FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1792.ptfa, 772 aa vs ./tmplib.26680 library 1768245 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.1979+/-0.00398; mu= 18.6191+/- 0.267 mean_var=67.6919+/-15.532, 0's: 0 Z-trim: 2 B-trim: 56 in 1/35 Lambda= 0.1559 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1800 ( 493 res) mbr27022 ( 493) 162 46 1.4e-05 mKIAA0948 ( 655 res) mpj00976 ( 655) 131 39 0.0021 >>mKIAA1800 ( 493 res) mbr27022 (493 aa) initn: 291 init1: 144 opt: 162 Z-score: 192.6 bits: 45.8 E(): 1.4e-05 Smith-Waterman score: 241; 21.300% identity (26.637% ungapped) in 554 aa overlap (247-768:14-488) 220 230 240 250 260 270 mKIAA1 SILKAFVDLRIPPSLSMLDVYETRFCHQVWEMTLDQLLLVADLWRNLGRRVPRFFKIFFS :.. .: :.: ... : ...: . : mKIAA1 KKQLKSTILLLSEELSSQQALIVLGAMEDMESRNSHLLKKIVS 10 20 30 40 280 290 300 310 320 330 mKIAA1 YLNLHWRELSLSQLIHLIYIIGENRQVPQDLMQRLESLILKYVD-SVNLEEVGTIC--LG : : . . .:...: . . ..:...:. :.:. .. :: :.... :. mKIAA1 VLYKHLDNYKSIELLKIIQALTFLHFQSKELFMKLRELLLSRLEASVIPSEISVLVSALS 50 60 70 80 90 100 340 350 360 370 mKIAA1 FFK----SSSSLS--EFVM-----RKIGDLACANMQHLSSHTLVHIL-----KMFRFTHV .. : ...: : :. :...::. :. ..: :: . .. . .. mKIAA1 MLPHPHLSETAVSRIEAVLPQCDFRELNDLVVCLMRWIQSD-LVCLASTTGKQLDLLQKL 110 120 130 140 150 160 380 390 400 410 420 430 mKIAA1 DHI--HFMKQFG--EIAPQRIPSLGVQGVMHLTLACSALRILDERVMNAVAASLPPRVAH ::. : ..: .. ... :: . .: .:. .. : : :. . : .:. mKIAA1 DHLGRHRLQQSTNLDLLWEELKSLKGEW-LHESLVEESIAAL-LRFMDEIDYS---NIAK 170 180 190 200 210 440 450 460 470 480 490 mKIAA1 CRSKDVAKILWSFGTLNYKPPNTEEFYSSLINEIHRKMPEFNQYPEHLLTCLIGLAFSEY . .: :. :. ::: ::. .::... .. . . .. : :. ..:: :: mKIAA1 IHPFSVLAIILPFSILNYDPPQKDEFFGACVQCCNSYLGTLD--PGTLVFLGFSLAVLEY 220 230 240 250 260 270 500 510 520 530 540 mKIAA1 FPVEFINVALSPGFVKLAQERSKFELTK---------ELFTLDGTVAIECPDYKGNRLNS :: .... .. : ::. :..:. .:. :. .: .:::. . ... mKIAA1 FPEDLLKKMFNIEF--LARLDSQLEILPSSLSARIQFRLMELNRAVCLECPELQVPWFHD 280 290 300 310 320 330 550 560 570 580 590 600 mKIAA1 HLQQETSANLWNLASKDMRSKPEFLETLYLLETMLGGPQYIKHHMILPHTRSSDLEVQLD .. :. .: . : . . . .: .::: : .: . :. .. .: :: mKIAA1 RFCQRQ----FNKDTGVMNGAQQ--QIYKMLAEVLGGHQCVKPSALSPYYHTVGFECILD 340 350 360 370 380 610 620 630 640 650 660 mKIAA1 ANMKPMPFNSEATPTEDGAQLRFKQVGVSLTDDLMNQLLKGKAKRYFQGQIELETGQPPM ::.:..:.. . :..:. ......: : mKIAA1 KRKKPLPYESHSIAPR-------KSLGM-----------------HWDSRVE-----P-- 390 400 410 670 680 690 700 710 720 mKIAA1 ELRKKTTVPLVNSGCNGTDRLGDGMVGLCPLAHMQPPLVKLAIQFTNKNQYCYGSRALLG :: : : ..::.. . .: . : : mKIAA1 -------------------RL--------P-----PEAERIAIELLDVRAFCSNIPHLKG 420 430 440 730 740 750 760 770 mKIAA1 LHNMKRRQLVQIGYRVVELPHWEWLPLLKRTRLEKLAYLHEKVFTSAL ::.:.: .::::...:..:: . :. .. ::.:..: mKIAA1 KSAMKKRHLEILGYRVIQIPYFEWNSMAMSTKDARMDYLREHLFGEGKS 450 460 470 480 490 >>mKIAA0948 ( 655 res) mpj00976 (655 aa) initn: 150 init1: 94 opt: 131 Z-score: 153.5 bits: 38.9 E(): 0.0021 Smith-Waterman score: 214; 20.149% identity (21.907% ungapped) in 536 aa overlap (95-618:63-567) 70 80 90 100 110 120 mKIAA1 KVKNVGGTTLPRRTFTASSAHLGLEFNKASTLNASTLHPDSSSAGG--GEEDVEVFDSFE ::..:. :.:.: . :.: .:: . mKIAA0 RCTCLLREATRLVPTVAPVGRLRLAGVSCKTLTSSVSSPSSGSLAELLGKE--QVFTPY- 40 50 60 70 80 130 140 150 160 170 180 mKIAA1 GTRVFLKLRPEYQLHSYNRSDTHQPIAASEVELILHKVTFYQNKLQPEVITNYFYKLSSL ::.: .. . .: . .::. ....:. .. : :: mKIAA0 ---------PEHQELDFLIEKASRP--EQLLELLGSDHSLHHNH-AALILIRLSYLLSEK 90 100 110 120 130 190 200 210 220 230 240 mKIAA1 PAEQNSVLLSSNSFALLCQLSVKNIQLFNTSDLISILKAFVDLRIPPSLSMLDVYETRFC : :. ..: . : : .: ..: . :...:... : .: . :. : . mKIAA0 PKEK-ALLAEDARFQRLVKLVDSQITCVWHGTLVKLLRSLYTLVLPQISKELQSVEQEVR 140 150 160 170 180 190 250 260 270 280 290 mKIAA1 HQVWEMTLDQLLLVADLWRNLGR--RVPRFFKIFFSYLNLHWRELSLSQ-LIHLIYIIGE .. .. .:...:. .. . . ... .. .:. .: :.. :. :. .. . : mKIAA0 WRLRRLKYKHLVFLAESCASFMKEQHSQELLAELLMHLERRWTEINDSRTLVTMMTMAG- 200 210 220 230 240 250 300 310 320 330 340 350 mKIAA1 NRQVPQDLMQRLESLILKYVDSVNLEEVGTICLGFFKSSSSLSEFVMRKIGDLACANMQH .. ..::..::. :. :.. . .:. . : . ..: : ..: :. . mKIAA0 --HLSESLMNHLEDKCLELVEQFGPDELRKV-LVTLAAQSRRSVPLLRAISYHLVQKPFP 260 270 280 290 300 310 360 370 380 390 400 410 mKIAA1 LSSHTLVHILKMFRFTHVDHIHFMKQFG-EIAPQRIPSLGVQGVMHLTLACSALRILDER ... :. . . . . .... .. : :::. : . . . . :. :. mKIAA0 MTKGMLLDLAYAYGKLSFHQTQVSQRLAADLLP-FIPSMTPGEVARCAKSFAFLKWLNLP 320 330 340 350 360 370 420 430 440 450 460 470 mKIAA1 VMNAVAASLPPRVAHCRSKDVAKILWSFGTLNYKPPNTEEFYSSLINEIHRKM-PEFNQY ...: . : :: . : ..: .:. ::..: . :. . :.. :.:. : ... mKIAA0 LFEAFTQHLLSRVQDVSLSHVCSVLLAFARLNFHPEQEEDQFFSMV---HEKLDPVLGSL 380 390 400 410 420 480 490 500 510 520 530 mKIAA1 PEHLLTCLI-GLAFSEYFPVEFINVALSPGF-VKLAQERSKFELT--KELFTLDGTVAIE : . :. .: .. ....: ::. ... . .: . . ..: .. :. .: mKIAA0 EPALQVDLVWALCVLQHVHETELHTVLHPGLHARFLESKSPKDQSTFQKLVHINTTALLE 430 440 450 460 470 480 540 550 560 570 580 590 mKIAA1 CPDYKGNRLNSHLQQETSANLWNLASKDMRS-KPEFLETLYLLETMLGGPQYIKHHMILP :.::: : . : . . ..: : . :. ::: ...::. . . .. mKIAA0 HPEYKG----PFLPASAVAPIPSPSNKKMTPLQKELQETL---KALLGNTDKGSLEVATQ 490 500 510 520 530 540 600 610 620 630 640 650 mKIAA1 HTRSSDLEVQLDANMKPMPFNSEATPTEDGAQLRFKQVGVSLTDDLMNQLLKGKAKRYFQ . : :: :::. . .:. . ..: mKIAA0 YGWVLDAEVLLDADGHFLPLRNFVAPHLAQPVGNQPLPPGAKRIAFLRWEFPNFNSRSKD 550 560 570 580 590 600 772 residues in 1 query sequences 1768245 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:53:19 2006 done: Mon Mar 27 10:53:20 2006 Scan time: 0.900 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]