): 4.9e-14 Smith-Waterman score: 320; 70.149% identity (88.060% similar) in 67 aa overlap (10-76:567-631) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPDPKDL ::: ::: .::..:: :.::.:.: :::: gi|109 RLVSCSVAACNTEAQGVQESLSKILEELSHQLLQDRA--KGAQASPPPIAPYPSPTPKDL 540 550 560 570 580 590 40 50 60 70 mKIAA0 VFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ..::::::. ::::: :: ::::.::::.:::.:::: gi|109 LLHMQELCEGMKLLASDLLDNNRIIERLNRVPAAPDV 600 610 620 630 >>gi|109018618|ref|XP_001088252.1| PREDICTED: IKK-relate (716 aa) initn: 299 init1: 299 opt: 320 Z-score: 407.4 bits: 82.7 E(): 5.5e-14 Smith-Waterman score: 320; 70.149% identity (88.060% similar) in 67 aa overlap (10-76:652-716) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPDPKDL ::: ::: .::..:: :.::.:.: :::: gi|109 RLVSCSVAACNTEAQGVQESLSKILEELSHQLLQDRA--KGAQASPPPIAPYPSPTPKDL 630 640 650 660 670 40 50 60 70 mKIAA0 VFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ..::::::. ::::: :: ::::.::::.:::.:::: gi|109 LLHMQELCEGMKLLASDLLDNNRIIERLNRVPAAPDV 680 690 700 710 >>gi|119613954|gb|EAW93548.1| inhibitor of kappa light p (479 aa) initn: 280 init1: 280 opt: 301 Z-score: 386.0 bits: 78.1 E(): 8.6e-13 Smith-Waterman score: 301; 67.164% identity (85.075% similar) in 67 aa overlap (10-76:415-479) 10 20 30 mKIAA0 PMASLQIFDQLLLDRASEQGAEVSPQPMAPHPGPDPKDL ::: ::: .::..:: :.::.:.: ::: gi|119 RLVGCSVAACNTEAQGVQESLSKLLEELSHQLLQDRA--KGAQASPPPIAPYPSPTRKDL 390 400 410 420 430 440 40 50 60 70 mKIAA0 VFHMQELCNDMKLLAFDLQDNNRLIERLHRVPSAPDV ..::::::. ::::: :: ::::.::::.:::. ::: gi|119 LLHMQELCEGMKLLASDLLDNNRIIERLNRVPAPPDV 450 460 470 76 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 02:41:58 2009 done: Fri Mar 13 02:45:35 2009 Total Scan time: 468.270 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]