FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1786.ptfa, 405 aa
 vs ./tmplib.26680 library

1768612 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.1050+/-0.0039; mu= 17.6284+/- 0.261
 mean_var=71.2966+/-15.971, 0's: 0 Z-trim: 2  B-trim: 0 in 0/36
 Lambda= 0.1519

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1583  ( 1033 res)   mbh02738                  (1033)  239   62 2.3e-10


>>mKIAA1583  ( 1033 res)   mbh02738                       (1033 aa)
 initn: 329 init1: 115 opt: 239  Z-score: 278.4  bits: 61.8 E(): 2.3e-10
Smith-Waterman score: 520;  28.392% identity (32.102% ungapped) in 398 aa overlap (8-397:54-413)

                                      10        20        30       
mKIAA1                        LQRFSSLPAYLPAGFHVTDAEEAFFLKEANQDLMRNA
                                     : :::..... :: : : ......    :.
mKIAA1 PRGPYGAWFCLLVALALEVVRVSSNHDTLDPIYLPVALELLDAPEHFRVQQVGHYPPANS
            30        40        50        60        70        80   

        40        50          60        70        80        90     
mKIAA1 SLQARSATLFIHR--AQSPPAINASYGPFSVEKTVPWDFLLMPTPFGNMERFPFNWRLKS
       :: .:: :... .   .. : . ::: ::.....::   .  :      .: :  : ...
mKIAA1 SLASRSETFLLMQPWPRAQPLLRASYPPFATQQVVP-PRVTEP------HRRPVPWDVRA
            90       100       110        120             130      

         100       110       120       130       140       150     
mKIAA1 HILDSSIFSNRPKVQTLFYVTGMGWDENDPGDDLPCVKMFAFPEAREVAASCRLQGAPGL
         .....   .: ...::.. :. :  . ::. :::... :   :  .  .::.: . : 
mKIAA1 VSVEAAVTPAEPYARVLFHLKGQDWPPG-PGS-LPCARLHATHPAGTAHRACRFQPSLGA
        140       150       160         170       180       190    

         160       170       180       190       200        210    
mKIAA1 CVAELELLPEWFSSGLDLEPQEEIPALLGGTAMELYFALYPANEA-GQCPLEEEGKWENN
       ::.::..  .:::..             . :  :: ..: ::.:. : : :  :      
mKIAA1 CVVELQFPSHWFSQS-------------ATTRAELAYTLEPAGEGPGGCGLGTE------
          200                    210       220       230           

          220        230       240       250       260       270   
mKIAA1 IHSEQEEP-QPVLPARERIGSVVVYPTQDDLRWSLVTLDDNVALSIPLNLIREGDTATFL
            ::: . .::    .:.: ..: .:  ... : ::. :.:  :   .: :.  :  
mKIAA1 -----EEPREQALP----VGGVELHP-EDPPQYQEVPLDEAVTLRAPDVPMRPGQLFTAT
              240           250        260       270       280     

           280       290       300       310       320       330   
mKIAA1 VSLTSGSLAEKFTLRIKAAAGVKITAVRVSHEDQWAVQEEIEQDGTQTTAVLSCMGHHPD
       . :  .  :  .:::::.  :... :.: ..   :... .  . . . :....:    : 
mKIAA1 LLLRHNFTASLLTLRIKVKKGLQVIAARPAQPTLWTAKLDRFKGSKHHTSLITCHRAGPA
         290       300       310       320       330       340     

           340       350         360       370         380         
mKIAA1 TQSRANGSFYEILQVDFGVDNSS--SLAGAQQITWQVEYP--VEDSMSELFVSEIFISQT
         . .   . :.: :::.:.::.  ..: .. .:::.:::  . .. .. .: ::..:. 
mKIAA1 GPDSSPLELSEFLWVDFAVENSTGGGVAVTRPVTWQLEYPGQAPEAEKDKMVWEILVSER
         350       360       370       380       390       400     

     390       400                                                 
mKIAA1 TFVGIVPLTMVRKQGS                                            
        . ...::.                                                   
mKIAA1 DIRALIPLAKAEELVNTAPLTGVPQRIPVRLVTVDSGGALEEVTEHIGCESANTQVLQVS
         410       420       430       440       450       460     




405 residues in 1 query   sequences
1768612 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:53:09 2006 done: Mon Mar 27 10:53:10 2006
 Scan time:  0.610 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]