FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1073.ptfa, 424 aa vs ./tmplib.26680 library 1768593 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.1781+/-0.00409; mu= 16.9980+/- 0.274 mean_var=72.3885+/-16.200, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.1507 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4176 ( 401 res) mbg04205 ( 401) 1158 261 1.1e-70 mKIAA0647 ( 1186 res) mbg01911 (1186) 641 149 1.5e-36 mKIAA3020 ( 1884 res) mbg15810 (1884) 383 93 1.5e-19 mKIAA1682 ( 801 res) mbh02812 ( 801) 353 86 8.3e-18 >>mKIAA4176 ( 401 res) mbg04205 (401 aa) initn: 1070 init1: 1070 opt: 1158 Z-score: 1361.6 bits: 260.9 E(): 1.1e-70 Smith-Waterman score: 1158; 64.591% identity (65.098% ungapped) in 257 aa overlap (168-422:143-399) 140 150 160 170 180 190 mKIAA1 ANIPDEELKRVASFRSRGRIPVSRLSRYIHHFKTCFQLILAGALRIADKVESGKTSVVVH :. ..:.:.::...::.: :::.::.:: mKIAA4 HVMRESLKKVKDIVYPNIEESHWLSSLESTHWLEHIKLVLTGAIQVADQVSSGKSSVLVH 120 130 140 150 160 170 200 210 220 230 240 250 mKIAA1 CSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADR ::::::::::::::::::::..::::.:::.::.:::.::::.: :.:::::::::::: mKIAA4 CSDGWDRTAQLTSLAMLMLDSFYRTIEGFEILVQKEWISFGHKFASRIGHGDKNHADADR 180 190 200 210 220 230 260 270 280 290 300 310 mKIAA1 SPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKENLPKK ::.:::::::::::..:::::::::: ::::.::::::: ::::: : .. : ...: .. mKIAA4 SPIFLQFIDCVWQMSKQFPTAFEFNEGFLITVLDHLYSCRFGTFLFNCDSARERQKLTER 240 250 260 270 280 290 320 330 340 350 360 370 mKIAA1 TVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKPQEP--IH :::::: :::. . : ::.: . :.:::::::::::::::.::::::::.: :.: .. mKIAA4 TVSLWSLINSNKDKFKNPFYTKEINRVLYPVASMRHLELWVNYYIRWNPRVKQQQPNPVE 300 310 320 330 340 350 380 390 400 410 420 mKIAA1 SRYKELLAKRAELQRKVEELQREISNRSTSSSERASSPAQCVTPVQTVV .:: :::: : . ...:::: : . ... .:: .: : ::: mKIAA4 QRYMELLALRDDYIKRLEELQLANSAKLADAPASTSSSSQMVPHVQTHF 360 370 380 390 400 >>mKIAA0647 ( 1186 res) mbg01911 (1186 aa) initn: 766 init1: 602 opt: 641 Z-score: 748.7 bits: 149.0 E(): 1.5e-36 Smith-Waterman score: 641; 40.000% identity (41.803% ungapped) in 255 aa overlap (163-413:372-619) 140 150 160 170 180 190 mKIAA1 LLVVPANIPDEELKRVASFRSRGRIPVSRLSRYIHHFKTCFQLILAGALRIADKVESGKT .....:.. ..: .:. .:. :. mKIAA0 IHAIRNSFQYLRAVCSQMPDPSNWLSALESTKWLQHLS----VMLKAAVLVANTVDREGR 350 360 370 380 390 200 210 220 230 240 250 mKIAA1 SVVVHCSDGWDRTAQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNH :.:::::::::: :...:: ..:: ::::..::.::::..::.:::.: : :: .. . mKIAA0 PVLVHCSDGWDRTPQIVALAKILLDPYYRTLEGFQVLVESDWLDFGHKFGDRCGHQENAE 400 410 420 430 440 450 260 270 280 290 300 310 mKIAA1 ADADRSPVFLQFIDCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQRGKE . .. :::::..: : :. .::: ::::: ::. ...: ::::.:::: :. .: :. mKIAA0 DQNEQCPVFLQWLDSVHQLLKQFPCLFEFNEAFLVKLVQHTYSCLYGTFLANNPCEREKR 460 470 480 490 500 510 320 330 340 350 360 370 mKIAA1 NLPKKTVSLWSYINSQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKP-- :. :.: :.:. . . ..: : :: :. ::.:: .: :.::.. :. : .: mKIAA0 NIYKRTCSVWALLRAGNKNFHNFLYTPGSDVVLHPVCHVRALHLWTAVYL---PASSPCT 520 530 540 550 560 570 380 390 400 410 420 mKIAA1 -QEPIHSRYKELLAKRAELQ-RKVEELQREISNRSTSSSERASSPAQCVTPVQTVV : . : .:. :.. :....: . : . :. .::: mKIAA0 LGEENMDLYLSPVAQSQEFSGRSLDRLPKTRSMDDLLSACDTSSPLTRTSSDPNLNNHSQ 580 590 600 610 620 630 mKIAA0 EVRGSLEPWHSSPEGAETVIDSGVGSPQLTVGEMGLPPPLPSSQKEYLSNKPFKGHKSCS 640 650 660 670 680 690 >>mKIAA3020 ( 1884 res) mbg15810 (1884 aa) initn: 536 init1: 228 opt: 383 Z-score: 443.1 bits: 93.2 E(): 1.5e-19 Smith-Waterman score: 418; 37.436% identity (40.556% ungapped) in 195 aa overlap (176-357:1417-1609) 150 160 170 180 190 200 mKIAA1 KRVASFRSRGRIPVSRLSRYIHHFKTCFQLILAGALRIADKVESGKTSVVVHCSDGWDRT .: .. ... ..:: .::.: :::: : mKIAA3 CVPGCPATEPSPASFLRSLEDSEWLIQIHKLLQISVLVVELLDSG-SSVLVSLEDGWDIT 1390 1400 1410 1420 1430 1440 210 220 230 240 250 260 mKIAA1 AQLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFI .:..::..:. : .:::..::..:::::::::::::. : .: ..... .::::::. mKIAA3 TQVVSLVQLLSDPFYRTLEGFRLLVEKEWLSFGHRFSHRGAHTLAGQSSG-FTPVFLQFL 1450 1460 1470 1480 1490 1500 270 280 290 300 310 mKIAA1 DCVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQR----------GKENLP ::: :. ::: :::....: . : : : ::: .:. .: :.. mKIAA3 DCVHQVHLQFPMEFEFSQFYLKFLGYHHTSRRFRTFLLDSDYERIELGLLYEEKGERRGQ 1510 1520 1530 1540 1550 1560 320 330 340 350 360 370 mKIAA1 KKTVSLWSYIN---SQLEDFTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKPQE :.: :.. .. : : :. ...:: : ... .:..: mKIAA3 LACKSVWEYVDRLSKRTPMFYNYTYAPEDTEVLRPYSNVSNLKVWDFYTEETLAEGPPYD 1570 1580 1590 1600 1610 1620 380 390 400 410 420 mKIAA1 PIHSRYKELLAKRAELQRKVEELQREISNRSTSSSERASSPAQCVTPVQTVV mKIAA3 WELAQGPPEPPEEERPDGGAPQSRRRVVWPCYDSRPRVQPDAISRLLEELQRLETELGRP 1630 1640 1650 1660 1670 1680 >>mKIAA1682 ( 801 res) mbh02812 (801 aa) initn: 417 init1: 211 opt: 353 Z-score: 412.1 bits: 86.2 E(): 8.3e-18 Smith-Waterman score: 366; 36.000% identity (39.873% ungapped) in 175 aa overlap (177-337:424-595) 150 160 170 180 190 200 mKIAA1 RVASFRSRGRIPVSRLSRYIHHFKTCFQLILAGALRIADKVESGKTSVVVHCSDGWDRTA : :..:.. .:. ...:.. .. : mKIAA1 IDNSSEFWDTDIKWFSLLESSSWLDIIRRCLKKAIEITECLEAQNVNVLLLEENASDLCC 400 410 420 430 440 450 210 220 230 240 250 260 mKIAA1 QLTSLAMLMLDGYYRTIRGFEVLVEKEWLSFGHRFQLRVGHGDKNHADADRSPVFLQFID :.::...:.:.. :: ::. :..:::. :: : : .: ...: .. :.:: :.: mKIAA1 LLSSLVQVMMDAHCRTRTGFQSLIQKEWVMGGHSFLDRCNH--LHQSDKEEVPIFLLFLD 460 470 480 490 500 510 270 280 290 300 310 mKIAA1 CVWQMTRQFPTAFEFNEYFLITILDHLYSCLFGTFLCNSEQQR----GKENL-----PKK ::::...:.: ::::.: .: .. : :: .:.::. :: .:. :.::: : mKIAA1 CVWQLVHQYPPAFEFTETYLTVLSDSLYIPIFSTFFFNSPHQKDTNMGRENLDAQSKPLT 520 530 540 550 560 570 320 330 340 350 360 370 mKIAA1 TVSLWSYINSQLED-----FTNPLYGSYSNHVLYPVASMRHLELWVGYYIRWNPRMKPQE ...:.. . :.: . :::: mKIAA1 LLTVWDW-SVQFEPKAQTLLRNPLYVEKPKLDRGQQKGSRFKHQRQLSLPLTQSKSSPKR 580 590 600 610 620 630 424 residues in 1 query sequences 1768593 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:35:24 2006 done: Mon Mar 27 10:35:25 2006 Scan time: 0.630 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]