# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/meg02802.fasta.nr -Q ../query/mKIAA1165.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
mKIAA1165, 106 aa
vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library
2727779818 residues in 7921681 sequences
statistics sampled from 60000 to 7921370 sequences
Expectation_n fit: rho(ln(x))= 4.4987+/-0.000179; mu= 8.1080+/- 0.010
mean_var=58.6279+/-11.667, 0's: 43 Z-trim: 44 B-trim: 2963 in 1/66
Lambda= 0.167503
FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 36, opt: 24, open/ext: -10/-2, width: 16
The best scores are: opt bits E(7921681)
gi|47937415|gb|AAH71237.1| Nedd4 family interactin ( 241) 672 169.9 1.4e-40
gi|15705909|gb|AAL05872.1|AF411608_1 Nedd4 WW doma ( 241) 672 169.9 1.4e-40
gi|26347645|dbj|BAC37471.1| unnamed protein produc ( 241) 672 169.9 1.4e-40
gi|73921210|sp|Q91ZP6.2|NFIP2_MOUSE RecName: Full= ( 311) 672 170.0 1.7e-40
gi|77415520|gb|AAI06126.1| Ndfip2 protein [Mus mus ( 313) 672 170.0 1.7e-40
gi|74178214|dbj|BAE29893.1| unnamed protein produc ( 241) 667 168.7 3.2e-40
gi|149050156|gb|EDM02480.1| Nedd4 family interacti ( 242) 660 167.0 1.1e-39
gi|194386240|dbj|BAG59684.1| unnamed protein produ ( 195) 617 156.6 1.2e-36
gi|19913452|gb|AAH26126.1| NDFIP2 protein [Homo sa ( 242) 617 156.7 1.4e-36
gi|7023163|dbj|BAA91863.1| unnamed protein product ( 242) 617 156.7 1.4e-36
gi|55730833|emb|CAH92135.1| hypothetical protein [ ( 242) 617 156.7 1.4e-36
gi|55733619|emb|CAH93486.1| hypothetical protein [ ( 308) 617 156.7 1.7e-36
gi|73989388|ref|XP_534156.2| PREDICTED: similar to ( 321) 617 156.8 1.7e-36
gi|194221971|ref|XP_001916257.1| PREDICTED: simila ( 335) 617 156.8 1.8e-36
gi|109121025|ref|XP_001092556.1| PREDICTED: Nedd4 ( 336) 617 156.8 1.8e-36
gi|31455493|dbj|BAC77372.1| putative NFkB activati ( 336) 617 156.8 1.8e-36
gi|73921209|sp|Q9NV92.2|NFIP2_HUMAN RecName: Full= ( 336) 617 156.8 1.8e-36
gi|194040754|ref|XP_001926612.1| PREDICTED: simila ( 336) 616 156.5 2.1e-36
gi|114650197|ref|XP_522688.2| PREDICTED: similar t ( 502) 617 156.9 2.4e-36
gi|75948176|gb|AAI05184.1| NDFIP2 protein [Bos tau ( 302) 612 155.5 3.9e-36
gi|76631750|ref|XP_589802.2| PREDICTED: Nedd4 fami ( 336) 612 155.6 4.2e-36
gi|126337622|ref|XP_001367997.1| PREDICTED: hypoth ( 328) 591 150.5 1.4e-34
gi|60098697|emb|CAH65179.1| hypothetical protein [ ( 234) 580 147.7 6.8e-34
gi|37748613|gb|AAH60023.1| MGC68708 protein [Xenop ( 232) 569 145.0 4.2e-33
gi|50924806|gb|AAH79714.1| MGC82096 protein [Xenop ( 234) 569 145.0 4.3e-33
gi|37589075|gb|AAH59183.1| Zgc:63948 [Danio rerio] ( 235) 545 139.2 2.4e-31
gi|47217915|emb|CAG06521.1| unnamed protein produc ( 248) 535 136.8 1.3e-30
gi|148668188|gb|EDL00518.1| Nedd4 family interacti ( 153) 523 133.8 6.9e-30
gi|149050155|gb|EDM02479.1| Nedd4 family interacti ( 258) 512 131.3 6.4e-29
gi|209153974|gb|ACI33219.1| NEDD4 family-interacti ( 172) 475 122.2 2.3e-26
gi|224043514|ref|XP_002197601.1| PREDICTED: Nedd4 ( 253) 473 121.9 4.4e-26
gi|62859399|ref|NP_001016994.1| Nedd4 family inter ( 254) 468 120.7 1e-25
gi|149634932|ref|XP_001510381.1| PREDICTED: simila ( 273) 454 117.3 1.1e-24
gi|118097612|ref|XP_414658.2| PREDICTED: similar t ( 196) 447 115.5 2.8e-24
gi|73949480|ref|XP_535223.2| PREDICTED: similar to ( 307) 447 115.7 3.9e-24
gi|149726775|ref|XP_001502054.1| PREDICTED: simila ( 323) 447 115.7 4.1e-24
gi|209737230|gb|ACI69484.1| NEDD4 family-interacti ( 210) 444 114.8 4.9e-24
gi|55625026|ref|XP_518006.1| PREDICTED: similar to ( 211) 444 114.8 4.9e-24
gi|74733098|sp|Q9BT67.1|NFIP1_HUMAN RecName: Full= ( 221) 444 114.8 5.1e-24
gi|81883491|sp|Q5U2S1.1|NFIP1_RAT RecName: Full=NE ( 221) 444 114.8 5.1e-24
gi|114602454|ref|XP_001153016.1| PREDICTED: simila ( 240) 444 114.8 5.4e-24
gi|82183886|sp|Q6GLN5.1|NFIP1_XENLA RecName: Full= ( 212) 443 114.6 5.8e-24
gi|126291084|ref|XP_001378127.1| PREDICTED: simila ( 303) 444 114.9 6.4e-24
gi|82225743|sp|Q4V786.1|NFIP1_XENTR RecName: Full= ( 211) 442 114.3 6.9e-24
gi|197127713|gb|ACH44211.1| putative Nedd4 family ( 213) 442 114.3 6.9e-24
gi|224067345|ref|XP_002193431.1| PREDICTED: putati ( 213) 442 114.3 6.9e-24
gi|47219247|emb|CAG11709.1| unnamed protein produc ( 211) 441 114.1 8.1e-24
gi|27882287|gb|AAH44423.1| Nedd4 family interactin ( 211) 440 113.8 9.6e-24
gi|119226350|gb|AAI28975.1| Ndfip1 protein [Xenopu ( 211) 439 113.6 1.1e-23
gi|81878815|sp|Q8R0W6.1|NFIP1_MOUSE RecName: Full= ( 221) 439 113.6 1.2e-23
>>gi|47937415|gb|AAH71237.1| Nedd4 family interacting pr (241 aa)
initn: 672 init1: 672 opt: 672 Z-score: 884.8 bits: 169.9 E(): 1.4e-40
Smith-Waterman score: 672; 99.000% identity (99.000% similar) in 100 aa overlap (1-100:88-187)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::::::::::::::::::
gi|479 SITVEAPTTSDTDVYSEFYPVPPPYSVATSLPTYDEAEKAKAAALAAAAADAPQRNQEED
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|479 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
120 130 140 150 160 170
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|479 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
180 190 200 210 220 230
>>gi|15705909|gb|AAL05872.1|AF411608_1 Nedd4 WW domain-b (241 aa)
initn: 695 init1: 672 opt: 672 Z-score: 884.8 bits: 169.9 E(): 1.4e-40
Smith-Waterman score: 672; 99.000% identity (99.000% similar) in 100 aa overlap (1-100:88-187)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::::::::::::::::::
gi|157 SITVEAPTTSDTDVYSEFYPVPPPYSVATSLPTYDEAEKAKAAALAAAAADAPQRNQEED
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|157 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
120 130 140 150 160 170
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|157 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
180 190 200 210 220 230
>>gi|26347645|dbj|BAC37471.1| unnamed protein product [M (241 aa)
initn: 695 init1: 672 opt: 672 Z-score: 884.8 bits: 169.9 E(): 1.4e-40
Smith-Waterman score: 672; 99.000% identity (99.000% similar) in 100 aa overlap (1-100:88-187)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::::::::::::::::::
gi|263 SITVEAPTTSDTDVYSEFYPVPPPYSVATSLPTYDEAEKAKAAALAAAAADAPQRNQEED
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|263 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
120 130 140 150 160 170
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|263 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSEGMAAAHRTRY
180 190 200 210 220 230
>>gi|73921210|sp|Q91ZP6.2|NFIP2_MOUSE RecName: Full=NEDD (311 aa)
initn: 695 init1: 672 opt: 672 Z-score: 883.3 bits: 170.0 E(): 1.7e-40
Smith-Waterman score: 672; 99.000% identity (99.000% similar) in 100 aa overlap (1-100:158-257)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::::::::::::::::::
gi|739 SITVEAPTTSDTDVYSEFYPVPPPYSVATSLPTYDEAEKAKAAALAAAAADAPQRNQEED
130 140 150 160 170 180
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|739 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
190 200 210 220 230 240
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|739 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
250 260 270 280 290 300
>>gi|77415520|gb|AAI06126.1| Ndfip2 protein [Mus musculu (313 aa)
initn: 672 init1: 672 opt: 672 Z-score: 883.3 bits: 170.0 E(): 1.7e-40
Smith-Waterman score: 672; 99.000% identity (99.000% similar) in 100 aa overlap (1-100:160-259)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::::::::::::::::::
gi|774 SITVEAPTTSDTDVYSEFYPVPPPYSVATSLPTYDEAEKAKAAALAAAAADAPQRNQEED
130 140 150 160 170 180
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|774 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
190 200 210 220 230 240
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|774 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
250 260 270 280 290 300
>>gi|74178214|dbj|BAE29893.1| unnamed protein product [M (241 aa)
initn: 690 init1: 667 opt: 667 Z-score: 878.3 bits: 168.7 E(): 3.2e-40
Smith-Waterman score: 667; 98.000% identity (99.000% similar) in 100 aa overlap (1-100:88-187)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::::::::::::::::::
gi|741 SITVEAPTTSDTDVYSEFYPVPPPYSVATSLPTYDEAEKAKAAALAAAAADAPQRNQEED
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
gi|741 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNAIAGRYGAICGFGLSL
120 130 140 150 160 170
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|741 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
180 190 200 210 220 230
>>gi|149050156|gb|EDM02480.1| Nedd4 family interacting p (242 aa)
initn: 660 init1: 660 opt: 660 Z-score: 869.1 bits: 167.0 E(): 1.1e-39
Smith-Waterman score: 660; 97.000% identity (98.000% similar) in 100 aa overlap (1-100:89-188)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
:::::::::::::::::::::::::::::.
gi|149 SITVDGPTTSDADVYSEFYPVPPPYSVATSLPTYDEAEKAKAAALAAAAADAPQRNQEEE
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
: ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
gi|149 CPPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
120 130 140 150 160 170
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|149 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
180 190 200 210 220 230
>>gi|194386240|dbj|BAG59684.1| unnamed protein product [ (195 aa)
initn: 639 init1: 617 opt: 617 Z-score: 814.2 bits: 156.6 E(): 1.2e-36
Smith-Waterman score: 617; 90.000% identity (96.000% similar) in 100 aa overlap (1-100:42-141)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::.:::::.. :: :::.
gi|194 QVLLNEEDNSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEE
20 30 40 50 60 70
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
: :::::::..:::::::::::::::::::::::::::::::::::::::::::::::::
gi|194 CPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
80 90 100 110 120 130
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|194 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
140 150 160 170 180 190
>>gi|19913452|gb|AAH26126.1| NDFIP2 protein [Homo sapien (242 aa)
initn: 639 init1: 617 opt: 617 Z-score: 813.0 bits: 156.7 E(): 1.4e-36
Smith-Waterman score: 617; 90.000% identity (96.000% similar) in 100 aa overlap (1-100:89-188)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::.:::::.. :: :::.
gi|199 SITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEE
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
: :::::::..:::::::::::::::::::::::::::::::::::::::::::::::::
gi|199 CPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
120 130 140 150 160 170
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|199 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
180 190 200 210 220 230
>>gi|7023163|dbj|BAA91863.1| unnamed protein product [Ho (242 aa)
initn: 639 init1: 617 opt: 617 Z-score: 813.0 bits: 156.7 E(): 1.4e-36
Smith-Waterman score: 617; 90.000% identity (96.000% similar) in 100 aa overlap (1-100:89-188)
10 20 30
mKIAA1 LPTYDEAEKAKAAALAAAAADAPQRNQEED
::::::::::::::.:::::.. :: :::.
gi|702 SITVEVPTTSDTEVYGEFYPVPPPYSVATSLPTYDEAEKAKAAAMAAAAAETSQRIQEEE
60 70 80 90 100 110
40 50 60 70 80 90
mKIAA1 CTPRDDFSDVEQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
: :::::::..:::::::::::::::::::::::::::::::::::::::::::::::::
gi|702 CPPRDDFSDADQLRVGNDGIFMLAFFMAFIFNWLGFCLSFCITNTIAGRYGAICGFGLSL
120 130 140 150 160 170
100
mKIAA1 IKWILIVRVSILIIFM
:::::::: :
gi|702 IKWILIVRFSDYFTGYFNGQYWLWWIFLVLGLLLFFRGFVNYLKVRNMSESMAAAHRTRY
180 190 200 210 220 230
106 residues in 1 query sequences
2727779818 residues in 7921681 library sequences
Tcomplib [34.26] (2 proc)
start: Fri Mar 13 00:40:11 2009 done: Fri Mar 13 00:43:52 2009
Total Scan time: 517.230 Total Display time: 0.010
Function used was FASTA [version 34.26.5 April 26, 2007]