FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA0759.ptfa, 166 aa
 vs ./tmplib.26680 library

1768851 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 3.8181+/-0.00378; mu= 14.6872+/- 0.254
 mean_var=63.2165+/-14.370, 0's: 0 Z-trim: 2  B-trim: 3 in 1/35
 Lambda= 0.1613

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 36, opt: 24, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA1194  ( 376 res)   mbj00606                   ( 376)  119   36  0.0023


>>mKIAA1194  ( 376 res)   mbj00606                        (376 aa)
 initn: 230 init1:  99 opt: 119  Z-score: 152.7  bits: 35.8 E(): 0.0023
Smith-Waterman score: 257;  30.198% identity (36.970% ungapped) in 202 aa overlap (2-166:34-235)

                                            10        20        30 
mKIAA0                              ILNWNYRFANLMQEFQHWDPDILCLQEVQED
                                     :::.::   ..::.   . ::. ::::. .
mKIAA1 PTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADIISLQEVETE
            10        20        30        40        50        60   

              40        50                 60        70        80  
mKIAA0 HYWEQLEPSLRMMGFTCFYKRRTGCKT---------DGCAVCYKPTRFRLLCASPVEYFR
       .:.  .   :.  :.. :.. ..  .:         ::::. .:  .: :.    ::. .
mKIAA1 QYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQ
            70        80        90       100       110       120   

                    90           100          110           120    
mKIAA0 ------PGLE-LLNR----DNVGLVLLLQ---PLVPEGLGQVSVAP----LCVANTHVLY
              : : .:::    ::.:...::.    :.  . :.  ..     . :::.:. .
mKIAA1 LAMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLGTEKQLILVANAHMHW
           130       140       150       160       170       180   

          130       140           150             160              
mKIAA0 NPRRGDVKLAQMAILLAEV----DKVARLSDGS---HC---PIILCGAATQL        
       .:. .::::.:  ..:.::    ::..:   .:   .:   :..::.  ..:        
mKIAA1 DPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPDSGVVEY
           190       200       210       220       230       240   

mKIAA1 LSTGGVETNHKDFKELRYNESLTNFSCNGKNGMTNGRITHGFKLKSAYENGLMPYTNYTF
           250       260       270       280       290       300   




166 residues in 1 query   sequences
1768851 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:28:04 2006 done: Mon Mar 27 10:28:04 2006
 Scan time:  0.380 Display time:  0.000

Function used was FASTA [version 3.4t11 Apr 17, 2002]