FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0740.ptfa, 499 aa vs ./tmplib.26680 library 1768518 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.2677+/-0.00503; mu= 21.4193+/- 0.338 mean_var=117.9269+/-26.326, 0's: 0 Z-trim: 13 B-trim: 0 in 0/36 Lambda= 0.1181 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0717 ( 616 res) mbg08106 ( 616) 902 164 2.1e-41 mKIAA0878 ( 633 res) mpm04342 ( 633) 228 50 8e-07 mKIAA4249 ( 609 res) mfj01240 ( 609) 157 37 0.0034 mKIAA1900 ( 546 res) mbg06467 ( 546) 149 36 0.0083 >>mKIAA0717 ( 616 res) mbg08106 (616 aa) initn: 1589 init1: 893 opt: 902 Z-score: 835.6 bits: 164.4 E(): 2.1e-41 Smith-Waterman score: 1572; 58.629% identity (60.934% ungapped) in 423 aa overlap (1-407:191-613) 10 20 30 mKIAA0 DILPPEKGREVAKELGIPYYETSVFDQFGI .::::::::::::::::::::::: :::: mKIAA0 LVGCQLDLRYADLEAVNRARRPLARPIKPNEILPPEKGREVAKELGIPYYETSVVAQFGI 170 180 190 200 210 220 40 50 60 70 80 90 mKIAA0 KDVFDNAIRAALISRRHLQFWKSHLKKVQKPLLQAPFLPPKAPPPVIKVPECPSAGTSDA :::::::::::::::::::::::::..::.::::::::::: :::.: ::. ::.. mKIAA0 KDVFDNAIRAALISRRHLQFWKSHLRNVQRPLLQAPFLPPKPPPPIIVVPDPPSSSEECP 230 240 250 260 270 280 100 110 120 130 140 mKIAA0 ACLLDNPLCADVLFVLHDQEHIFAHRIYLATSSSKFYDLFLMECEESPCWG-GGAGEEVP : ::..::::::..::... .::::.:::.::::::::::::. :. : .:.: : mKIAA0 AHLLEDPLCADVILVLQERVRIFAHKIYLSTSSSKFYDLFLMDLSEGELGGPSGSGGPRP 290 300 310 320 330 340 150 160 170 180 190 mKIAA0 C--RDFQGRTQSLGSAEEGKEGPQRTPQADPGAS---SGQDLPESL-------ALQMEAS :. . . ..:.. :. . : : .: . : .: :. ... mKIAA0 EDHRSHPEQHHHHHHHHHGRDFLLRAASFDVCESVDEAGGSGPAGLRASTSDGILRGNGT 350 360 370 380 390 400 200 210 220 230 240 250 mKIAA0 G---SEGHALSGWSKGFVSMHREVRVNPISKRVGPVTVVRLDPSMQSGPFRTLLRFLYSG : ..:..::.::..:::...:. .:.. . ..::..: :.: ::::..:..::.: mKIAA0 GYLPGRGRVLSSWSRAFVSIQEEMAEDPLTFKSRLMVVVKMDNSIQPGPFRAVLKYLYTG 410 420 430 440 450 460 260 270 280 290 300 310 mKIAA0 QLDEKEKDLLGLAQMAEVLEMFDLRMMVENIMNKEAFMNQEITKAFHVRKANRIKECLSK .: :.:.::. .:..::.::.::::::: ::.:.:::::::::::::::..::.::::.: mKIAA0 ELGENERDLMHIAHIAELLEVFDLRMMVANILNNEAFMNQEITKAFHVRRTNRVKECLAK 470 480 490 500 510 520 320 330 340 350 360 370 mKIAA0 GTFSDVTFTLDDGAISAHKPLLICSCEWMAAMFGGSFVESANREVHLPNINKMSMQAVLE :::::::: ::::.::::::::: ::.:::::::: ::::..::: .: .: :.:::: mKIAA0 GTFSDVTFILDDGTISAHKPLLISSCDWMAAMFGGPFVESSTREVVFPYTSKSCMRAVLE 530 540 550 560 570 580 380 390 400 410 420 430 mKIAA0 YLYTKQLSPNLDLDPLELIALANRFCLTHLVALQFHNANQLAAWCLHHICTNYNSVCSKF :::: ... . ::: ..::.::::.:: ::::: mKIAA0 YLYTGMFTSSPDLDDMKLIVLANRLCLPHLVALTGN 590 600 610 440 450 460 470 480 490 mKIAA0 RKEIKSKSADNQEYFERHRWPPVWYLKEEDHYQRVKREREKEDLALNKHHSRRKWCFWHS >>mKIAA0878 ( 633 res) mpm04342 (633 aa) initn: 306 init1: 165 opt: 228 Z-score: 214.9 bits: 49.6 E(): 8e-07 Smith-Waterman score: 341; 25.145% identity (31.785% ungapped) in 517 aa overlap (7-480:182-633) 10 20 30 mKIAA0 DILPPEKGREVAKELGIPYYETSVFDQFGIKDVFDN .: ..::::: : : .:.: : : . mKIAA0 IAAVGTRQNEELPCTCPLCTSDRGSCVTTTEGIQLAKELGATYLELHSLDDFYIGKYFGG 160 170 180 190 200 210 40 50 60 70 80 90 mKIAA0 AIRAALISRRHLQFWKSHLKKVQKPLLQAPFLPPKAPPPVIKVPECPSAGT---SDAACL ... .:. . : . ..:: . . ::. : :.: . .. :: : mKIAA0 VLEYFMIQALN-QKTSEKMKKRKMTSSFHGIRPPQLEQPE-KMPVLKAEASHYHSDLNNL 220 230 240 250 260 100 110 120 130 140 150 mKIAA0 LDNPLCADVLFVLHDQEHIF-AHRIYLATSSSKFYDLFLMECEESPCWGGGAGEEVPCRD : :.::.: . . ::.: : . : :. :: .. :: : mKIAA0 LLCCQCVDVVFYHPEVTGVVEAHKIVLCSVSHVFMLLFNVK---SPA------------D 270 280 290 300 310 160 170 180 190 200 210 mKIAA0 FQGRTQSLGSAEEGKEGPQRTPQADPGASSGQDLPESLALQMEASGSEGHALSGWSKGFV .: . :: : :: .:.. .: .: : :. mKIAA0 IQDSSII------------RTTQ---------DL---FAINRDA------VLPGASQ--- 320 330 340 220 230 240 250 260 270 mKIAA0 SMHREVRVNPISKRVGPVTVVRLDPSMQSGPFRTLLRFLYSG--QLDEKEKDLLGLAQMA :. :: :. :. : . : . .:::.::: : .: :.:. .. mKIAA0 ----EAPSNP------PLPVIVKDALFCSC-LSDILRFIYSGAFQWEELEEDVR--RKLK 350 360 370 380 280 290 300 310 320 mKIAA0 EVLEMFDLRMMVENIMNKEAFMN-QEITKAFHVRK-----ANRIKECLSKGTFSDVTFTL . .. :. :. :.. . .: . :....:: . .: :.: ..::.: . mKIAA0 DSGDVSDIIEKVKCILKTPGKINCLRNCKTYQARKPLWFYNTSLKFFLNKPMLADVVFEI 390 400 410 420 430 440 330 340 350 360 370 380 mKIAA0 DDGAISAHKPLLICSCEWMAAMFGGSFVESANREVHLPNINKMSMQAVLEYLYTKQLSPN . ... ::. .:. :: :::::.:...:. . . . ...: .. . :::::: . : mKIAA0 QGATVPAHRAILVARCEVMAAMFNGNYMEAKSVLIPVYGVSKETFLSFLEYLYTDSCCPA 450 460 470 480 490 500 390 400 410 mKIAA0 LDLDPLELIALANRF--------C----LTHLVAL-------------------QFHNAN .. . :. :. . : .:.: .. .::... mKIAA0 GIFQAMCLLICAEMYQVSRLQHICELFIITQLQSMPSRELASMNLDIVDLLKKAKFHHSD 510 520 530 540 550 560 420 430 440 450 460 470 mKIAA0 QLAAWCLHHICTNYNSVCSKFRKEIKSKSADNQEYFERHRWPPVWYLKEEDHYQRVKRER :..: :: : ::: . :. . :... :.... . :.:::: :::. .:.. . : mKIAA0 CLSTWLLHFIATNY-LIFSQ-KPEFQDLSVEERSFVEKHRWPSNMYLKQLAEYRKYIHSR 570 580 590 600 610 620 480 490 mKIAA0 EKEDLALNKHHSRRKWCFWHSSPAVA . . :.. mKIAA0 KCRCLVM 630 >>mKIAA4249 ( 609 res) mfj01240 (609 aa) initn: 125 init1: 125 opt: 157 Z-score: 149.7 bits: 37.5 E(): 0.0034 Smith-Waterman score: 157; 27.007% identity (29.365% ungapped) in 137 aa overlap (300-426:43-178) 270 280 290 300 310 320 mKIAA0 AEVLEMFDLRMMVENIMNKEAFMNQEITKAFHVRKANRI-KECLSKGTFSDVTFTLDDGA .:..:: .. .: :.. . :::.. .: mKIAA4 PPACTKQGHQKPLDSKDENPEKHCPLTVNPWHMKKAFKVMNELRSQNLLCDVTIVAEDME 20 30 40 50 60 70 330 340 350 360 370 380 mKIAA0 ISAHKPLLICSCEWMAAMFGGSFVESANREVHLPNINKMSMQAVLEYLYTKQLS---PNL : ::. .: .. ::: : . :: ..:.. ... ... ...:.:: ... :. mKIAA4 IPAHRVVLAACSPYFHAMFTGEMSESRAKRVRIKEVDGWTLRMLVDYVYTAEIQVTEENV 80 90 100 110 120 130 390 400 410 420 430 mKIAA0 D--LDPLELIALAN--RFCLTHLVALQFHNANQLA--AWCLHHICTNYNSVCSKFRKEIK . : :. : . . : : . :.: .: :. :. : ::. mKIAA4 QVLLPAAGLLQLQDVKKTCCEFLES-QLHPVNCLGIRAFADMHACTDLLNKANTYAEQHF 140 150 160 170 180 190 440 450 460 470 480 490 mKIAA0 SKSADNQEYFERHRWPPVWYLKEEDHYQRVKREREKEDLALNKHHSRRKWCFWHSSPAVA mKIAA4 ADVVLSEEFLNLGIEQVCSLISSDKLTISSEEKVFEAVIAWVNHDKDVRQEFMARLMEHV 200 210 220 230 240 250 >>mKIAA1900 ( 546 res) mbg06467 (546 aa) initn: 126 init1: 126 opt: 149 Z-score: 142.7 bits: 36.0 E(): 0.0083 Smith-Waterman score: 149; 30.631% identity (33.663% ungapped) in 111 aa overlap (313-415:44-152) 290 300 310 320 330 340 mKIAA0 ENIMNKEAFMNQEITKAFHVRKANRIKECLSKGTFSDVTFTLDDGAISAHKPLLICSCEW : : . :::. .. . ::: .: .. mKIAA1 CSIQEMLTGQRLCHSETHNDTVLAALNQQRSDGILCDVTLIAEEQKFHAHKAVLAACSDY 20 30 40 50 60 70 350 360 370 380 390 mKIAA0 MAAMFGGSFVESANREVHLPNINKMSMQAVLEYLYTKQ--LSPNLDLD------PLELIA . :::. .:::. ::.: ........ .::. :: : : :.. : :.:. mKIAA1 FRAMFSLCMVESGADEVNLRGVTSLGLKQALEFAYTGQILLEPGVIQDVLAAGSHLQLLE 80 90 100 110 120 130 400 410 420 430 440 450 mKIAA0 LANRFCLTHLVALQFHNANQLAAWCLHHICTNYNSVCSKFRKEIKSKSADNQEYFERHRW : : .: .: . .... : : mKIAA1 LLN-LC-SHYLIQELNSFNYLDLYRLADLFHLTLLEKAVIDFLVKHLSELLKSRPEDVLT 140 150 160 170 180 190 499 residues in 1 query sequences 1768518 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:27:38 2006 done: Mon Mar 27 10:27:39 2006 Scan time: 0.700 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]