FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0171.ptfa, 475 aa vs ./tmplib.26680 library 1768542 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.9399+/-0.00626; mu= 6.4162+/- 0.418 mean_var=190.9389+/-44.138, 0's: 0 Z-trim: 4 B-trim: 0 in 0/36 Lambda= 0.0928 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1065 ( 658 res) mfj03252 ( 658) 530 83 6.2e-17 >>mKIAA1065 ( 658 res) mfj03252 (658 aa) initn: 623 init1: 316 opt: 530 Z-score: 396.3 bits: 83.2 E(): 6.2e-17 Smith-Waterman score: 541; 29.099% identity (32.061% ungapped) in 433 aa overlap (35-443:30-446) 10 20 30 40 50 60 mKIAA0 FMCCSVLMLIFMYLYVCVCTCTCAFSLCSTNVVMNYSEIESKVREATNDDPWGPSGQLMG :.: :::: : ::::::..::::::..:: mKIAA1 GTGKFLLKGFTFVTKKIKMTTSSIRRQMKNIVNNYSEAEIKVREATSNDPWGPSSSLMT 10 20 30 40 50 70 80 90 100 110 120 mKIAA0 EIAKATFMYEQFPELMNMLWSRMLKDNKKNWRRVYKSLLLLAYLIRNGSERVVTSAREHI ::: :. : :.:.:.:.: :.:. ::::.:::.: :: :::..:::::. . ::.: mKIAA1 EIADLTYNVVAFSEIMSMVWKR-LNDHGKNWRHVYKALTLLDYLIKTGSERVAQQCRENI 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA0 YDLRSLENYHFVDEHGKDQGINIRQKVKELVEFAQDDDRLREERKKAKKNKDKYV----G . ...:......:. :::::::.:.: :.:: . .:..::. :: .: :.:.... : mKIAA1 FAIQTLKDFQYIDRDGKDQGINVREKSKQLVALLKDEERLKVERVQALKTKERMAQVATG 120 130 140 150 160 170 190 200 210 220 230 mKIAA0 VSSDSVGGFRYNERYDPEPKSKWDEEWDKNKSAFPFSDKLG-ELS----DKIGSTIDDT- :.:... : . . :. .....:. . .. : : . . : : . :. . .. mKIAA1 VGSNQITFGRGSSQ--PNLSTSYSEQEYGKAGGSPASYHGSPEASLCPQHRTGAMLGQSE 180 190 200 210 220 230 240 250 260 270 280 mKIAA0 ----ISK---------FRRKDREDSPERCSDSDEEKKARRGRSPKGEFKDEEETVTTKHI .:. . . : . : :. .: : . . . .: ... mKIAA1 ELQPLSQRHPCLPHLGLASHPNGDWAQPCLTCDRAARATSPRVSSELEQARPQTSGEEEL 240 250 260 270 280 290 290 300 310 320 330 340 mKIAA0 HITQATETTTTRHKRTANPSKTIDLGAAAHYTGDKASPDQNASTHTPQSSAKPSVPSSKS .. : . .. . :: .. . . . . .. ::. :... mKIAA1 QLQLALAMSREVAEQEERLRRGDDLRLQMALEESRRDTVKVPKKKEAKACCKPGSHSQQT 300 310 320 330 340 350 350 360 370 380 390 400 mKIAA0 SGDLVDLFDGSSQSAATSGNGDFGDWSAFNQA-PSGPVASGGELFGSAPQSAVELISASQ . :.::.:. .:. .. . . ::: .: ..: :: . ::.. :. mKIAA1 T--LLDLMDALPSSGPVTQKTE--PWSAGASANQTNPW--GGTV---APSN----ITDPW 360 370 380 390 400 410 420 430 440 450 460 mKIAA0 PALGPPPAASNSADLFDLMGSSQATMTSSQSMNFSLMSTNTVGLGLPMSRSQVSCLFPLG :..: :::: . .:.:.. .:. : . ....: mKIAA1 PSFGTKPAASVDPWGVPTTASTQSVPKNSDPWAASQQPASNAGKTTDAWGAAKPSSASGS 410 420 430 440 450 460 470 mKIAA0 IGAYTSTRRSNSMMS mKIAA1 FELFSNFNGTVKDDFSEFDNLRTSKKPAESGASVPPQDSRTTSPDLFESQSLTSASSKPS 470 480 490 500 510 520 475 residues in 1 query sequences 1768542 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:13:44 2006 done: Mon Mar 27 10:13:45 2006 Scan time: 0.700 Display time: 0.020 Function used was FASTA [version 3.4t11 Apr 17, 2002]