FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA0985.ptfa, 684 aa vs ./tmplib.26680 library 1768333 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 12.7866+/-0.0102; mu= -19.0165+/- 0.677 mean_var=599.9831+/-144.861, 0's: 0 Z-trim: 8 B-trim: 0 in 0/36 Lambda= 0.0524 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4194 ( 320 res) mbg12940 ( 320) 354 41 0.00019 mKIAA1342 ( 499 res) mid23032 ( 499) 298 37 0.0048 mKIAA0080 ( 353 res) mbh01670 ( 353) 283 36 0.0084 >>mKIAA4194 ( 320 res) mbg12940 (320 aa) initn: 506 init1: 296 opt: 354 Z-score: 172.2 bits: 41.2 E(): 0.00019 Smith-Waterman score: 560; 34.494% identity (37.979% ungapped) in 316 aa overlap (369-683:27-314) 340 350 360 370 380 390 mKIAA0 PAGGFQAAPHTAAPYSQAAPARQPPPAEEEEEEANSYDSDEATTLGALEFSLLYDQDNSN : :... . : .:: :.::: :: . .. mKIAA4 KGMKNAMNMKDMKGGQDDDDAETGLTEGEGEGEEEKEPENLGKLQFSLDYDFQANQ 10 20 30 40 50 400 410 420 430 440 450 mKIAA0 LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI : ...: : .: .: .:::::. ::: .:..: .::. :.: ::..:::. .. . mKIAA4 LTVGVLQAAELPALDMGGTSDPYVKVFLLP--DKKKKYETKVHRKTLNPAFNETFTFK-V 60 70 80 90 100 110 460 470 480 490 500 510 mKIAA0 TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVIPMKRAGTT ... ::: ... : :.:.....:::.. .. . .: :... mKIAA4 PYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQ------------PIEEW--- 120 130 140 150 520 530 540 550 560 570 mKIAA0 GSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDP : . :.:. :..::: .:: : : : : :.. .: ::..: ::: mKIAA4 ---RDLQGGEKEEPEKLGDI------CTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDP 160 170 180 190 200 580 590 600 610 620 630 mKIAA0 FVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYD-IGKS .::. : . . :.:: .::::::: ::: : ..: .. : .. ..: ::: .:: mKIAA4 YVKIHLMQNGKRLKKKKTTVKKKTLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGK- 210 220 230 240 250 260 640 650 660 670 680 mKIAA0 NDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD :. :: .: .: : .:.:: . : : . : .::.:. :..:.. mKIAA4 NEAIGKIFVGSNATGTELRHWSDMLANPRRPIAQWHSLKPEEEVDALLGKNK 270 280 290 300 310 320 >>mKIAA1342 ( 499 res) mid23032 (499 aa) initn: 493 init1: 293 opt: 298 Z-score: 147.0 bits: 37.2 E(): 0.0048 Smith-Waterman score: 498; 31.250% identity (34.921% ungapped) in 352 aa overlap (335-675:171-496) 310 320 330 340 350 360 mKIAA0 TPGPGRFPEQSTEAPPSDPGYPGAVAPAREERTGPAGGFQAAPHTAAPYSQAAPARQPPP :. :.: : :. :. . : mKIAA1 LSSKKKFGGDDKSEVKGKAALPNLSLHLDLEKRDLNGNFPKANPKAGSSSDLENVT-PKL 150 160 170 180 190 370 380 390 400 410 mKIAA0 AEEEEEEANSYDSDEATT----------LGALEFSLLYDQDNSNLQCTIIRAKGLKPMDS : :.:::: .: ...: ::.: .:: :. ... . .: .:.:: :: mKIAA1 FTETEKEANSPESLKSSTSLTSEEKQEKLGTLFLSLEYNFEKKAFVVNIKEAQGLPAMDE 200 210 220 230 240 250 420 430 440 450 460 470 mKIAA0 NGL-ADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVC ... .:::.:. .:: :.....:..::.: .::..::. ..:: .:. .:...: mKIAA1 QSMTSDPYIKMTILP--EKKHRVKTRVLRKTLDPVFDETFTFYGIPYPHIQELSLHFTVL 260 270 280 290 300 310 480 490 500 510 520 530 mKIAA0 DEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVE . :.:.... :::. . :. .. .. : . . : : .:: . .:.:: mKIAA1 SFDRFSRDDVIGEVLIPLSGIELSDGK---MLMTREI-IKRNAKKSSGRG---------- 320 330 340 350 360 540 550 560 570 580 590 mKIAA0 RIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAK ..:::: :.. . : : ... :: :..: :::.::. : . .: mKIAA1 ---------ELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISK 370 380 390 400 410 600 610 620 630 640 650 mKIAA0 HKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE .::..:: : : ::: : .:: .: . :... : : . :. :. :: :: .:.: mKIAA1 KKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGS 420 430 440 450 460 470 660 670 680 mKIAA0 RLKHWYECLKNKDKKIERWHQLQNENHVSSD :: : ..: .::.: mKIAA1 GGGHWKEICDFPRRQIAKWHMLCDG 480 490 >>mKIAA0080 ( 353 res) mbh01670 (353 aa) initn: 448 init1: 148 opt: 283 Z-score: 142.7 bits: 35.9 E(): 0.0084 Smith-Waterman score: 452; 31.269% identity (34.708% ungapped) in 323 aa overlap (357-675:56-350) 330 340 350 360 370 380 mKIAA0 GAVAPAREERTGPAGGFQAAPHTAAPYSQAAPARQPPPAEEEEEEANSYDSDEATTLGAL .: . :.: . .: . : . ::.: mKIAA0 LSHDKDPRGPSPASCMDQLPIKRDYGEELRSPMTSLTPGESKATSPSSPEED--VMLGSL 30 40 50 60 70 80 390 400 410 420 430 440 mKIAA0 EFSLLYDQDNSNLQCTIIRAKGLKPMD--SNGLADPYVKLHLLPGASKSNKLRTKTLRNT ::. :. .. : :: .:.:: :: ..: .:::.:. .:: .: ....:..::.: mKIAA0 TFSVDYNFPKKALVVTIQEAHGLPVMDDQTQG-SDPYIKMTILP--DKRHRVKTRVLRKT 90 100 110 120 130 140 450 460 470 480 490 500 mKIAA0 RNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNI .::..::. .. : ..: .:.. : . :.:.... :::. mKIAA0 LDPVFDETFTFYVIPYSQLQDLVLHFLVLSFDRFSRDDVIGEV----------------- 150 160 170 180 510 520 530 540 550 560 mKIAA0 CLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRC ..:. ::. :. . : .. . : ::.. ::: :. . : ... mKIAA0 ----MVPL--AGVDPSTGKVQLTRDIIKRNIQKCISRGELQVSLSYQPVAQRMTVVVLKA 190 200 210 220 230 570 580 590 600 610 620 mKIAA0 VHLAAMDANGYS-DPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKK :: :: .: : .:.::. . . ::.::..:: :::: ::: :.::: . : mKIAA0 RHLPKMDITGLSGNPYVKVNVYYGRKRIAKKKTHVKKCTLNPVFNESFIYDIPTDLLPDI 240 250 260 270 280 290 630 640 650 660 670 680 mKIAA0 SLDISVWDYDIGKSNDYIGGCQLGI-SAKGERLKHWYECLKNKDKKIERWHQLQNENHVS :... : :.: .:. .: :: :. .:: : .. : : .::.:. mKIAA0 SIEFLVIDFDRTTKNEVVGRLILGAHSVTTSGAEHWREVCESPRKPIAKWHSLSEY 300 310 320 330 340 350 mKIAA0 SD 684 residues in 1 query sequences 1768333 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:33:22 2006 done: Mon Mar 27 10:33:23 2006 Scan time: 0.850 Display time: 0.050 Function used was FASTA [version 3.4t11 Apr 17, 2002]