# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mef00242.fasta.nr -Q ../query/mKIAA1320.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1320, 150 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919434 sequences Expectation_n fit: rho(ln(x))= 4.9189+/-0.000179; mu= 7.3423+/- 0.010 mean_var=59.0329+/-11.696, 0's: 26 Z-trim: 33 B-trim: 1985 in 1/63 Lambda= 0.166927 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 36, opt: 24, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148673100|gb|EDL05047.1| HECT domain and ankyri ( 875) 986 245.5 1.3e-62 gi|123796888|sp|Q3U0D9.1|HACE1_MOUSE RecName: Full ( 909) 986 245.5 1.3e-62 gi|26335379|dbj|BAC31390.1| unnamed protein produc ( 909) 986 245.5 1.3e-62 gi|21739709|emb|CAD38890.1| hypothetical protein [ ( 318) 980 243.8 1.5e-62 gi|158258803|dbj|BAF85372.1| unnamed protein produ ( 318) 980 243.8 1.5e-62 gi|119568823|gb|EAW48438.1| HECT domain and ankyri ( 391) 980 243.8 1.8e-62 gi|221045570|dbj|BAH14462.1| unnamed protein produ ( 398) 980 243.8 1.9e-62 gi|194376682|dbj|BAG57487.1| unnamed protein produ ( 398) 980 243.8 1.9e-62 gi|194390614|dbj|BAG62066.1| unnamed protein produ ( 463) 980 243.9 2.1e-62 gi|158711729|ref|NP_001102009.2| HECT domain and a ( 909) 983 244.8 2.2e-62 gi|114608658|ref|XP_001142750.1| PREDICTED: HECT d ( 531) 980 243.9 2.4e-62 gi|55665133|emb|CAH71889.1| HECT domain and ankyri ( 562) 980 243.9 2.5e-62 gi|67967822|dbj|BAE00393.1| unnamed protein produc ( 593) 979 243.7 3e-62 gi|114608654|ref|XP_001142834.1| PREDICTED: HECT d ( 871) 980 244.0 3.5e-62 gi|55665134|emb|CAH71890.1| HECT domain and ankyri ( 903) 980 244.1 3.6e-62 gi|158256952|dbj|BAF84449.1| unnamed protein produ ( 909) 980 244.1 3.7e-62 gi|134034136|sp|Q8IYU2.2|HACE1_HUMAN RecName: Full ( 909) 980 244.1 3.7e-62 gi|23025730|gb|AAH34982.1| HECT domain and ankyrin ( 909) 980 244.1 3.7e-62 gi|114608652|ref|XP_518654.2| PREDICTED: HECT doma ( 909) 980 244.1 3.7e-62 gi|194669913|ref|XP_605958.4| PREDICTED: similar t ( 903) 972 242.1 1.4e-61 gi|194216292|ref|XP_001501786.2| PREDICTED: HECT d ( 909) 969 241.4 2.3e-61 gi|149640532|ref|XP_001506045.1| PREDICTED: simila (1055) 969 241.4 2.6e-61 gi|73973642|ref|XP_854232.1| PREDICTED: similar to ( 909) 960 239.2 1e-60 gi|73973652|ref|XP_868334.1| PREDICTED: similar to ( 941) 960 239.3 1.1e-60 gi|73973654|ref|XP_532247.2| PREDICTED: similar to ( 941) 960 239.3 1.1e-60 gi|126310375|ref|XP_001368043.1| PREDICTED: simila ( 910) 954 237.8 2.8e-60 gi|224048374|ref|XP_002196437.1| PREDICTED: HECT d ( 910) 935 233.2 6.7e-59 gi|123915887|sp|Q28BK1.1|HACE1_XENTR RecName: Full ( 912) 935 233.2 6.7e-59 gi|82200059|sp|Q6DCL5.1|HACE1_XENLA RecName: Full= ( 944) 935 233.2 6.9e-59 gi|189529482|ref|XP_701235.3| PREDICTED: similar t ( 637) 889 222.1 1.1e-55 gi|210115094|gb|EEA62849.1| hypothetical protein B ( 939) 729 183.6 5.9e-44 gi|193785964|dbj|BAG54751.1| unnamed protein produ ( 694) 663 167.6 2.8e-39 gi|73973646|ref|XP_868323.1| PREDICTED: similar to ( 694) 643 162.8 7.9e-38 gi|221116079|ref|XP_002158185.1| PREDICTED: simila ( 943) 629 159.5 1.1e-36 gi|198418195|ref|XP_002121858.1| PREDICTED: simila ( 820) 591 150.4 5.3e-34 gi|159104038|gb|EDP42929.1| hypothetical protein M ( 562) 574 146.2 6.7e-33 gi|223642076|emb|CAX44042.1| E3 ubiquitin-protein ( 823) 535 136.9 6.2e-30 gi|158283428|gb|EDP09178.1| predicted protein [Chl ( 424) 531 135.7 7e-30 gi|49654296|emb|CAG86767.1| DEHA2D03718p [Debaryom ( 781) 530 135.6 1.4e-29 gi|211591739|emb|CAP97985.1| Pc22g06970 [Penicilli (4045) 538 138.0 1.4e-29 gi|146449975|gb|EDK44231.1| E3 ubiquitin-protein l ( 818) 530 135.7 1.4e-29 gi|157335750|emb|CAO61580.1| unnamed protein produ ( 472) 527 134.8 1.5e-29 gi|46099347|gb|EAK84580.1| hypothetical protein UM ( 571) 527 134.8 1.7e-29 gi|149386333|gb|ABN66114.2| predicted protein [Pic ( 776) 527 134.9 2.2e-29 gi|163777296|gb|EDQ90913.1| predicted protein [Mon ( 431) 522 133.6 3.2e-29 gi|46436038|gb|EAK95408.1| probable Nedd4 family E ( 832) 525 134.5 3.3e-29 gi|220699070|gb|EED55409.1| ubiquitin-protein liga (1096) 525 134.5 4.1e-29 gi|83768086|dbj|BAE58225.1| unnamed protein produc (1367) 525 134.6 5e-29 gi|114194093|gb|EAU35793.1| HECT [Aspergillus terr (4033) 530 136.1 5.2e-29 gi|119400097|gb|EAW10523.1| ubiquitin-protein liga (4058) 530 136.1 5.3e-29 >>gi|148673100|gb|EDL05047.1| HECT domain and ankyrin re (875 aa) initn: 986 init1: 986 opt: 986 Z-score: 1280.4 bits: 245.5 E(): 1.3e-62 Smith-Waterman score: 986; 100.000% identity (100.000% similar) in 149 aa overlap (1-149:655-803) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|148 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 630 640 650 660 670 680 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 690 700 710 720 730 740 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 750 760 770 780 790 800 gi|148 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 810 820 830 840 850 860 >>gi|123796888|sp|Q3U0D9.1|HACE1_MOUSE RecName: Full=E3 (909 aa) initn: 986 init1: 986 opt: 986 Z-score: 1280.1 bits: 245.5 E(): 1.3e-62 Smith-Waterman score: 986; 100.000% identity (100.000% similar) in 149 aa overlap (1-149:689-837) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|123 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 660 670 680 690 700 710 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 720 730 740 750 760 770 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 780 790 800 810 820 830 gi|123 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 840 850 860 870 880 890 >>gi|26335379|dbj|BAC31390.1| unnamed protein product [M (909 aa) initn: 986 init1: 986 opt: 986 Z-score: 1280.1 bits: 245.5 E(): 1.3e-62 Smith-Waterman score: 986; 100.000% identity (100.000% similar) in 149 aa overlap (1-149:689-837) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|263 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 660 670 680 690 700 710 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 720 730 740 750 760 770 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 780 790 800 810 820 830 gi|263 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 840 850 860 870 880 890 >>gi|21739709|emb|CAD38890.1| hypothetical protein [Homo (318 aa) initn: 980 init1: 980 opt: 980 Z-score: 1279.0 bits: 243.8 E(): 1.5e-62 Smith-Waterman score: 980; 99.329% identity (100.000% similar) in 149 aa overlap (1-149:98-246) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|217 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 70 80 90 100 110 120 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|217 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 130 140 150 160 170 180 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|217 YELELLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 190 200 210 220 230 240 gi|217 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 250 260 270 280 290 300 >>gi|158258803|dbj|BAF85372.1| unnamed protein product [ (318 aa) initn: 980 init1: 980 opt: 980 Z-score: 1279.0 bits: 243.8 E(): 1.5e-62 Smith-Waterman score: 980; 99.329% identity (100.000% similar) in 149 aa overlap (1-149:98-246) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|158 NIYFTRSFYEHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 70 80 90 100 110 120 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 130 140 150 160 170 180 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|158 YELELLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 190 200 210 220 230 240 gi|158 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 250 260 270 280 290 300 >>gi|119568823|gb|EAW48438.1| HECT domain and ankyrin re (391 aa) initn: 980 init1: 980 opt: 980 Z-score: 1277.7 bits: 243.8 E(): 1.8e-62 Smith-Waterman score: 980; 99.329% identity (100.000% similar) in 149 aa overlap (1-149:171-319) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|119 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 150 160 170 180 190 200 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 210 220 230 240 250 260 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|119 YELELLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 270 280 290 300 310 320 gi|119 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 330 340 350 360 370 380 >>gi|221045570|dbj|BAH14462.1| unnamed protein product [ (398 aa) initn: 980 init1: 980 opt: 980 Z-score: 1277.6 bits: 243.8 E(): 1.9e-62 Smith-Waterman score: 980; 99.329% identity (100.000% similar) in 149 aa overlap (1-149:178-326) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|221 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 150 160 170 180 190 200 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|221 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 210 220 230 240 250 260 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|221 YELELLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 270 280 290 300 310 320 gi|221 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 330 340 350 360 370 380 >>gi|194376682|dbj|BAG57487.1| unnamed protein product [ (398 aa) initn: 980 init1: 980 opt: 980 Z-score: 1277.6 bits: 243.8 E(): 1.9e-62 Smith-Waterman score: 980; 99.329% identity (100.000% similar) in 149 aa overlap (1-149:178-326) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|194 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 150 160 170 180 190 200 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 210 220 230 240 250 260 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|194 YELELLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 270 280 290 300 310 320 gi|194 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 330 340 350 360 370 380 >>gi|194390614|dbj|BAG62066.1| unnamed protein product [ (463 aa) initn: 980 init1: 980 opt: 980 Z-score: 1276.6 bits: 243.9 E(): 2.1e-62 Smith-Waterman score: 980; 99.329% identity (100.000% similar) in 149 aa overlap (1-149:243-391) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|194 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 220 230 240 250 260 270 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|194 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 280 290 300 310 320 330 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR :::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|194 YELELLLSGMPEIDVSDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGS 340 350 360 370 380 390 gi|194 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 400 410 420 430 440 450 >>gi|158711729|ref|NP_001102009.2| HECT domain and ankyr (909 aa) initn: 983 init1: 983 opt: 983 Z-score: 1276.2 bits: 244.8 E(): 2.2e-62 Smith-Waterman score: 983; 99.329% identity (100.000% similar) in 149 aa overlap (1-149:689-837) 10 20 30 mKIAA1 KNLQWILDNDISDLGLELTFSVETDVFGAM :::::::::::::::::::::::::::::: gi|158 NIYFTRSFYKHILGIPVNYQDVASIDPEYAKNLQWILDNDISDLGLELTFSVETDVFGAM 660 670 680 690 700 710 40 50 60 70 80 90 mKIAA1 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|158 EEVPLKPGGGSILVTQNNKAEYVQLVTELRMTRAIQPQINAFLQGFHMFIPPSLIQLFDE 720 730 740 750 760 770 100 110 120 130 140 150 mKIAA1 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDITQEERVLLLQFVTGR ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|158 YELELLLSGMPEIDVNDWIKNTEYTSGYEREDPVIQWFWEVVEDMTQEERVLLLQFVTGS 780 790 800 810 820 830 gi|158 SRVPHGGFANIMGGSGLQNFTIAAVPYTPNLLPTSSTCINMLKLPEYPSKEILKDRLLVA 840 850 860 870 880 890 150 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 17:44:11 2009 done: Fri Mar 13 17:48:16 2009 Total Scan time: 593.220 Total Display time: 0.030 Function used was FASTA [version 34.26.5 April 26, 2007]