FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1051.ptfa, 549 aa
 vs ./tmplib.26680 library

1768468 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 10.2208+/-0.00601; mu= -9.7459+/- 0.396
 mean_var=285.9010+/-69.539, 0's: 0 Z-trim: 1  B-trim: 20 in 1/35
 Lambda= 0.0759

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA2001  ( 745 res)   mfj36052                   ( 745)  320   48 2.8e-06


>>mKIAA2001  ( 745 res)   mfj36052                        (745 aa)
 initn: 385 init1: 265 opt: 320  Z-score: 205.0  bits: 48.2 E(): 2.8e-06
Smith-Waterman score: 329;  28.622% identity (32.927% ungapped) in 283 aa overlap (170-433:256-520)

     140       150       160       170       180         190       
mKIAA1 DINNFDEDMNRQFENMNLLDQVELLAQSYSLLDHLDDFDDDDEDDD--FDPEPDQDEL--
                                     :.. ..:. . : ..:  ..: :.: ::  
mKIAA2 PEEEEEEEEEVPFLCWPPPRTDPEYVSDDLLINVVQDYTNPDGSSDPPLSPSPSQPELHS
         230       240       250       260       270       280     

         200       210       220       230       240       250     
mKIAA1 PEYSDDDDLELQGAAAAPIPNFFSDDDCLEDLPEKFDGNPDMLGPFMYQCQLFMEKSTRD
       :  ..            :  .:.       :. : :.:.: .:. :..: . :.      
mKIAA2 PMLKE------------PTFEFLLPPLERPDI-EPFSGDPVYLAEFLMQLETFIADHEDH
         290                   300        310       320       330  

         260       270       280       290       300       310     
mKIAA1 FSVDRIRVCFVTSMLIGRAARWATAKLQRCTYLMHNYTAFMMELKHVFEDPQRREAAKRK
       :     :: :. :.. :.:  :: .  :. . :  :.  :. :... :  :   ..::. 
mKIAA2 FPGGAERVAFLISFFTGEARDWAISVTQEGSSLHANFPRFLDEIRKEFCGPIPSRVAKKA
            340       350       360       370       380       390  

         320       330       340       350       360       370     
mKIAA1 IRRLRQGPGPVVDYSNAFQMIAQDLDWTEPALMDQFQEGLNPDIRAELSRQEAPKTLAAL
       ::.:.::   . .:..:::..:: :.: .  :..:: .::.  .: ::  .     :  :
mKIAA2 IRKLKQGNCTLGSYADAFQFLAQFLSWDDCRLQNQFLKGLSEIFRKELLWSTEVADLDEL
            400       410       420       430       440       450  

         380         390          400       410                 420
mKIAA1 ITACIHIER--RLARDAA---AKPDPSPRALVMPPNSQTDPT----------EPVGGARM
       :  :..:::  :. . :.   .. .  : ::. : ..... .          : .:: :.
mKIAA2 ILECVKIERKVRVPKTASLTGVQNSCCPFALI-PNEDENEGVEFYSENEGEGEEAGGYRL
            460       470       480        490       500       510 

              430       440       450       460       470       480
mKIAA1 RLSKEEKERRRKMNLCLYCGNGGHFADGPSATGPERIRSPPSEASTQHLQVMLQIHMPGR
        :    :..:..:.                                              
mKIAA2 YL----KDQRQHMTAFPQEMREEEEEMRKEEDEMEDEEDEDEDEDYEFEEEDEDDDDEEE
                 520       530       540       550       560       




549 residues in 1 query   sequences
1768468 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:34:51 2006 done: Mon Mar 27 10:34:51 2006
 Scan time:  0.750 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]