FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1343.ptfa, 395 aa
 vs ./tmplib.26680 library

1768622 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 10.4478+/-0.00868; mu= -9.4569+/- 0.576
 mean_var=454.5076+/-111.166, 0's: 0 Z-trim: 4  B-trim: 0 in 0/36
 Lambda= 0.0602

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mKIAA0071  ( 316 res)   mbg01793                   ( 316)  617   67 1.9e-12


>>mKIAA0071  ( 316 res)   mbg01793                        (316 aa)
 initn: 911 init1: 542 opt: 617  Z-score: 315.6  bits: 66.9 E(): 1.9e-12
Smith-Waterman score: 909;  62.673% identity (65.700% ungapped) in 217 aa overlap (65-281:1-207)

           40        50        60        70        80        90    
mKIAA1 YHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDK
                                     ::::::::::::::::::::::::::::::
mKIAA0                               LFWHKHNIEKSLADLPNFTPFPDEWTVEDK
                                             10        20        30

          100       110       120       130       140       150    
mKIAA1 VLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQG
       ::::::::::::.:::::::::::.::::::.::::::::..::.:::.:::  ..... 
mKIAA0 VLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFYYSWKKTRTKTSVMDRHARK--QKRERE
               40        50        60        70        80          

          160       170       180       190       200       210    
mKIAA1 DSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHSQRSK
       .:.:..::..  .  : . ::.::.:.:     :..:  .   ..: .: : .....:  
mKIAA0 ESEDELEETNGSNPVDIEIDPNKESKKEV---PPTET--VPQVKKEKHSTQAKNRAKR--
       90       100       110          120         130       140   

          220       230       240       250       260       270    
mKIAA1 CRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGI
        .:::::.:.:::: ::: . .::.:.::::::::.:.:::.:: ::.:::::.:..:::
mKIAA0 -KPPKGMFLSQEDVEAVSANATAATTVLRQLDMELVSIKRQIQNIKQTNSALKEKLDGGI
              150       160       170       180       190       200

          280       290       300       310       320       330    
mKIAA1 EEFKPPEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPP
       : .. ::.                                                    
mKIAA0 EPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR
              210       220       230       240       250       260




395 residues in 1 query   sequences
1768622 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:41:43 2006 done: Mon Mar 27 10:41:44 2006
 Scan time:  0.580 Display time:  0.010

Function used was FASTA [version 3.4t11 Apr 17, 2002]