FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA2006.ptfa, 2383 aa
 vs ./tmplib.26680 library

1766634 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.4489+/-0.00576; mu= 7.1976+/- 0.382
 mean_var=173.6533+/-43.356, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0973

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 43, opt: 31, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1105  ( 292 res)   mej01470                   ( 292)  221   44 6.8e-05


>>mKIAA1105  ( 292 res)   mej01470                        (292 aa)
 initn: 191 init1: 110 opt: 221  Z-score: 180.2  bits: 44.3 E(): 6.8e-05
Smith-Waterman score: 221;  33.645% identity (33.962% ungapped) in 107 aa overlap (2268-2374:1-106)

      2240      2250      2260      2270      2280      2290       
mKIAA2 SDDVILESLTLVQLKEILKILEKLNENGKWKWLLHYRESKNLKEDVRVDSIAHKKNLILK
                                     .: .: . .:.:::  :... : .   .:.
mKIAA1                               QWKIHCKFQKKLKELGRMNTKALSLLTLLN
                                             10        20        30

      2300      2310      2320      2330      2340      2350       
mKIAA2 SYQSVNIIDLLHYHNCDSPSSTKAEIFKCLLNLQIQHISARFAVFLTDKPTVSTEIFENN
        ::. .....: ::.::: . .  :.  ::. :: :.:. :  ::::.:    .  . .:
mKIAA1 VYQKKHLVEILSYHSCDSQTRNAPEM-DCLIRLQAQNIQQRHIVFLTEKNIKMVSSYTDN
               40        50         60        70        80         

      2360      2370      2380                                     
mKIAA2 GILVTDVNYFTENIQKIAAPFRSSYW                                  
       ::.:. .. : .:. ...                                          
mKIAA1 GIVVATTEDFMQNFTSLVGYHNSVTEESLPPLLGANENLESQSALLENDEKDEEDMSLDS
      90       100       110       120       130       140         




2383 residues in 1 query   sequences
1766634 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:57:34 2006 done: Mon Mar 27 10:57:35 2006
 Scan time:  1.660 Display time:  0.030

Function used was FASTA [version 3.4t11 Apr 17, 2002]