FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1030.ptfa, 753 aa
 vs ./tmplib.26680 library

1768264 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 10.6501+/-0.00919; mu= -7.6021+/- 0.610
 mean_var=471.0175+/-113.591, 0's: 0 Z-trim: 12  B-trim: 20 in 1/35
 Lambda= 0.0591

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1355  ( 1189 res)   mpm05201                  (1189)  522   59 2.7e-09


>>mKIAA1355  ( 1189 res)   mpm05201                       (1189 aa)
 initn: 635 init1: 149 opt: 522  Z-score: 259.3  bits: 59.3 E(): 2.7e-09
Smith-Waterman score: 633;  31.716% identity (38.288% ungapped) in 536 aa overlap (3-509:590-1062)

                                           10        20        30  
mKIAA1                             TAYQFSVLAQNRLGTSAFSEVVTVNTLAFPVT
                                     :::::::::.::.. :::.:     ..:.:
mKIAA1 PDRAHHDWVSLAVPIGATHLLVPGLQAHAQYQFSVLAQNKLGSGPFSEIVLSIPEGLPTT
     560       570       580       590       600       610         

                       40        50        60        70        80  
mKIAA1 T----------PEPLVLVTPPRCLTANRTQQGVLLSWLPPANHSFPIDRYIMEFRVGER-
                  : ::   .::: :.: :: .:::: : ::      .: ::.: : : . 
mKIAA1 PAAPGLPPTEIPPPL---SPPRGLVAVRTPRGVLLHWDPPELIPGRLDGYILEGRQGSQG
     620       630          640       650       660       670      

              90       100       110       120       130           
mKIAA1 WEMLDDAIPGTDGDFFAKDLSQDTWYEFRVLAVMQDLISEPSNIAGVSST--DIFPQPDL
       ::.::... ::. ....  : .:. ::::..:  .. .:.:::.:..:..  ...:.   
mKIAA1 WEILDQGVAGTEIQLLVPGLIKDVLYEFRLVAFADSYVSDPSNVANISTSGLEVYPSRTQ
        680       690       700       710       720       730      

     140       150       160       170         180        190      
mKIAA1 TDDGLARPVLAGIVATICFLAAAILFSTLAACFVNKQR--KRKLKR-KKDPPLSITHCRK
           : .:::::.:. .:::..:.: : ::::..:..:  .:. :: ..:::: ..   :
mKIAA1 LPGLLPQPVLAGVVGGVCFLGVAVLVSILAACLMNRRRAARRHRKRLRQDPPLIFSPRGK
        740       750       760       770       780       790      

        200       210       220       230       240       250      
mKIAA1 SLESPLSSGKVSPESIRTLRAPSESSDDQGQPAAKRMLSPTREKELSLYKKTKRAISSRK
       :  :  . :. ::.:.  ..        ::.:.      :. .. : :. .  :  : . 
mKIAA1 S-GSHSAPGSGSPDSVTKFKL-------QGSPV------PSLRQSL-LWGEPARPPSPHP
         800       810              820              830       840 

        260       270       280       290       300        310     
mKIAA1 YSVAKAEAEAEATTPIELISRGPDGRFVMGPSEMEPSVKGRRIE-GFPFAEETDMYPEFR
        :       ...  :.: : :::::::::::. . :: .   .:   : .    .   : 
mKIAA1 DS-----PLGRGPLPLEPICRGPDGRFVMGPT-VAPSQEKLCLERPEPRTSAKRLAQSFD
                  850       860        870       880       890     

         320       330       340       350       360       370     
mKIAA1 QSDEENEDPLVPTSVAALKPQLTPMSSSQDSYLPPPAYSPRFQPRGLEGPSGLGGRLQAT
        :.        :  .. ..:   :...   : :: :.  : .:  .:  :  .  .... 
mKIAA1 CSSSSPSGVPQPLCITDISPVGQPLAAVP-SPLPGPG--PLLQYLSL--P--FFREMNVD
         900       910       920        930           940          

         380       390       400       410       420       430     
mKIAA1 GQARPPAPRPFQHGQYYGYLSSSSPGEVEPPPFYMPEVGSPLSSVMSSPPLHTEGPFGHP
       :.  ::  .:             .:.   ::: .:     : :: .  ::         :
mKIAA1 GDW-PPLEEP-------------TPA---PPPDFMDSQPCPTSSFL--PP---------P
      950                     960          970                  980

         440       450       460             470         480       
mKIAA1 TIPEENGENASNSTLPLTQTPTGGRSPEP------WGRPEFPFGGLET--PAMMFPHQLH
         :  : .    ..:: :   .:  :  :      :   :  . :: .  :   .  :  
mKIAA1 DSPPANLR----AVLPGTLMGVGVSSEPPYTALADWTLRERVLPGLLSAAPRGSLTSQSS
                  990      1000      1010      1020      1030      

       490       500           510       520       530       540   
mKIAA1 PCDVAESLQPKACLPRG----LPPAPLQVPAAYPGMLSLEAPKGWVGKSPGRGPIPAPPA
           :  :.: .  : .    : :::                                  
mKIAA1 GRGSASFLRPPSTAPSAGGSYLSPAPGDTSSWASGPERWPRREHVVTVSKRRNTSVDENY
       1040      1050      1060      1070      1080      1090      




753 residues in 1 query   sequences
1768264 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:34:28 2006 done: Mon Mar 27 10:34:29 2006
 Scan time:  0.890 Display time:  0.040

Function used was FASTA [version 3.4t11 Apr 17, 2002]