FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1934.ptfa, 447 aa
 vs ./tmplib.26680 library

1768570 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.9862+/-0.00487; mu= 14.3008+/- 0.326
 mean_var=100.8800+/-22.986, 0's: 0 Z-trim: 4  B-trim: 30 in 1/35
 Lambda= 0.1277

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0883  ( 389 res)   mfj65371                   ( 389)  857  168   1e-42


>>mKIAA0883  ( 389 res)   mfj65371                        (389 aa)
 initn: 826 init1: 480 opt: 857  Z-score: 859.4  bits: 168.0 E(): 1e-42
Smith-Waterman score: 857;  38.674% identity (39.886% ungapped) in 362 aa overlap (3-355:23-382)

                                   10        20        30        40
mKIAA1                     REGTMAVALLDDWCKGMDLDPKKAVLIVGIPVQYTEAAIN
                             ::::::::..::: : .: .:..:.: :::.  :  :.
mKIAA0 RDRAFGPRGFETSWRPSPEAYPGTMAVALLEEWCKIMGVDVQKSLLVVDIPVDCGEPEIQ
               10        20        30        40        50        60

               50        60        70        80        90       100
mKIAA1 DALKEGLPPLCAYKVIGRMFRREDEAKAVLIELPEVVDYTMMPTHIPAEGGAWEVVVKPR
        .:.:.:  . .:...:..:...:....::.:: : .:....:... ..::.:.:. :  
mKIAA0 TVLQEALKCVGSYRLLGKIFQKQDNTSVVLVELMEDTDMSVVPSEVQGKGGVWKVIFKTP
               70        80        90       100       110       120

              110       120          130         140         150   
mKIAA1 SPDDEFMNKLIYFLRDEGRRIVDVAKAL---GFS--TVPTGKIEL--KNLDQDKPKGLKS
       . : ::...:  ::. ::. .. . .::   : :  : :  . ::  .   :   .: . 
mKIAA0 NQDTEFLQRLNLFLEKEGQTVAGMFRALKHEGVSPATPPCTSPELLAHLTGQAMVHGQRP
              130       140       150       160       170       180

           160       170       180       190       200       210   
mKIAA1 LCNNSTCYKKLKVFSGSPFPGPGEESFETWLEEVTELMQLWQVSEREKKQCLLESLRGSA
       :   . :  :...::::   .: :: ::.:::..::. . : . : :::. . ::::: :
mKIAA0 LLPVKYC--KMRIFSGSTAAAPEEEPFEVWLEQATEIAKEWPIPEAEKKRWVAESLRGPA
                190       200       210       220       230        

           220       230       240       250       260       270   
mKIAA1 LSIMQALWTSNDSLTVEQCLKALKHIFGNKEDSKVLQFRFLQSSQKPAEKVSDYLLRLEP
       :..:. . ..: :..: .::.:.:..::. :. .. : ..:.. :. .::.: :.:::: 
mKIAA0 LDLMHIVQADNPSISVGECLEAFKQVFGSTESRRTSQVKYLRTYQQEGEKISAYVLRLET
      240       250       260       270       280       290        

           280       290       300       310       320       330   
mKIAA1 LLQKAVQQSPLSAHSADSIRLKHVLSQVSMTTGLRGKLSLLDQQGCPPTFLELMKLTRDE
       ::..::..  .  . ::..::..:.. ... . :  .:. : .::  ::::.:::. :.:
mKIAA0 LLRRAVEKRAIPRNIADQVRLEQVMAGANLGNVLWCRLQELKDQGPLPTFLQLMKVIREE
      300       310       320       330       340       350        

           340         350       360       370       380       390 
mKIAA1 EEWESTVVVEE--QEQVRRDSSACEAANEVVTQAEDSREVSTQTTGEEMTSVKRRRLLWR
       :: :..   .:  .:  .:..:.:                                    
mKIAA0 EEEEDAYFEQESREEPGEREGSGCWNNSRNN                             
      360       370       380                                      




447 residues in 1 query   sequences
1768570 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:56:11 2006 done: Mon Mar 27 10:56:12 2006
 Scan time:  0.700 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]