FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1983.ptfa, 426 aa vs ./tmplib.26680 library 1768591 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 8.8538+/-0.00642; mu= -1.0030+/- 0.422 mean_var=397.7082+/-96.936, 0's: 0 Z-trim: 8 B-trim: 0 in 0/36 Lambda= 0.0643 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4231 ( 1467 res) mfj06028 (1467) 326 44 5.7e-05 mFLJ00201 ( 640 res) mpm06260 ( 640) 302 42 0.00017 mKIAA1870 ( 857 res) mtj02754 ( 857) 294 41 0.00033 >>mKIAA4231 ( 1467 res) mfj06028 (1467 aa) initn: 738 init1: 230 opt: 326 Z-score: 181.6 bits: 44.4 E(): 5.7e-05 Smith-Waterman score: 364; 36.937% identity (50.307% ungapped) in 222 aa overlap (178-357:57-261) 150 160 170 180 190 200 mKIAA1 RPYCLDIDECATSNTTLCAHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEE : : : .: :: : :. : : . : mKIAA4 QQSNVDELGCSHLGQSYESRDVWKPEPCQICVCDSGSVLCDDI-IC---DEEPLDCPNPE 30 40 50 60 70 80 210 220 230 240 250 260 mKIAA1 KSENEVKAGTCCATCKEFSQMKQTVL---QLKQKMALLPNNAAELGKYVNGDKVLASNAY . : ::: : . : :: . : :. . :. ::: : .. mKIAA4 -----IPFGECCAICPQPST-PAPVLPDGHGPQGPKGDPGPPGIPGR--NGDPGLPGQPG 90 100 110 120 130 270 280 290 mKIAA1 LPGPPGLPG--------GQ-------------------------GPPGSPGPKGSPGFPG :::::: :: :: :::: ::: :: : :: mKIAA4 LPGPPGSPGICESCPTGGQNYSPQFDSYDVKSGVGGMGGYPGPAGPPGPPGPPGSSGHPG 140 150 160 170 180 190 300 310 320 330 340 mKIAA1 MPG------PPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGP :: :::.:: : :: :: : : ::.: : :: : :::: ::: mKIAA4 SPGSPGYQGPPGEPGQAGPAGPPGPPGAL-----GPAGPAGKDGESGRPGRPGERGLPGP 200 210 220 230 240 350 360 370 380 390 400 mKIAA1 PGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGS :: :: : : mKIAA4 PGIKGPAGMPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGDNGAPGPMGPRGAPGE 250 260 270 280 290 300 >>mFLJ00201 ( 640 res) mpm06260 (640 aa) initn: 1153 init1: 277 opt: 302 Z-score: 173.3 bits: 41.7 E(): 0.00017 Smith-Waterman score: 342; 46.491% identity (53.000% ungapped) in 114 aa overlap (243-356:375-474) 220 230 240 250 260 270 mKIAA1 VKAGTCCATCKEFSQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLP :. :. ::. .:: : .. : :: :.: mFLJ00 PGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQ--KGDLGLPGQPGLRGPSGIP 350 360 370 380 390 400 280 290 300 310 320 330 mKIAA1 GGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPG : ::: : ::.: ::. : :: :: :: .:..: . : ::.::::.:: mFLJ00 GLQGPAGPIGPQGLPGLKGEPGLPGPPG-EGKVG-----------EPGSAGPTGPPGVPG 410 420 430 440 450 340 350 360 370 380 390 mKIAA1 RHGSKGERGAPGPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQ : : : ::::: :: ::..: mFLJ00 SPGLTGPPGPPGPPGPPGAPGALDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHA 460 470 480 490 500 510 >>mKIAA1870 ( 857 res) mtj02754 (857 aa) initn: 485 init1: 192 opt: 294 Z-score: 167.9 bits: 41.1 E(): 0.00033 Smith-Waterman score: 329; 48.148% identity (58.427% ungapped) in 108 aa overlap (265-353:124-231) 240 250 260 270 280 290 mKIAA1 LKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGP---PGSPGPKGSPGFPG ::: :: : ::: :: :::: :: : mKIAA1 QQGAAGERGHSGAKGFLGIPGPSGPPGAKGLPGEPGSQGPQGPVGPPGEMGPKGPPGAVG 100 110 120 130 140 150 300 310 320 330 mKIAA1 MPGPPGQPGPRGSMGPMGPSPDLSHIKQ-------GRRGPVGP---------PGAPGRHG :: ::. : .:..::.:: . . : : : .::::: :: :.:: mKIAA1 EPGLPGDSGMKGDLGPLGPPGEQGLIGQRGEPGLEGDHGPVGPDGLKGDRGDPGPDGEHG 160 170 180 190 200 210 340 350 360 370 380 390 mKIAA1 SKGERGAPGPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFS ::..: : ::::::: mKIAA1 EKGQEGLKGEDGSPGPPGITGVPGREGKPGKQGEKGQRGAKGAKGHQGYLGEMGIPGEPG 220 230 240 250 260 270 426 residues in 1 query sequences 1768591 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:57:02 2006 done: Mon Mar 27 10:57:02 2006 Scan time: 0.650 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]