FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1554.ptfa, 876 aa
 vs ./tmplib.26680 library

1768141 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9669+/-0.00385; mu= 15.4829+/- 0.257
 mean_var=83.2721+/-19.195, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1405

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1404  ( 472 res)   mbj01136                   ( 472)  136   38  0.0039


>>mKIAA1404  ( 472 res)   mbj01136                        (472 aa)
 initn: 136 init1: 136 opt: 136  Z-score: 148.6  bits: 37.7 E(): 0.0039
Smith-Waterman score: 136;  52.941% identity (52.941% ungapped) in 34 aa overlap (179-212:403-436)

      150       160       170       180       190       200        
mKIAA1 LRNLAFYPVNMAVRSLLQGFVPRENKPGDLCPRGHPCSVGECGRPMQESTCLDCGLPVGG
                                     :: ::   . :::  ::.::: .:   .::
mKIAA1 TLPCSGLGISDEERVQIVTAMGVPRGHWFKCPNGHIYVITECGGAMQRSTCPECQEVIGG
            380       390       400       410       420       430  

      210       220       230       240       250       260        
mKIAA1 LNHTPHEGFSAIRNNEDRTQTGHVLGSPQSSGVAEVSDRGQSPVVFILTRLLTHLAMLVG
        :::                                                        
mKIAA1 ENHTLERSNHLASEMDGAQHPAWSNTANNFMNFEEIHRMM                    
            440       450       460       470                      




876 residues in 1 query   sequences
1768141 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:48:01 2006 done: Mon Mar 27 10:48:02 2006
 Scan time:  0.950 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]