# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbp99003.fasta.nr -Q ../query/mKIAA1983.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1983, 426 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7881888 sequences Expectation_n fit: rho(ln(x))= 5.8656+/-0.000207; mu= 8.4110+/- 0.012 mean_var=129.9683+/-24.469, 0's: 33 Z-trim: 142 B-trim: 257 in 2/63 Lambda= 0.112501 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148677723|gb|EDL09670.1| collagen and calcium b ( 435) 3078 510.8 2.6e-142 gi|148677724|gb|EDL09671.1| collagen and calcium b ( 441) 3056 507.2 3.1e-141 gi|26330464|dbj|BAC28962.1| unnamed protein produc ( 408) 2961 491.7 1.3e-136 gi|26390553|dbj|BAC25916.1| unnamed protein produc ( 408) 2955 490.8 2.5e-136 gi|123780779|sp|Q3MI99.1|CCBE1_MOUSE RecName: Full ( 408) 2947 489.5 6.3e-136 gi|149064505|gb|EDM14708.1| rCG46976, isoform CRA_ ( 464) 2880 478.7 1.3e-132 gi|109507481|ref|XP_001065428.1| PREDICTED: simila ( 568) 2880 478.8 1.5e-132 gi|149064504|gb|EDM14707.1| rCG46976, isoform CRA_ ( 408) 2853 474.2 2.4e-131 gi|114673422|ref|XP_512156.2| PREDICTED: collagen ( 754) 2729 454.4 4.2e-125 gi|109122348|ref|XP_001090495.1| PREDICTED: simila ( 655) 2728 454.2 4.3e-125 gi|74738220|sp|Q6UXH8.1|CCBE1_HUMAN RecName: Full= ( 406) 2694 448.4 1.4e-123 gi|109506721|ref|XP_341625.3| PREDICTED: similar t ( 399) 2413 402.8 7.6e-110 gi|73945928|ref|XP_852585.1| PREDICTED: similar to ( 393) 2256 377.3 3.5e-102 gi|194034601|ref|XP_001925807.1| PREDICTED: simila ( 349) 2231 373.2 5.4e-101 gi|148677721|gb|EDL09668.1| collagen and calcium b ( 321) 2123 355.6 9.7e-96 gi|189530311|ref|XP_001923108.1| PREDICTED: hypoth ( 401) 1890 317.9 2.7e-84 gi|159155668|gb|AAI54644.1| LOC555629 protein [Dan ( 418) 1890 317.9 2.8e-84 gi|26352668|dbj|BAC39964.1| unnamed protein produc ( 243) 1557 263.6 3.6e-68 gi|47219888|emb|CAF97158.1| unnamed protein produc ( 320) 1521 257.9 2.5e-66 gi|28302161|gb|AAH46645.1| CCBE1 protein [Homo sap ( 215) 1416 240.7 2.6e-61 gi|149543673|ref|XP_001517255.1| PREDICTED: hypoth ( 227) 1374 233.9 3e-59 gi|149064503|gb|EDM14706.1| rCG46976, isoform CRA_ ( 240) 1295 221.1 2.3e-55 gi|47220921|emb|CAG03128.1| unnamed protein produc ( 306) 945 164.4 3.4e-38 gi|34365093|emb|CAE45902.1| hypothetical protein [ ( 135) 628 112.5 6e-23 gi|148677720|gb|EDL09667.1| collagen and calcium b ( 126) 594 107.0 2.6e-21 gi|91076498|ref|XP_973054.1| PREDICTED: similar to ( 809) 589 107.1 1.6e-20 gi|109506672|ref|XP_225862.4| PREDICTED: similar t ( 78) 443 82.2 4.6e-14 gi|88174614|gb|ABD39382.1| putative galectin prote ( 290) 379 72.5 1.5e-10 gi|7378657|emb|CAB85466.1| putative cuticular coll ( 280) 371 71.2 3.5e-10 gi|210124318|gb|EEA72015.1| hypothetical protein B ( 274) 369 70.8 4.4e-10 gi|158602500|gb|EDP38915.1| Nematode cuticle colla ( 283) 368 70.7 5e-10 gi|48994844|gb|AAT48109.1| mutant collagen alpha 1 ( 491) 368 71.0 7.2e-10 gi|164372211|gb|ABY51978.1| nb001 [Hydra magnipapi ( 165) 361 69.3 7.7e-10 gi|223047639|gb|ACM79860.1| nematocyte-specific mi ( 171) 361 69.3 7.8e-10 gi|223047498|gb|ACM79822.1| nematoblast-specific p ( 174) 361 69.3 7.9e-10 gi|221122118|ref|XP_002158575.1| PREDICTED: hypoth ( 177) 361 69.3 8e-10 gi|169154444|emb|CAQ14993.1| novel protein similar ( 711) 369 71.3 8.2e-10 gi|209484159|gb|ACI47556.1| collagen type VIII alp ( 711) 369 71.3 8.2e-10 gi|210112707|gb|EEA60482.1| hypothetical protein B ( 450) 366 70.6 8.5e-10 gi|157013496|gb|EAA00623.4| AGAP011620-PA [Anophel (1065) 367 71.2 1.3e-09 gi|187033720|emb|CAP27355.1| C. briggsae CBR-COL-6 ( 329) 360 69.5 1.4e-09 gi|221120662|ref|XP_002157522.1| PREDICTED: simila ( 177) 355 68.4 1.6e-09 gi|158599441|gb|EDP37047.1| Cuticle collagen C09G5 ( 326) 357 69.0 1.9e-09 gi|212510655|gb|EEB13791.1| collagen alpha-1 precu (1732) 364 70.9 2.6e-09 gi|26348681|dbj|BAC37980.1| unnamed protein produc ( 799) 359 69.7 2.7e-09 gi|123122921|emb|CAM20992.1| procollagen type IV a ( 799) 359 69.7 2.7e-09 gi|158590591|gb|EDP29206.1| cuticle collagen 1 pre ( 234) 351 67.8 3e-09 gi|72016099|ref|XP_786229.1| PREDICTED: similar to (1584) 361 70.4 3.4e-09 gi|224048279|ref|XP_002190693.1| PREDICTED: simila ( 677) 356 69.2 3.4e-09 gi|27696597|gb|AAH43317.1| Col4a5 protein [Mus mus ( 585) 355 68.9 3.5e-09 >>gi|148677723|gb|EDL09670.1| collagen and calcium bindi (435 aa) initn: 3078 init1: 3078 opt: 3078 Z-score: 2711.3 bits: 510.8 E(): 2.6e-142 Smith-Waterman score: 3078; 99.765% identity (100.000% similar) in 426 aa overlap (1-426:10-435) 10 20 30 40 50 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHT ::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 GGCGRGASLGTAQGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHT 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 WTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYKFVLGQCIPEDYDI :::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::: gi|148 WTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDI 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 CAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 CAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICIN 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 TMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 TMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQT 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 VLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPG 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 MPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 MPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGP 310 320 330 340 350 360 360 370 380 390 400 410 mKIAA1 PGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSR 370 380 390 400 410 420 420 mKIAA1 RTEARDPEAPRNFYP ::::::::::::::: gi|148 RTEARDPEAPRNFYP 430 >>gi|148677724|gb|EDL09671.1| collagen and calcium bindi (441 aa) initn: 3056 init1: 3056 opt: 3056 Z-score: 2691.9 bits: 507.2 E(): 3.1e-141 Smith-Waterman score: 3056; 99.292% identity (100.000% similar) in 424 aa overlap (3-426:18-441) 10 20 30 40 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLL ..::::::::::::::::::::::::::::::::::::::::: gi|148 MGNTAKWRTERNKHTIFSKGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLL 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA1 LALGHTWTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYKFVLGQCI :::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::: gi|148 LALGHTWTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCI 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA1 PEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLC 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA1 AHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEF 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA1 SQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKG 250 260 270 280 290 300 290 300 310 320 330 340 mKIAA1 SPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 SPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGP 310 320 330 340 350 360 350 360 370 380 390 400 mKIAA1 PGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 PGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGS 370 380 390 400 410 420 410 420 mKIAA1 GDDYSRRTEARDPEAPRNFYP ::::::::::::::::::::: gi|148 GDDYSRRTEARDPEAPRNFYP 430 440 >>gi|26330464|dbj|BAC28962.1| unnamed protein product [M (408 aa) initn: 2961 init1: 2961 opt: 2961 Z-score: 2609.0 bits: 491.7 E(): 1.3e-136 Smith-Waterman score: 2961; 99.755% identity (100.000% similar) in 408 aa overlap (19-426:1-408) 10 20 30 40 50 60 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPED :::::::::::::::::::::::::::::::::::::::::: gi|263 MVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPED 10 20 30 40 70 80 90 100 110 120 mKIAA1 RDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYKFVLGQCIPEDYDICAQAPCEQQ ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|263 RDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDICAQAPCEQQ 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA1 CTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 CTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCEC 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA1 REGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 REGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA1 LLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA1 PRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 PRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA1 VLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEA 350 360 370 380 390 400 mKIAA1 PRNFYP :::::: gi|263 PRNFYP >>gi|26390553|dbj|BAC25916.1| unnamed protein product [M (408 aa) initn: 2955 init1: 2955 opt: 2955 Z-score: 2603.7 bits: 490.8 E(): 2.5e-136 Smith-Waterman score: 2955; 99.510% identity (100.000% similar) in 408 aa overlap (19-426:1-408) 10 20 30 40 50 60 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPED :::::::::::::::::::::::::::::::::::::::::: gi|263 MVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPED 10 20 30 40 70 80 90 100 110 120 mKIAA1 RDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYKFVLGQCIPEDYDICAQAPCEQQ ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|263 RDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDICAQAPCEQQ 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA1 CTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 CTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCEC 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA1 REGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 REGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA1 LLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 LLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA1 PRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLL :.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 PQGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA1 VLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|263 VLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEA 350 360 370 380 390 400 mKIAA1 PRNFYP :::::: gi|263 PRNFYP >>gi|123780779|sp|Q3MI99.1|CCBE1_MOUSE RecName: Full=Col (408 aa) initn: 2947 init1: 2947 opt: 2947 Z-score: 2596.7 bits: 489.5 E(): 6.3e-136 Smith-Waterman score: 2947; 99.510% identity (99.755% similar) in 408 aa overlap (19-426:1-408) 10 20 30 40 50 60 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPED :::::::::::::::::::::::::::::::::::::::::: gi|123 MVPPPLPSRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPED 10 20 30 40 70 80 90 100 110 120 mKIAA1 RDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYKFVLGQCIPEDYDICAQAPCEQQ ::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::: gi|123 RDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDICAQAPCEQQ 50 60 70 80 90 100 130 140 150 160 170 180 mKIAA1 CTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 CTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCEC 110 120 130 140 150 160 190 200 210 220 230 240 mKIAA1 REGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 REGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKMA 170 180 190 200 210 220 250 260 270 280 290 300 mKIAA1 LLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQPG :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: gi|123 LLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGLPGQPG 230 240 250 260 270 280 310 320 330 340 350 360 mKIAA1 PRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 PRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLLL 290 300 310 320 330 340 370 380 390 400 410 420 mKIAA1 VLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 VLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPEA 350 360 370 380 390 400 mKIAA1 PRNFYP :::::: gi|123 PRNFYP >>gi|149064505|gb|EDM14708.1| rCG46976, isoform CRA_c [R (464 aa) initn: 2877 init1: 2877 opt: 2880 Z-score: 2537.3 bits: 478.7 E(): 1.3e-132 Smith-Waterman score: 2880; 96.126% identity (98.305% similar) in 413 aa overlap (15-426:53-464) 10 20 30 40 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLP-SRGGAAKRQLGKSLGPLL :::::::: :: :::::.: :::::::::: gi|149 LYGNTAKCVLKEASTQFSPRERARVPRRSRRASPMVPP-LPLSRGGAVKGQLGKSLGPLL 30 40 50 60 70 80 50 60 70 80 90 100 mKIAA1 LLLALGHTWTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYKFVLGQ ::::::::::.::::::::::::::::::::::::::::::::::::::::.:::::::: gi|149 LLLALGHTWTFREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQ 90 100 110 120 130 140 110 120 130 140 150 160 mKIAA1 CIPEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTT ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::.::: gi|149 CIPEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKREKPYCLDIDECATGNTT 150 160 170 180 190 200 170 180 190 200 210 220 mKIAA1 LCAHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCK :::: :.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 LCAHTCVNTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCK 210 220 230 240 250 260 230 240 250 260 270 280 mKIAA1 EFSQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGP :::::::::::::::..::::::::::::::::::::::.:::::::::::::::::::: gi|149 EFSQMKQTVLQLKQKISLLPNNAAELGKYVNGDKVLASNTYLPGPPGLPGGQGPPGSPGP 270 280 290 300 310 320 290 300 310 320 330 340 mKIAA1 KGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAP :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|149 KGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGLKGERGAP 330 340 350 360 370 380 350 360 370 380 390 400 mKIAA1 GPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDF ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|149 GPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRIHSSAEDFPLPQEFSSYPETLDF 390 400 410 420 430 440 410 420 mKIAA1 GSGDDYSRRTEARDPEAPRNFYP :::::::::::::: :::::::: gi|149 GSGDDYSRRTEARDSEAPRNFYP 450 460 >>gi|109507481|ref|XP_001065428.1| PREDICTED: similar to (568 aa) initn: 2877 init1: 2877 opt: 2880 Z-score: 2536.2 bits: 478.8 E(): 1.5e-132 Smith-Waterman score: 2880; 96.126% identity (98.305% similar) in 413 aa overlap (15-426:157-568) 10 20 30 40 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLP-SRGGAAKRQLGKSLGPLL :::::::: :: :::::.: :::::::::: gi|109 LCWREGKAAAAAEPPRAQRRERARVPRRSRRASPMVPP-LPLSRGGAVKGQLGKSLGPLL 130 140 150 160 170 180 50 60 70 80 90 100 mKIAA1 LLLALGHTWTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYKFVLGQ ::::::::::.::::::::::::::::::::::::::::::::::::::::.:::::::: gi|109 LLLALGHTWTFREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQ 190 200 210 220 230 240 110 120 130 140 150 160 mKIAA1 CIPEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTT ::::::::::::::::::::::::::::::::::::::::::::.:::::::::::.::: gi|109 CIPEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKREKPYCLDIDECATGNTT 250 260 270 280 290 300 170 180 190 200 210 220 mKIAA1 LCAHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCK :::: :.::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LCAHTCVNTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCK 310 320 330 340 350 360 230 240 250 260 270 280 mKIAA1 EFSQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGP :::::::::::::::..::::::::::::::::::::::.:::::::::::::::::::: gi|109 EFSQMKQTVLQLKQKISLLPNNAAELGKYVNGDKVLASNTYLPGPPGLPGGQGPPGSPGP 370 380 390 400 410 420 290 300 310 320 330 340 mKIAA1 KGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAP :::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::: gi|109 KGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGLKGERGAP 430 440 450 460 470 480 350 360 370 380 390 400 mKIAA1 GPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDF ::::::::::::::::::::::::::::::::::::: :::::::::::::::::::::: gi|109 GPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRIHSSAEDFPLPQEFSSYPETLDF 490 500 510 520 530 540 410 420 mKIAA1 GSGDDYSRRTEARDPEAPRNFYP :::::::::::::: :::::::: gi|109 GSGDDYSRRTEARDSEAPRNFYP 550 560 >>gi|149064504|gb|EDM14707.1| rCG46976, isoform CRA_b [R (408 aa) initn: 2850 init1: 2850 opt: 2853 Z-score: 2514.2 bits: 474.2 E(): 2.4e-131 Smith-Waterman score: 2853; 96.305% identity (98.522% similar) in 406 aa overlap (22-426:3-408) 10 20 30 40 50 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLP-SRGGAAKRQLGKSLGPLLLLLALGHTWTYREEPE :::: :::::.: ::::::::::::::::::::.::::: gi|149 MVPPLPLSRGGAVKGQLGKSLGPLLLLLALGHTWTFREEPE 10 20 30 40 60 70 80 90 100 110 mKIAA1 DRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYKFVLGQCIPEDYDICAQAPCEQ :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: gi|149 DRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCKGYKFVLGQCIPEDYDICAQAPCEQ 50 60 70 80 90 100 120 130 140 150 160 170 mKIAA1 QCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECATSNTTLCAHICINTMGSYHCE ::::::::::::::::::::::::::::.:::::::::::.::::::: :.::::::::: gi|149 QCTDNFGRVLCTCYPGYRYDRERHQKREKPYCLDIDECATGNTTLCAHTCVNTMGSYHCE 110 120 130 140 150 160 180 190 200 210 220 230 mKIAA1 CREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::. gi|149 CREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTCCATCKEFSQMKQTVLQLKQKI 170 180 190 200 210 220 240 250 260 270 280 290 mKIAA1 ALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQP .::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::: gi|149 SLLPNNAAELGKYVNGDKVLASNTYLPGPPGLPGGQGPPGSPGPKGSPGFPGMPGPPGQP 230 240 250 260 270 280 300 310 320 330 340 350 mKIAA1 GPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKGERGAPGPPGSPGPPGSFDFLL :::::::::::::::::::::::::::::::::::: ::::::::::::::::::::::: gi|149 GPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGLKGERGAPGPPGSPGPPGSFDFLL 290 300 310 320 330 340 360 370 380 390 400 410 mKIAA1 LVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDPE ::::::::::::::::::::: :::::::::::::::::::::::::::::::::::: : gi|149 LVLADIRNDIAELQEKVFGHRIHSSAEDFPLPQEFSSYPETLDFGSGDDYSRRTEARDSE 350 360 370 380 390 400 420 mKIAA1 APRNFYP ::::::: gi|149 APRNFYP >>gi|114673422|ref|XP_512156.2| PREDICTED: collagen and (754 aa) initn: 1511 init1: 1443 opt: 2729 Z-score: 2402.3 bits: 454.4 E(): 4.2e-125 Smith-Waterman score: 2729; 88.995% identity (96.172% similar) in 418 aa overlap (9-426:339-754) 10 20 30 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLPSRGGAAKRQLGKS :: ::: :: ::::: :::::::. :::.: gi|114 KRPCSPAPPAGKREGGGGRGGAGRLVRTELGAGKKPGASLMVPPP-PSRGGAARGQLGRS 310 320 330 340 350 360 40 50 60 70 80 90 mKIAA1 LGPLLLLLALGHTWTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFRKKCCEGYK :::::::::::::::::::::: :::.:::.::.::::::::::::::::.:::::.::: gi|114 LGPLLLLLALGHTWTYREEPEDGDREICSESKIATTKYPCLKSSGELTTCYRKKCCKGYK 370 380 390 400 410 420 100 110 120 130 140 150 mKIAA1 FVLGQCIPEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPYCLDIDECA ::::::::::::.::.:::::::::::::::::::::::::::::.:::.:::::::::: gi|114 FVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPYCLDIDECA 430 440 450 460 470 480 160 170 180 190 200 210 mKIAA1 TSNTTLCAHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSENEVKAGTC .:: ::::::::::.:::.:::::::: ::::.::::::::::::::: :::: :::::: gi|114 SSNGTLCAHICINTLGSYRCECREGYIQEDDGKTCTRGDKYPNDTGHE-KSENVVKAGTC 490 500 510 520 530 540 220 230 240 250 260 270 mKIAA1 CATCKEFSQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPGLPGGQGPP ::::::: ::::::::::::.::::::::.::::..::::::::.::::::::::::::: gi|114 CATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNTYLPGPPGLPGGQGPP 550 560 570 580 590 600 280 290 300 310 320 330 mKIAA1 GSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRHGSKG ::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::: gi|114 GSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGAPGRDGSKG 610 620 630 640 650 660 340 350 360 370 380 390 mKIAA1 ERGAPGPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPLPQEFSSYP ::::::: ::::::::::::::.::::::::.::::::::::::::::.::::::: ::: gi|114 ERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPLPQEFPSYP 670 680 690 700 710 720 400 410 420 mKIAA1 ETLDFGSGDDYSRRTEARDPEAPRNFYP :..:.:::::. ::::.:: .:::.::: gi|114 EAMDLGSGDDHPRRTETRDLRAPRDFYP 730 740 750 >>gi|109122348|ref|XP_001090495.1| PREDICTED: similar to (655 aa) initn: 1499 init1: 1450 opt: 2728 Z-score: 2402.2 bits: 454.2 E(): 4.3e-125 Smith-Waterman score: 2728; 87.089% identity (94.836% similar) in 426 aa overlap (1-426:232-655) 10 20 30 mKIAA1 GTAQGESSGAEKKPRASPMVPPPLPSRGGA : . : :. ::: :: ::::: :::::: gi|109 DLCSPCRWCKRPCSPAPPAGKREGGGRGGAGRGAGTELGSGKKPGASLMVPPP-PSRGGA 210 220 230 240 250 260 40 50 60 70 80 90 mKIAA1 AKRQLGKSLGPLLLLLALGHTWTYREEPEDRDREVCSENKITTTKYPCLKSSGELTTCFR :. :::.::::::::::::::::::::::: :::.:::.::.:::::::: .::::::.: gi|109 ARGQLGRSLGPLLLLLALGHTWTYREEPEDGDREICSESKIATTKYPCLKPTGELTTCYR 270 280 290 300 310 320 100 110 120 130 140 150 mKIAA1 KKCCEGYKFVLGQCIPEDYDICAQAPCEQQCTDNFGRVLCTCYPGYRYDRERHQKRERPY ::::.:::::::::::::::.::.:::::::::::::::::::::::::::::.:::.:: gi|109 KKCCKGYKFVLGQCIPEDYDVCAEAPCEQQCTDNFGRVLCTCYPGYRYDRERHRKREKPY 330 340 350 360 370 380 160 170 180 190 200 210 mKIAA1 CLDIDECATSNTTLCAHICINTMGSYHCECREGYILEDDGRTCTRGDKYPNDTGHEEKSE ::::::::.:: ::::::::::.:::.:::::::: ::::.:::.::::::::::: ::: gi|109 CLDIDECASSNGTLCAHICINTLGSYRCECREGYIQEDDGKTCTKGDKYPNDTGHE-KSE 390 400 410 420 430 220 230 240 250 260 270 mKIAA1 NEVKAGTCCATCKEFSQMKQTVLQLKQKMALLPNNAAELGKYVNGDKVLASNAYLPGPPG : ::::::::::::: ::::::::::::.::::::::.::::..:::::::::::::::: gi|109 NAVKAGTCCATCKEFYQMKQTVLQLKQKIALLPNNAADLGKYITGDKVLASNAYLPGPPG 440 450 460 470 480 490 280 290 300 310 320 330 mKIAA1 LPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 LPGGQGPPGSPGPKGSPGFPGMPGPPGQPGPRGSMGPMGPSPDLSHIKQGRRGPVGPPGA 500 510 520 530 540 550 340 350 360 370 380 390 mKIAA1 PGRHGSKGERGAPGPPGSPGPPGSFDFLLLVLADIRNDIAELQEKVFGHRTHSSAEDFPL ::: ::::::::::: ::::::::::::::.::::::::.::::::::::::::::.::: gi|109 PGRDGSKGERGAPGPRGSPGPPGSFDFLLLMLADIRNDITELQEKVFGHRTHSSAEEFPL 560 570 580 590 600 610 400 410 420 mKIAA1 PQEFSSYPETLDFGSGDDYSRRTEARDPEAPRNFYP :::: ::::..:.:::::. ::::.:: .:::.::: gi|109 PQEFPSYPEAMDLGSGDDHPRRTETRDLRAPRDFYP 620 630 640 650 426 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Mon Mar 16 15:43:20 2009 done: Mon Mar 16 15:49:53 2009 Total Scan time: 888.300 Total Display time: 0.120 Function used was FASTA [version 34.26.5 April 26, 2007]