FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0191.ptfa, 1556 aa
 vs ./tmplib.26680 library

1767461 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 11.8465+/-0.00866; mu= -14.9305+/- 0.570
 mean_var=506.4166+/-123.746, 0's: 0 Z-trim: 5  B-trim: 0 in 0/36
 Lambda= 0.0570

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00132  ( 870 res)   msh02074                   ( 870)  384   47 1.6e-05


>>mFLJ00132  ( 870 res)   msh02074                        (870 aa)
 initn: 511 init1: 226 opt: 384  Z-score: 191.6  bits: 47.4 E(): 1.6e-05
Smith-Waterman score: 384;  33.473% identity (37.559% ungapped) in 239 aa overlap (952-1176:337-563)

             930       940       950       960       970        980
mKIAA0 LCLFGSSKNGFGFRDSDLDICMTLEGHENAEKLNCKEIIENLAKILKRH-PGLRNILPIT
                                     :: .   ..: ...::.   ::.  .  . 
mFLJ00 SLPPVSPLQEDRKEGKQGKELELAEEASKDEKEEAAAVLELVGSILRGCVPGVYRVQTVP
        310       320       330       340       350       360      

              990      1000      1010      1020      1030      1040
mKIAA0 TAKVPIVKFEHRRSGLEGDISLYNTLAQHNTRMLATYAAIDPRVQYLGYTMKVFAKRCDI
       .:. :.::: :: :::.::.:: : :: .:.:.:   . .: ::. : ::.. .:..  .
mFLJ00 SARRPVVKFCHRPSGLHGDVSLSNRLALYNSRFLNLCSEMDGRVRPLVYTLRCWAQHNGL
        370       380       390       400       410       420      

             1050      1060      1070          1080      1090      
mKIAA0 GDASRGSLSSYAYILMVLYFLQQRKPPVIPVL----QEIFDGKQIPQRMVDGWNAFFFDK
       . ..   :..::  :.:.:::: : :::.:..    :.  .:.:.    ::::.  :   
mFLJ00 SGGG-PLLNNYALTLLVIYFLQTRDPPVLPTVAQLTQRAGEGEQVE---VDGWDCSFPKD
        430        440       450       460       470          480  

       1100      1110      1120        1130      1140          1150
mKIAA0 TEELKKRLPSLGKNTESLGELWLGLLRFYT--EEFDFKEYVISIRQKKLLTTFE----KQ
       . .:.   ::   :.: :. :   : .:..    .:..  ..:.:. . : . :      
mFLJ00 ASRLE---PST--NVEPLSSL---LAQFFSCVSCLDLSGSLLSLREGRPLMVAEGLPSDL
               490            500       510       520       530    

                1160      1170      1180      1190      1200       
mKIAA0 WTSKCIA---IEDPFDLNHNLGAGVSRKMTNFIMKAFINGRKLFGTPFYPLIGREAEYFF
       : .  ..   ..:::::.::..:.:. ...                              
mFLJ00 WEGLRLGPMNLQDPFDLSHNVAANVTGRVAKRLQSCCGAAASYCRSLQYQQRSSRGRDWG
          540       550       560       570       580       590    




1556 residues in 1 query   sequences
1767461 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:14:12 2006 done: Mon Mar 27 10:14:13 2006
 Scan time:  1.220 Display time:  0.050

Function used was FASTA [version 3.4t11 Apr 17, 2002]