FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1929.ptfa, 668 aa
 vs ./tmplib.26680 library

1768349 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.3738+/-0.00516; mu= 14.0333+/- 0.344
 mean_var=122.7673+/-28.117, 0's: 0 Z-trim: 12  B-trim: 0 in 0/36
 Lambda= 0.1158

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1375  ( 909 res)   mpm05366                   ( 909)  302   62 2.8e-10
mKIAA0382  ( 1553 res)   mbg03948                  (1553)  175   41 0.00095


>>mKIAA1375  ( 909 res)   mpm05366                        (909 aa)
 initn: 193 init1: 133 opt: 302  Z-score: 276.9  bits: 62.0 E(): 2.8e-10
Smith-Waterman score: 367;  31.864% identity (35.338% ungapped) in 295 aa overlap (116-392:36-319)

          90       100       110       120        130       140    
mKIAA1 LELSYVNSNLQLLKEELAELSTSVDVDQPEGEGITIP-MIPLGLKETKELDWATPLKELI
                                     :...:.  .: . ::.:.:.: : :: ..:
mKIAA1 RRPVGPLLRCRCRARLGRGRCPSVCAARRGGRALTMASFIWVQLKKTSEVDLAKPLVKFI
          10        20        30        40        50        60     

             150       160         170       180       190         
mKIAA1 SEHF---GEDGTSFETEIQELEDLRQAT--RTPSRDEAGLDLLAAYYSQLCFLDARF-FS
       .. .   ::. ...    .::  ::...  :  .. :..:. :  ::.:.: .. .: ::
mKIAA1 QQTYPSGGEEQAQYCRAAEELSKLRRSALGRPLDKHEGALETLLRYYDQICSIEPKFPFS
          70        80        90       100       110       120     

      200       210              220       230       240       250 
mKIAA1 PSRSPGLLFHWYD-----SLTG--VPAQQRALAFEKGSVLFNIGALHTQIGARQDCSCTE
        ..   : : : :     :: :  :     .:..::. :::: .:: .::.:.:. .  :
mKIAA1 ENQI-CLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAALASQIAAEQNLDNDE
          130       140       150       160       170       180    

             260       270           280       290       300       
mKIAA1 GTNHAAEAFQRAAGAFRLLREN----FSHAPSPDMSAASLSMLEQLMIAQAQECIFKGLL
       : . ::. .: :.:::  ....    .:. :. :.:  ... :  .:.::::: .:    
mKIAA1 GLKTAAKQYQFASGAFLHIKDTVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFF----
          190       200       210       220       230       240    

       310       320       330       340       350       360       
mKIAA1 LPASATPDICPDQLQLAQEAAQVATEYGLVHRAMAQPPVRDYLPASWTNLAHVKAEHFCA
          .:: :   : . .:. : :.:  .:    :. :   .: ::        .:   . :
mKIAA1 --LKATRDKMKDAI-IAKLANQAADYFG---DAFKQCQYKDTLPKEVFPTLAAKQCIMQA
                250        260          270       280       290    

       370       380       390       400       410       420       
mKIAA1 LAHYHAAMALCESHPAKGELARQEHVFQPSTPHEPLGPTLPQHPEDRRKLAKAHLKRAIL
        :.:: ..   ...    :.:: .:.                                  
mKIAA1 NAEYHQSILAKQQKKFGEEIARLQHAAELIKNVASRYDEYVNVKDFSDKINRALTAAKKD
          300       310       320       330       340       350    

>>mKIAA0382  ( 1553 res)   mbg03948                       (1553 aa)
 initn: 169 init1: 169 opt: 175  Z-score: 159.6  bits: 41.1 E(): 0.00095
Smith-Waterman score: 175;  35.227% identity (36.905% ungapped) in 88 aa overlap (515-598:67-154)

          490       500       510       520           530       540
mKIAA1 THQTPEVRMPSLSQVKVTDFFHRLGPLSVFSTKNRWQLVGPVH----MTRGEGGFGFTLR
                                     : ..: .. : :.    . . ..:::.:. 
mKIAA0 SPTDKKQKVERSSSHDFDPTDSSSKKTKSSSEESRSEIYGLVQRCVIIQKDDNGFGLTVS
         40        50        60        70        80        90      

              550       560       570       580       590       600
mKIAA1 GDSPVLIAAVVPGGQAESAGLKEGDYIVSVNGQPCKWWKHLEVVTQLRSMGEEGVSLQVV
       ::.::.. .:   : :  ::.. :: :..:::      .:::::  .:: .  ....:  
mKIAA0 GDNPVFVQSVKEDGAAMRAGVQTGDRIIKVNGTLVTHSNHLEVVKLIRSGSYVALTVQGR
        100       110       120       130       140       150      

              610       620       630       640       650       660
mKIAA1 SLLPSPEPRGTGPRRAALLWNQRECGFETPMPTRTRPWPILGWSRKNKQGKTGSHPDPCT
                                                                   
mKIAA0 PPGSPQIPLADSEVEPSVTGHMSPIMTSPHSPGAAGNMERITSPVLVGEENNVVHNQKVE
        160       170       180       190       200       210      




668 residues in 1 query   sequences
1768349 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:56:05 2006 done: Mon Mar 27 10:56:06 2006
 Scan time:  0.820 Display time:  0.060

Function used was FASTA [version 3.4t11 Apr 17, 2002]