FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1154.ptfa, 488 aa
 vs ./tmplib.26680 library

1768529 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 7.9801+/-0.00605; mu= -1.1581+/- 0.401
 mean_var=195.9035+/-46.805, 0's: 0 Z-trim: 3  B-trim: 0 in 0/36
 Lambda= 0.0916

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0369  ( 791 res)   mbg01404                   ( 791)  374   62 1.9e-10


>>mKIAA0369  ( 791 res)   mbg01404                        (791 aa)
 initn: 275 init1: 121 opt: 374  Z-score: 280.0  bits: 61.9 E(): 1.9e-10
Smith-Waterman score: 377;  29.799% identity (32.602% ungapped) in 349 aa overlap (25-354:104-441)

                     10        20        30        40        50    
mKIAA1       PVECLRARRPAEKMNGPSSRSSHLSQPVVKSVLVYRNGDPFFAGRRVVIHEKKV
                                     :.  .:.:  ::::: .: :   .:   . 
mKIAA0 SRGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNGDRYFKGIVYAISPDRF
            80        90       100       110       120       130   

           60            70        80        90       100       110
mKIAA1 SSFDVFLKEVT----GGVQAPFGAVRNIYTPRTGHRIRKLDQIESGGNYVAGGPEAFKKL
        ::...: ..:     .:. : : ::.:::    ..: .:::.  : .:: :. : ::::
mKIAA0 RSFEALLADLTRTLSDNVNLPQG-VRTIYTIDGLKKISSLDQLVEGESYVCGSIEPFKKL
           140       150        160       170       180       190  

              120       130       140                 150       160
mKIAA1 NYLDIGEIKKRPMEAVNTEVKPVIHSRINVS----------ARFRKSLHEPCTIFLIANG
       .:      .  :  .::  :: .  ::   :          .:  :.. .:  . .: .:
mKIAA0 EYTK----NVNPNWSVN--VKTTSASRAVSSLATAKGGPSEVRENKDFIRPKLVTIIRSG
                200         210       220       230       240      

              170       180       190       200       210          
mKIAA1 DLISPASRLLIPKKALNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELE-NGQF
            : :.:. ::. .....::  .:. : : ::.:.:::::.:: :    ..  . ..
mKIAA0 VKPRKAVRILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLDGKQVMCLQDFFGDDDI
        250       260       270       280       290       300      

     220       230       240       250       260       270         
mKIAA1 YVAVGRDKFKRLPYSELLFDKSAMRRPYGQKASSLPPMVGSRKSKGSGNYRQSKSTIGSS
       ..: : .::.    ...:.:.:  :   . . ...        .:. :  :.:::  ..:
mKIAA0 FIACGPEKFRY--QDDFLLDESECRVVKSTSYTKIASASRRGTTKSPGPSRRSKSPASTS
        310         320       330       340       350       360    

     280           290       300       310       320       330     
mKIAA1 D-NSSPQ---PLKRKGKKDSNSEKPTKVKQSVKSKTSHQAIPDNGEGIFKAGAERSETRG
       . :..:       :.::. : :  ::.  .  :.. :...  ... .  :. .  .:. :
mKIAA0 SVNGTPGSQLSTPRSGKSPSPS--PTSPGSLRKQRISQHGGSSTSLSSTKVCSSMDENDG
          370       380         390       400       410       420  

         340       350       360       370       380       390     
mKIAA1 AAEVQEDEDTQVEVPVDQRPAEIVDEEEDGEKTSKDANQKEDFSAMNGETEDRGGSKAAG
        .: . .:  :. . . .:                                         
mKIAA0 PGEEESEEGFQIPATITERYKVGRTIGDGNFAVVKECIERSTAREYALKIIKKSKCRGKE
            430       440       450       460       470       480  




488 residues in 1 query   sequences
1768529 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:37:23 2006 done: Mon Mar 27 10:37:24 2006
 Scan time:  0.690 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]