FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1800.ptfa, 493 aa vs ./tmplib.26680 library 1768524 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.3520+/-0.00413; mu= 16.9289+/- 0.276 mean_var=82.1597+/-19.090, 0's: 0 Z-trim: 2 B-trim: 161 in 1/35 Lambda= 0.1415 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA0948 ( 655 res) mpj00976 ( 655) 182 47 4.7e-06 mKIAA1792 ( 772 res) mbp14262 ( 772) 162 43 8.9e-05 >>mKIAA0948 ( 655 res) mpj00976 (655 aa) initn: 229 init1: 131 opt: 182 Z-score: 201.0 bits: 47.1 E(): 4.7e-06 Smith-Waterman score: 326; 24.902% identity (28.604% ungapped) in 510 aa overlap (11-487:169-645) 10 20 30 40 mKIAA1 KKQLKSTILLLSEELSSQQALIVLGAMEDMESRNSHLLKK : . : : .:.. ....: .... . mKIAA0 KEKALLAEDARFQRLVKLVDSQITCVWHGTLVKLLRSLYTLVLPQISKELQSVEQEVRWR 140 150 160 170 180 190 50 60 70 80 90 mKIAA1 IVSVLYKHLDNYKSIELLKIIQALTFLHFQ-SKELFMKLRELLLSRLEASVIPSEISVLV . . :::: . : . . .:.. : :.::. .: . : : . . :. .:: mKIAA0 LRRLKYKHL-----VFLAE--SCASFMKEQHSQELLAELL-MHLERRWTEINDSR--TLV 200 210 220 230 240 100 110 120 130 140 mKIAA1 SALSMLPHPHLSETAVSRIE----AVLPQCDFRELNDLVVCL----------MRWIQSDL . ..: : :::. ....: .. : :: ..: : .: :. : mKIAA0 TMMTMAGH--LSESLMNHLEDKCLELVEQFGPDELRKVLVTLAAQSRRSVPLLRAISYHL 250 260 270 280 290 300 150 160 170 180 mKIAA1 VC--LASTTGKQLDLLQKLDHLGRHRLQQSTNL--DLLWEELKSLKGE------------ : . : : ::: .:. :. : : : ::: . :: mKIAA0 VQKPFPMTKGMLLDLAYAYGKLSFHQTQVSQRLAADLLPFIPSMTPGEVARCAKSFAFLK 310 320 330 340 350 360 190 200 210 220 230 240 mKIAA1 WLHESLVEESIAALLRFMDEIDYSNIAKIHPFSVLAIILPFSILNYDPPQK-DEFFGACV ::. : : :: ..... :.. ...: :. ::. : :. :.::. mKIAA0 WLNLPLFEAFTQHLLSRVQDVSLSHVC--------SVLLAFARLNFHPEQEEDQFFSMVH 370 380 390 400 410 250 260 270 280 290 300 mKIAA1 QCCNSYLGTLDPGTLVFLGFSLAVLEYFPEDLLKKMFNIEFLAR-LDSQLEILPSSLSAR . . ::.:.:. : : ..: ::.. : :. ... . :: :.:. :.. :. mKIAA0 EKLDPVLGSLEPALQVDLVWALCVLQHVHETELHTVLHPGLHARFLESKS---PKDQST- 420 430 440 450 460 470 310 320 330 340 350 360 mKIAA1 IQFRLMELNRAVCLECPELQVPWFHDRFCQRQFNKDTGVMNGAQQQIYKMLAEVLGGHQC .: .:...: .. :: :: . :.. . .. :. :... . : .::. . mKIAA0 FQ-KLVHINTTALLEHPEYKGPFLPASAVAPIPSPSNKKMTPLQKELQETLKALLGNTDK 480 490 500 510 520 530 370 380 390 400 410 420 mKIAA1 VKPSALSPYYHTVGFECILDKRKKPLPYESHSIAPRKSLGMHWDSRVEPRLPPEAERIAI . . . : .. : .:: . :: .. .::. . .: ::: :.:::. mKIAA0 GSLEVATQYGWVLDAEVLLDADGHFLPLRNF-VAPH----LAQPVGNQP-LPPGAKRIAF 540 550 560 570 580 430 440 450 460 470 480 mKIAA1 ELLDVRAFCSNIPHLKGKSAMKKRHLEILGYRVIQIPYFEWNSMAMSTKDARMDYLREHL . : : : :. .. .::. :. :...::.:: . .... . ::.... mKIAA0 LRWEFPNFNSRSKDLLGRFVLARRHVLAAGFLVVDVPYYEW--LDLKSEWQKSAYLKDKM 590 600 610 620 630 640 490 mKIAA1 FGEGKS mKIAA0 RKAMAEELAK 650 >>mKIAA1792 ( 772 res) mbp14262 (772 aa) initn: 291 init1: 144 opt: 162 Z-score: 178.1 bits: 43.1 E(): 8.9e-05 Smith-Waterman score: 241; 21.300% identity (26.637% ungapped) in 554 aa overlap (14-488:247-768) 10 20 30 40 mKIAA1 KKQLKSTILLLSEELSSQQALIVLGAMEDMESRNSHLLKKIVS :.. .: :.: ... : ...: . : mKIAA1 SILKAFVDLRIPPSLSMLDVYETRFCHQVWEMTLDQLLLVADLWRNLGRRVPRFFKIFFS 220 230 240 250 260 270 50 60 70 80 90 100 mKIAA1 VLYKHLDNYKSIELLKIIQALTFLHFQSKELFMKLRELLLSRLEASVIPSEISVLVSALS : : . . .:...: . . ..:...:. :.:. .. :: :.... :. mKIAA1 YLNLHWRELSLSQLIHLIYIIGENRQVPQDLMQRLESLILKYVD-SVNLEEVGTIC--LG 280 290 300 310 320 330 110 120 130 140 150 160 mKIAA1 MLPHPHLSETAVSRIEAVLPQCDFRELNDLVVCLMRWIQSD-LVCLASTTGKQLDLLQKL .. : ...: : :. :...::. :. ..: :: . .. . .. mKIAA1 FFK----SSSSLS--EFVM-----RKIGDLACANMQHLSSHTLVHIL-----KMFRFTHV 340 350 360 370 170 180 190 200 210 mKIAA1 DHLGRHRLQQSTNLDLLWEELKSLKGEW-LHESLVEESIAAL-LRFMDEIDYS---NIAK ::. : ..: .. ... :: . .: .:. .. : : :. . : .:. mKIAA1 DHI--HFMKQFG--EIAPQRIPSLGVQGVMHLTLACSALRILDERVMNAVAASLPPRVAH 380 390 400 410 420 430 220 230 240 250 260 270 mKIAA1 IHPFSVLAIILPFSILNYDPPQKDEFFGACVQCCNSYLGTLD--PGTLVFLGFSLAVLEY . .: :. :. ::: ::. .::... .. . . .. : :. ..:: :: mKIAA1 CRSKDVAKILWSFGTLNYKPPNTEEFYSSLINEIHRKMPEFNQYPEHLLTCLIGLAFSEY 440 450 460 470 480 490 280 290 300 310 320 330 mKIAA1 FPEDLLKKMFNIEF--LARLDSQLEILPSSLSARIQFRLMELNRAVCLECPELQVPWFHD :: .... .. : ::. :..:. .:. :. .: .:::. . ... mKIAA1 FPVEFINVALSPGFVKLAQERSKFELTK---------ELFTLDGTVAIECPDYKGNRLNS 500 510 520 530 540 340 350 360 370 380 mKIAA1 RFCQRQ----FNKDTGVMNGAQQ--QIYKMLAEVLGGHQCVKPSALSPYYHTVGFECILD .. :. .: . : . . . .: .::: : .: . :. .. .: :: mKIAA1 HLQQETSANLWNLASKDMRSKPEFLETLYLLETMLGGPQYIKHHMILPHTRSSDLEVQLD 550 560 570 580 590 600 390 400 410 mKIAA1 KRKKPLPYESHSIAPR-------KSLGM-----------------HWDSRVE-----P-- ::.:..:.. . :..:. ......: : mKIAA1 ANMKPMPFNSEATPTEDGAQLRFKQVGVSLTDDLMNQLLKGKAKRYFQGQIELETGQPPM 610 620 630 640 650 660 420 430 440 mKIAA1 -------------------RL--------P-----PEAERIAIELLDVRAFCSNIPHLKG :: : : ..::.. . .: . : : mKIAA1 ELRKKTTVPLVNSGCNGTDRLGDGMVGLCPLAHMQPPLVKLAIQFTNKNQYCYGSRALLG 670 680 690 700 710 720 450 460 470 480 490 mKIAA1 KSAMKKRHLEILGYRVIQIPYFEWNSMAMSTKDARMDYLREHLFGEGKS ::.:.: .::::...:..:: . :. .. ::.:..: mKIAA1 LHNMKRRQLVQIGYRVVELPHWEWLPLLKRTRLEKLAYLHEKVFTSAL 730 740 750 760 770 493 residues in 1 query sequences 1768524 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:53:28 2006 done: Mon Mar 27 10:53:29 2006 Scan time: 0.750 Display time: 0.060 Function used was FASTA [version 3.4t11 Apr 17, 2002]