FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1237.ptfa, 650 aa vs ./tmplib.26680 library 1768367 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 10.6279+/-0.00745; mu= -13.6057+/- 0.491 mean_var=337.8642+/-80.262, 0's: 0 Z-trim: 9 B-trim: 0 in 0/36 Lambda= 0.0698 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4141 ( 1593 res) mbg03129 (1593) 243 39 0.0048 mKIAA0811 ( 1654 res) mbg07446 (1654) 238 38 0.007 >>mKIAA4141 ( 1593 res) mbg03129 (1593 aa) initn: 218 init1: 186 opt: 243 Z-score: 147.0 bits: 38.8 E(): 0.0048 Smith-Waterman score: 254; 21.968% identity (24.679% ungapped) in 437 aa overlap (228-639:955-1368) 200 210 220 230 240 250 mKIAA1 RTTELGRAEESSPSHFLTPSSPQTTDVSTAEMLTSRYITFAAQS-TSQSPTALPPLTPVN :: . .: ... : :.: . . : mKIAA4 LYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCQGPMDITIQAKCN 930 940 950 960 970 980 260 270 280 290 300 310 mKIAA1 SCTVNPCLHDGKCIVDLTGRGYRCVCPPAWQGENCSVDVNECLSSPCPPLATCNNTQG-- : ::: .:: : : . :::.:: ...:..:.: .. :.:.:: .::. .: mKIAA4 PCLSNPCKNDGTCNNDPVDF-YRCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGEN 990 1000 1010 1020 1030 1040 320 330 340 350 360 370 mKIAA1 -SFTCRCPVGYQLEKGICNLVRTFVTEFKLKKTFLNTTAENHSNT--QELENEIAQT-LN .: : : :.. :. :. .. . ..: .. .:.. : .:. . :. mKIAA4 AGFWCTCADGFEGENCEVNIDDCEDNDCENNSTCVDGI-NNYTCLCPPEYTGELCEEKLD 1050 1060 1070 1080 1090 1100 380 390 400 410 420 430 mKIAA1 VCFSTLPGYIRTTAHVSREPSTVFISLKTTFALASNVTLFDLADRIQKYVNSCRSSAEVC : . : . . . . .. .. . : : :.:...:. mKIAA4 FCAQDLNPCQHDSKCILTPKGFKCDCTPGYIGEHCDIDFDDCQD------NKCKNGAHCT 1110 1120 1130 1140 1150 440 450 460 470 480 mKIAA1 QLLGSQRRVF---RAGSLCKRKSPECDKETSICTDLDGVALCQCKSGYFQFNKMDHSCRA . ... : .: .:. . : .:: : ..: :..: . .... mKIAA4 DAVNGYTCVCPEGYSGLFCEFSPPMVLPRTSPCDNFD------CQNGAQCIIRINEPICQ 1160 1170 1180 1190 1200 1210 490 500 510 520 530 540 mKIAA1 CEDGYRLENETCMSCPFGLGGLNCGNPYQLITVVIAAAGGGLLLILGVALI----VTCCR : :: .: : . : ..: : . . . : . . : .: . . mKIAA4 CLPGYL--GEKCEK----LVSVNFVNKESYLQIPSAKVRPQTNITLQIATDEDSGILLYK 1220 1230 1240 1250 1260 550 560 570 580 590 mKIAA1 KSKNDISKLIFKSGDFQMSPYTDVPKNPRSQEWGREAIE---MH--ENGSTKNLLQMTDV .:. :. ... : . : : :. ..: : .. :.:. .: : . . :... mKIAA4 GDKDHIAVELYR-GRVRAS-Y-DTGSHPASAIYSVETINDGNFHIVELLTLDSSLSLSVD 1270 1280 1290 1300 1310 1320 600 610 620 630 640 650 mKIAA1 YYSPTNVRN--PELERNGLYPAYTG-LPGSRHSCIF---PGQYNPSFISDESRRRDYF :: . : . : : :.: .::. . . ::: . :: mKIAA4 GGSPKVITNLSKQSTLNFDSPLYVGGMPGKNNVASLRQAPGQNGTSFHGCIRNLYINSEL 1330 1340 1350 1360 1370 1380 mKIAA4 QDFRKMPMQTGILPGCEPCHKKVCAHGMCQPSSQSGFTCECEEGWMGPLCDQRTNDPCLG 1390 1400 1410 1420 1430 1440 >>mKIAA0811 ( 1654 res) mbg07446 (1654 aa) initn: 170 init1: 170 opt: 238 Z-score: 144.0 bits: 38.3 E(): 0.007 Smith-Waterman score: 238; 22.687% identity (24.281% ungapped) in 335 aa overlap (10-333:1005-1328) 10 20 30 mKIAA1 SQTTFPHPSSTLVPHRPRE-PRVTSVQMSTAISAIALI- .. . : .: . ...:: .:. .. mKIAA0 SLQPAEVTAGVDVLLAFEGHSGTSYDLQELASAIAHSAKEMEHSVGIQMRSALPVVPCQG 980 990 1000 1010 1020 1030 40 50 60 70 80 90 mKIAA1 PS--NQTANPKNQSTPQQEKPITEAKSPSLVSPPTDSTKAVTVSLPPGAPWSPALTGFST :: .:: . . :. . :. :...: : . . :. : . .. mKIAA0 PSCQDQTCQETVSLEPRVGPSYSTARL-SILTPRHHLGKNCSCN---GTTWRFSGQSYMR 1040 1050 1060 1070 1080 1090 100 110 120 130 140 150 mKIAA1 GPALPATSTS----LAQMSP-ALTSAMPQTTHSPVTSPSTLSHVEALTSGAVVVHTTPKK : : . . : ..: :: .:. . . . :.: :. . . mKIAA0 YRPLEAQNWQIHFYLKTLQPWALLMFTNETASISLKLANGFLHLEYRCPGGFYGNLSS-- 1100 1110 1120 1130 1140 160 170 180 190 200 210 mKIAA1 PHLPTNPEILVPHISTEGAITTEGNREHTDPTTQPIPLTTSTTSAGERTTELGRAEESSP : :.: . : ... . :: :. :: . . :: :: :.: mKIAA0 -HRPVNDGQWHSMLLEERDTSVHLLVDITDNTSLVIPEECQGLRT-ERHLLLGGLVPSNP 1150 1160 1170 1180 1190 1200 220 230 240 250 260 mKIAA1 SHFLTPSSPQTTDVSTAEMLTSRYITFAAQSTSQSPT-ALPPLT-PVNSCTVNPCLHDGK : .. . :. ... . . . .. : :: : ..:. ::::. :. mKIAA0 SSNVSLGFEGCLDAVVVNSERLELLGHRKKMAGYLETWALSQCCWPGTTCSQNPCLNGGS 1210 1220 1230 1240 1250 1260 270 280 290 300 310 320 mKIAA1 CIVDLTGRGYRCVCPPAWQGENCSVDVNECLSSPCPPLATCNNTQGSFTCRCPVGYQLEK : : : :: : ::: ..:.:: . ..: :.:: .:: .. . .: :: : .. mKIAA0 CSPAL-GSGYLCRCPPLFSGRNCELGRENCTSAPCQEGGTCVSSPEGTSCSCPHPYTGDR 1270 1280 1290 1300 1310 1320 330 340 350 360 370 380 mKIAA1 GICNLVRTFVTEFKLKKTFLNTTAENHSNTQELENEIAQTLNVCFSTLPGYIRTTAHVSR :.. mKIAA0 --CEMEARGCSGGHCLITPEIKRGDWGQQEFLVIIVALPLLIIATVGLLLYCRRCKSHKP 1330 1340 1350 1360 1370 1380 650 residues in 1 query sequences 1768367 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:39:01 2006 done: Mon Mar 27 10:39:02 2006 Scan time: 0.810 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]