FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1348.ptfa, 539 aa
 vs ./tmplib.26680 library

1768478 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 4.2490+/-0.00403; mu= 17.9839+/- 0.270
 mean_var=78.0721+/-18.428, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.1452

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1157  ( 640 res)   mid29003                   ( 640)  148   41 0.00042


>>mKIAA1157  ( 640 res)   mid29003                        (640 aa)
 initn: 174 init1:  86 opt: 148  Z-score: 166.1  bits: 40.7 E(): 0.00042
Smith-Waterman score: 189;  24.760% identity (31.024% ungapped) in 416 aa overlap (77-449:216-590)

         50        60        70        80        90       100      
mKIAA1 RPFSPALASSALKCGSPPGGFALRKAYRHTSTEEEDFHLQLSPEQVSDLLRAGESSHKVL
                                     ::..::   : : : ..   .::  . .. 
mKIAA1 DHIARPILILKETRRLPWATGYAEVINAGKSTHNED---QASCEVLTVKKKAGTIT-STP
         190       200       210       220          230        240 

        110       120       130       140       150       160      
mKIAA1 DFNNGVPNSVLRFESNQLAANSPVEDRQGVATCVQTNGMMFGIFDGHGGHACAQAVSERL
       . :.   .:.   :. ::  ::  :   :. .:      ....::::.: . : ..:.  
mKIAA1 NRNSKRRSSLPNGEGRQLKENSESE---GI-SC-----HYWSLFDGHAGSGAAVVASR--
             250       260           270            280       290  

        170       180       190         200       210       220    
mKIAA1 FYYMAVSLMSHQTLEQMEEATENMK--PLLPILRWLKHPGDSIYKDVTSVHLDHLRVYWQ
              :..:.  .:... .: .:   .::     ..: ..  .  : ..   ::    
mKIAA1 -------LLQHHITQQLQDIVEILKNSAILPPTCLGEEPESTPAHGRTLTRAASLRG---
                     300       310       320       330       340   

          230       240       250       260       270              
mKIAA1 ELLDLHMEMGLSIEEALMYSFQRLDSDISLEIQAPLEDEVTRNLSLQV-----AFSGATA
           .    . :   . ... ...  .  : : : ::.   ....::.     :.. . .
mKIAA1 ---GVGAPGSPSTPPTRFFTEKKIPHE-CLVIGA-LESAF-KEMDLQIERERSAYNISGG
                 350       360        370         380       390    

     280          290       300       310       320       330      
mKIAA1 CMAHVNGV---HLHVANAGDCRAILGVQEENGAWSCLPLTCDHNAWNEAELSRLK-----
       : : .      .:.:::::: :::.    .::    .:.. . .   :.: .::.     
mKIAA1 CTALIVVCLLGKLYVANAGDSRAIII---RNGE--IIPMSSEFTP--ETERQRLQYLAFM
          400       410       420            430         440       

             340            350                 360           370  
mKIAA1 REHPESEDRTLI-----IDDRLLGVLMPCRAFG----------DVQLK----WSKELQRN
       . :  ... : .     .. . ::  :  : :.          : .::    ...  .  
mKIAA1 QPHLLGNEFTHLEFPRRVQRKELGKKMLYRDFNMTGWAYKTIEDDDLKFPLIYGEGKKAR
       450       460       470       480       490       500       

                 380       390       400       410           420   
mKIAA1 VLA-----RGFDTEALNIYQFTPPHYYTPPYLTAKPEVTYHRLRRQ----DKFLVLASDG
       :.:     ::.  . :....    . :  :.:.. :::  . : :     :  :.::.::
mKIAA1 VMATIGVTRGLGDHDLKVHD---SNIYIKPFLSSAPEVRVYDLSRYEHGADDVLILATDG
       510       520          530       540       550       560    

           430       440       450       460       470       480   
mKIAA1 LWDMLGNEDVVRLVVGHLSKVGRHKPDLDQRPANLGLMQSLLLQRKASGLHAADQNTATH
       :::.:.::.:.. ..  : .     :                                  
mKIAA1 LWDVLSNEEVAEAITQFLPNCDPDDPHRYTLAAQDLVMRARGVLKDRGWRISNDRLGSGD
          570       580       590       600       610       620    




539 residues in 1 query   sequences
1768478 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:41:52 2006 done: Mon Mar 27 10:41:53 2006
 Scan time:  0.750 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]