FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1022.ptfa, 1128 aa vs ./tmplib.26680 library 1767889 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.4618+/-0.00845; mu= -5.5328+/- 0.560 mean_var=428.7041+/-105.537, 0's: 0 Z-trim: 5 B-trim: 0 in 0/36 Lambda= 0.0619 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1650 ( 856 res) mbg18106 ( 856) 502 60 2.1e-09 >>mKIAA1650 ( 856 res) mbg18106 (856 aa) initn: 1047 init1: 373 opt: 502 Z-score: 261.0 bits: 59.8 E(): 2.1e-09 Smith-Waterman score: 1380; 35.390% identity (41.709% ungapped) in 924 aa overlap (243-1125:29-853) 220 230 240 250 260 mKIAA1 ATRSDTVATMMREKGMFYRRELDRFSLDSEDVYSRSPA---PQAAFRTKRGQMPENPYSE :: .:: :. : : . :..::.. mKIAA1 PLGPLPYPERQKRARSMIILQDSAPEVGDVPRPAPAATPPERPKRRPRPSGPDSPYAN 10 20 30 40 50 270 280 290 300 310 320 mKIAA1 VGKIASKAVYVPAKPARRKGVLVKQSNVEDSPEKTCSIPIPTIIVKEPSTSSSGKSSQGS .: . : ....:.:: :::. :::: .:::. :.. .. : :. ... . . : mKIAA1 LGAF-SASLFAPSKPQRRKSPLVKQLQVEDAQERA------ALAVGSPGPVGGSFAREPS 60 70 80 90 100 110 330 340 350 360 370 380 mKIAA1 SMEIDPQATEPGQLRPDDSLTVSSPFAAAIAGAVRDREKRLEARRNSPAFLSTDLGDEDV . :. ::.: ... .. :.. : :..: ::: :: : .:::. . mKIAA1 PTHRGPR---PGSLDYSSGEGLGLTFGGPSPGPVKER--RLEERRRSTVFLSVGAIE--- 120 130 140 150 160 390 400 410 420 430 440 mKIAA1 GLGPPA--PRMQASKFPEEGGFGDEDETEQPLL-PTPGAAPRELENHFLGGGEAGAQGEA : : : : .: :. .: .: : . :: :.: .: . : . mKIAA1 GSPPSADLPSLQPSRSIDERLLGTGATTGRDLLLPSPVSALKPL---------------V 170 180 190 200 450 460 470 480 490 500 mKIAA1 GGPLSSTSKAKGPESGPAAPLKSSSPAGPENYVHPLTGRLLDPSSPLALALSARDRAMQE ::: : .:.: ...:::::. :::::::::::.::.::. mKIAA1 GGP-------------------SLGPSGS-TFIHPLTGKPLDPSSPLALALAARERALA- 210 220 230 240 510 520 530 540 550 mKIAA1 SQQGHKG----EAPKADLNKPLYIDTKMR-----PSVESGFPPVTRQNTRGPLRRQETEN :: .. ..: :: ::..:.. : : . .: : . : ::. . mKIAA1 SQTPSRSPTPVHSPDADRPGPLFVDVQTRDSERGPLASPAFSPRSPAWIPVPARREAEKP 250 260 270 280 290 300 560 570 580 590 600 610 mKIAA1 KYETDLGKDRRADDKKNMLINIVDTAQQKSAGLLMVHTVDVPMAGPPLEEEEDREDGDTK : . . .:::.:.....::. :. :::..::... . : ::.: mKIAA1 PRE----ERKSPEDKKSMILSVLDTSLQRPAGLIVVHATSNGQEPSRLGAEEERPG---T 310 320 330 340 350 360 620 630 640 650 660 670 mKIAA1 PDHSPSTVPEGVPKTEGALQISAAPEPAVAPGRTIVAAGSVEEA--VILPFRIPPPPLAS :. .:. : . . . : :. :. . :: :: ... .:: :.: mKIAA1 PELAPA--PMQAAAVAEPMPSPRAQPPGSIPADPGPGQGSSEEEPELVFAVNLPPAQLSS 370 380 390 400 410 680 690 700 710 720 730 mKIAA1 VDLD--EDFLFTEPLPPPLEFANSFDIPDDRAASVPALADLVKQKKNDTPQPPTLNSSQP : . :.. .::: ::::.. . ..: : : : .. : mKIAA1 SDEETREELARIGLVPPPEEFANGILL------TTPP------------PGPGPLPTTVP 420 430 440 450 460 740 750 760 770 780 790 mKIAA1 ANSTDSKKPAGISNCLPSSFLPP-PESFDAVTDSGIEEVDSRSSSDHHLETTSTISTVSS . ::. . ::: ::: ::: ..:::.::.:.::::: ::::::::::::: mKIAA1 S-------PASGK---PSSELPPAPES---AADSGVEEADTRSSSDPHLETTSTISTVSS 470 480 490 500 800 810 820 830 840 850 mKIAA1 ISTLSSEGGESMDTCTVYADGQAFVVDKPPVPPKPKMKPIVHKSNALYQDTLPEEDTDGF .::::::.:: :: : .:::..:...:::::::::.: . :. . ..: : ....:. mKIAA1 MSTLSSESGELTDTHTSFADGHTFLLEKPPVPPKPKLKSPLGKGPVTFRDPLLKQSSDSE 510 520 530 540 550 560 860 870 880 890 900 mKIAA1 VIPPPAPPPPPGSAQA-GVAK--VIQPRTSKLWGDVPEVKSPILSGP---KANVISELNS .. : :.: : :. . : :::::: : :.: : :: : .:::::.: mKIAA1 LMAQQHHAASTGLASAAGPARPRYLFQRRSKLWGD-P-VESRGLPGPEDDKPTVISELSS 570 580 590 600 610 620 910 920 930 940 950 960 mKIAA1 ILQQMNRG-KSVKPGEGLELPVGAKSANLAP--RSPEVMSTVSGTRSTTVTFTVRPGTSQ :::.:. .:. :: :::. .. : : .:: . . . .. . :.... . . mKIAA1 RLQQLNKDTRSL--GEE---PVGGLGSLLDPAKKSPIAAARLFSSLGELSTISAQRSPGG 630 640 650 660 670 680 970 980 990 1000 1010 mKIAA1 PITLQSRPPDYESRTSGPRRAPSPVVSPTELSK-EILPTPPPPSATA---ASPSPTLSDV : : .: ::::::: .:. : . : : . .. . :. :. mKIAA1 PGGGASYSVRPSGRYPVARRAPSPV-KPASLERVEGLGAGVGGAGRPFGLTPPTILKSSS 690 700 710 720 730 1020 1030 1040 1050 1060 1070 mKIAA1 FSLPSQSPAGDLFGLNPAGRSRSPSPSILQQPISN--------KPFTTKPVHLWTKPDVA .:.: . . . ..:::::::: : .: . .:: ::..::.: ::. mKIAA1 LSIPHEPKEVRFVVRSVSARSRSPSPSPLPSPSPGSGPSAGPRRPFQQKPLQLWSKFDVG 740 750 760 770 780 790 1080 1090 1100 1110 1120 mKIAA1 DWLESLNLGEHKETFMDNEIDGSHLPNLQKEDLIDLGVTRVGHRMNIERALKQLLDR :::::..::::.. : :.::.:.::: : :::...::::::::::::::::.:: mKIAA1 DWLESIHLGEHRDRFEDHEIEGAHLPALTKEDFVELGVTRVGHRMNIERALRQLDGS 800 810 820 830 840 850 1128 residues in 1 query sequences 1767889 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:34:14 2006 done: Mon Mar 27 10:34:15 2006 Scan time: 1.120 Display time: 0.090 Function used was FASTA [version 3.4t11 Apr 17, 2002]