# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbp04105.fasta.nr -Q ../query/mKIAA1343.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1343, 395 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7901050 sequences Expectation_n fit: rho(ln(x))= 6.8191+/-0.000205; mu= 3.7734+/- 0.011 mean_var=153.0191+/-28.925, 0's: 31 Z-trim: 69 B-trim: 0 in 0/68 Lambda= 0.103682 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|127799296|gb|AAH57141.2| REST corepressor 3 [Mu ( 395) 2729 419.6 5.9e-115 gi|148681021|gb|EDL12968.1| REST corepressor 3, is ( 399) 2729 419.6 6e-115 gi|90103521|sp|Q6PGA0.2|RCOR3_MOUSE RecName: Full= ( 451) 2729 419.7 6.5e-115 gi|149641517|ref|XP_001509399.1| PREDICTED: simila ( 704) 2622 403.9 5.8e-110 gi|148681022|gb|EDL12969.1| REST corepressor 3, is ( 555) 1920 298.8 2e-78 gi|55665699|emb|CAH72432.1| REST corepressor 3 [Ho ( 436) 1909 297.0 5.3e-78 gi|21595082|gb|AAH31608.1| RCOR3 protein [Homo sap ( 436) 1906 296.6 7.2e-78 gi|197246106|gb|AAI69033.1| Unknown (protein for M ( 551) 1903 296.2 1.2e-77 gi|114572472|ref|XP_001169808.1| PREDICTED: REST c ( 445) 1900 295.7 1.4e-77 gi|193785977|dbj|BAG54764.1| unnamed protein produ ( 449) 1900 295.7 1.4e-77 gi|90103520|sp|Q9P2K3.2|RCOR3_HUMAN RecName: Full= ( 495) 1900 295.7 1.5e-77 gi|76638157|ref|XP_611771.2| PREDICTED: similar to ( 495) 1900 295.7 1.5e-77 gi|109018384|ref|XP_001109084.1| PREDICTED: simila ( 495) 1900 295.7 1.5e-77 gi|114572468|ref|XP_514175.2| PREDICTED: REST core ( 549) 1900 295.8 1.6e-77 gi|194380264|dbj|BAG63899.1| unnamed protein produ ( 553) 1900 295.8 1.6e-77 gi|149708576|ref|XP_001489961.1| PREDICTED: REST c ( 497) 1894 294.8 2.8e-77 gi|224047174|ref|XP_002192117.1| PREDICTED: REST c ( 529) 1874 291.9 2.3e-76 gi|82233758|sp|Q5ZJ40.1|RCOR3_CHICK RecName: Full= ( 378) 1868 290.8 3.4e-76 gi|114572470|ref|XP_001169683.1| PREDICTED: REST c ( 549) 1862 290.1 8.2e-76 gi|149041058|gb|EDL95015.1| rCG20198 [Rattus norve ( 467) 1709 267.1 5.6e-69 gi|119613829|gb|EAW93423.1| REST corepressor 3 [Ho ( 467) 1706 266.7 7.7e-69 gi|194374913|dbj|BAG62571.1| unnamed protein produ ( 374) 1624 254.3 3.2e-65 gi|94732879|emb|CAK04914.1| novel protein similar ( 547) 1608 252.1 2.2e-64 gi|73983296|ref|XP_867275.1| PREDICTED: similar to ( 525) 1211 192.7 1.6e-46 gi|73983294|ref|XP_867262.1| PREDICTED: similar to ( 532) 1202 191.3 4.2e-46 gi|76657519|ref|XP_615207.2| PREDICTED: similar to ( 523) 1199 190.9 5.6e-46 gi|82237424|sp|Q6P116.1|RCOR2_DANRE RecName: Full= ( 536) 1195 190.3 8.7e-46 gi|73983292|ref|XP_540889.2| PREDICTED: similar to ( 523) 1193 190.0 1.1e-45 gi|109105867|ref|XP_001118333.1| PREDICTED: simila ( 406) 1189 189.3 1.3e-45 gi|119594587|gb|EAW74181.1| REST corepressor 2, is ( 423) 1189 189.3 1.4e-45 gi|23958561|gb|AAH23587.1| REST corepressor 2 [Hom ( 523) 1189 189.4 1.6e-45 gi|147744586|sp|Q8IZ40.2|RCOR2_HUMAN RecName: Full ( 523) 1189 189.4 1.6e-45 gi|8346962|emb|CAB93943.1| CoREST protein [Mus mus ( 479) 1188 189.2 1.7e-45 gi|148701350|gb|EDL33297.1| REST corepressor 2 [Mu ( 491) 1188 189.2 1.7e-45 gi|81909674|sp|Q5FWT8.1|RCOR2_RAT RecName: Full=RE ( 523) 1188 189.2 1.8e-45 gi|81914092|sp|Q8C796.1|RCOR2_MOUSE RecName: Full= ( 523) 1188 189.2 1.8e-45 gi|210123384|gb|EEA71085.1| hypothetical protein B ( 490) 1162 185.3 2.5e-44 gi|112419377|gb|AAI22024.1| Rcor3 protein [Xenopus ( 456) 1148 183.2 1e-43 gi|194218370|ref|XP_001488709.2| PREDICTED: simila ( 523) 1136 181.5 3.9e-43 gi|134023925|gb|AAI35878.1| Rcor2 protein [Xenopus ( 446) 1133 180.9 4.7e-43 gi|82237146|sp|Q6NRZ0.1|RCOR2_XENLA RecName: Full= ( 503) 1085 173.8 7.5e-41 gi|73960840|ref|XP_537141.2| PREDICTED: similar to ( 476) 1059 169.9 1.1e-39 gi|114638234|ref|XP_001162519.1| PREDICTED: REST c ( 517) 1052 168.9 2.3e-39 gi|66564701|ref|XP_392644.2| PREDICTED: similar to ( 419) 1013 163.0 1.1e-37 gi|149408631|ref|XP_001507641.1| PREDICTED: simila ( 450) 1013 163.0 1.2e-37 gi|47213388|emb|CAF93341.1| unnamed protein produc ( 498) 1010 162.6 1.8e-37 gi|149044102|gb|EDL97484.1| REST corepressor 1 (pr ( 501) 923 149.6 1.5e-33 gi|27503810|gb|AAH42731.1| REST corepressor 1 [Mus ( 382) 921 149.2 1.5e-33 gi|148686697|gb|EDL18644.1| REST corepressor 1, is ( 387) 921 149.2 1.5e-33 gi|148686698|gb|EDL18645.1| REST corepressor 1, is ( 408) 921 149.2 1.6e-33 >>gi|127799296|gb|AAH57141.2| REST corepressor 3 [Mus mu (395 aa) initn: 2729 init1: 2729 opt: 2729 Z-score: 2220.1 bits: 419.6 E(): 5.9e-115 Smith-Waterman score: 2729; 100.000% identity (100.000% similar) in 395 aa overlap (1-395:1-395) 10 20 30 40 50 60 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|127 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGYNVEQ 10 20 30 40 50 60 70 80 90 100 110 120 mKIAA1 ALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|127 ALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLPDKTI 70 80 90 100 110 120 130 140 150 160 170 180 mKIAA1 ASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEEAHPMDGNDSDYDPKKEAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|127 ASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEEAHPMDGNDSDYDPKKEAK 130 140 150 160 170 180 190 200 210 220 230 240 mKIAA1 REGNADQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|127 REGNADQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPNAANT 190 200 210 220 230 240 250 260 270 280 290 300 mKIAA1 ILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPEAQTPQAPRTLGPSPPAPSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|127 ILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPEAQTPQAPRTLGPSPPAPSS 250 260 270 280 290 300 310 320 330 340 350 360 mKIAA1 TPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPAN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|127 TPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLIRPAN 310 320 330 340 350 360 370 380 390 mKIAA1 SMPPRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH ::::::::::::::::::::::::::::::::::: gi|127 SMPPRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH 370 380 390 >>gi|148681021|gb|EDL12968.1| REST corepressor 3, isofor (399 aa) initn: 2729 init1: 2729 opt: 2729 Z-score: 2220.1 bits: 419.6 E(): 6e-115 Smith-Waterman score: 2729; 100.000% identity (100.000% similar) in 395 aa overlap (1-395:5-399) 10 20 30 40 50 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGY :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 ADVGMRVGAEYQARIPEFDPGATKYTDKDNGGMLVWSPYHSIPDAKLDEYIAIAKEKHGY 10 20 30 40 50 60 60 70 80 90 100 110 mKIAA1 NVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWTVEDKVLFEQAFSFHGKSFHRIQQMLP 70 80 90 100 110 120 120 130 140 150 160 170 mKIAA1 DKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEEAHPMDGNDSDYDPK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 DKTIASLVKYYYSWKKTRSRTSLMDRQARKLANRHNQGDSDDDVEEAHPMDGNDSDYDPK 130 140 150 160 170 180 180 190 200 210 220 230 mKIAA1 KEAKREGNADQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 KEAKREGNADQPVQTSKIGLGRREYQSLQHRHHSQRSKCRPPKGMYLTQEDVVAVSCSPN 190 200 210 220 230 240 240 250 260 270 280 290 mKIAA1 AANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPEAQTPQAPRTLGPSPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 AANTILRQLDMELISLKRQVQNAKQVNSALKQKMEGGIEEFKPPEAQTPQAPRTLGPSPP 250 260 270 280 290 300 300 310 320 330 340 350 mKIAA1 APSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 APSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQPPPPLI 310 320 330 340 350 360 360 370 380 390 mKIAA1 RPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH ::::::::::::::::::::::::::::::::::::::: gi|148 RPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH 370 380 390 >>gi|90103521|sp|Q6PGA0.2|RCOR3_MOUSE RecName: Full=REST (451 aa) initn: 2729 init1: 2729 opt: 2729 Z-score: 2219.4 bits: 419.7 E(): 6.5e-115 Smith-Waterman score: 2729; 100.000% identity (100.000% similar) in 395 aa overlap (1-395:57-451) 10 20 30 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGML :::::::::::::::::::::::::::::: gi|901 GGGGSSANGGLHFSEPESGCSSDDEHGDVGMRVGAEYQARIPEFDPGATKYTDKDNGGML 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM 270 280 290 300 310 320 280 290 300 310 320 330 mKIAA1 EGGIEEFKPPEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 EGGIEEFKPPEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHR 330 340 350 360 370 380 340 350 360 370 380 390 mKIAA1 QPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|901 QPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDS 390 400 410 420 430 440 mKIAA1 QPSLH ::::: gi|901 QPSLH 450 >>gi|149641517|ref|XP_001509399.1| PREDICTED: similar to (704 aa) initn: 2622 init1: 2622 opt: 2622 Z-score: 2130.4 bits: 403.9 E(): 5.8e-110 Smith-Waterman score: 2622; 95.190% identity (98.734% similar) in 395 aa overlap (1-395:310-704) 10 20 30 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGML :::::::::::::::::::::::::::::: gi|149 GKNPAGASNGLPFSEPESGGSSDDEHGDVGMRVGAEYQARIPEFDPGATKYTDKDNGGML 280 290 300 310 320 330 40 50 60 70 80 90 mKIAA1 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT ::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VWSPYHSIPDVKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT 340 350 360 370 380 390 100 110 120 130 140 150 mKIAA1 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|149 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR 400 410 420 430 440 450 160 170 180 190 200 210 mKIAA1 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS :::::::::::::::.::::::::::::::.:::..:::::::::::::::::::::::: gi|149 HNQGDSDDDVEEAHPVDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHS 460 470 480 490 500 510 220 230 240 250 260 270 mKIAA1 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM ::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::: gi|149 QRSKCRPPKGMYLTQEDVMAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM 520 530 540 550 560 570 280 290 300 310 320 330 mKIAA1 EGGIEEFKPPEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHR :::::::::::: :::: :.:: .::::.:::::..:.:::::::::::::::::::::: gi|149 EGGIEEFKPPEAPTPQATRSLGSTPPAPASTPTPAAPVATLNQPPPLLRPTLPAAPALHR 580 590 600 610 620 630 340 350 360 370 380 390 mKIAA1 QPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDS :::::::::::::::::::::::::::::: :::::::::::.:::::::::::::::.: gi|149 QPPPLQQQARFIQPRPTLNQPPPPLIRPANPMPPRLNPRPVLSTVGGQQPPSLIGIQTES 640 650 660 670 680 690 mKIAA1 QPSLH : ::: gi|149 QSSLH 700 >>gi|148681022|gb|EDL12969.1| REST corepressor 3, isofor (555 aa) initn: 1973 init1: 1920 opt: 1920 Z-score: 1564.2 bits: 298.8 E(): 2e-78 Smith-Waterman score: 2519; 79.798% identity (79.798% similar) in 495 aa overlap (1-395:61-555) 10 20 30 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGML :::::::::::::::::::::::::::::: gi|148 LESLCLALPLSSPYLLPFYHISWHCFADVGMRVGAEYQARIPEFDPGATKYTDKDNGGML 40 50 60 70 80 90 40 50 60 70 80 90 mKIAA1 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT 100 110 120 130 140 150 100 110 120 130 140 150 mKIAA1 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR 160 170 180 190 200 210 160 170 180 190 200 210 mKIAA1 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS 220 230 240 250 260 270 220 230 240 250 260 270 mKIAA1 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM 280 290 300 310 320 330 280 mKIAA1 EGGIEEFKPPE------------------------------------------------- ::::::::::: gi|148 EGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVN 340 350 360 370 380 390 290 mKIAA1 ---------------------------------------------------AQTPQAPRT ::::::::: gi|148 YRRRFNLEEVLQEWEAEQGTQASNADASALGEETQSASKVPSGKSTDEEAEAQTPQAPRT 400 410 420 430 440 450 300 310 320 330 340 350 mKIAA1 LGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQ 460 470 480 490 500 510 360 370 380 390 mKIAA1 PPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH ::::::::::::::::::::::::::::::::::::::::::::: gi|148 PPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH 520 530 540 550 >>gi|55665699|emb|CAH72432.1| REST corepressor 3 [Homo s (436 aa) initn: 1929 init1: 1900 opt: 1909 Z-score: 1556.7 bits: 297.0 E(): 5.3e-78 Smith-Waterman score: 1909; 86.527% identity (91.916% similar) in 334 aa overlap (1-332:59-390) 10 20 30 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGML :::::::::::::::::::::::::::::: gi|556 GGSGASSTNGGLHYSEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKDNGGML 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS ::::::::::::.:::::::::::::::::.:::..:::::::::::::::::::::::: gi|556 HNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHS 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|556 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM 270 280 290 300 310 320 280 290 300 310 320 mKIAA1 EGGIEEFKPPEA-QTPQAPRTLGPSPPAPSST-PTPTVPIATLNQPPPLLRPTLPAAPAL :::::::::::. : .: : . : ..: :: . ..... : . : .: gi|556 EGGIEEFKPPESNQKINARWTTEEQLLAVQGTDPTGSSDTGSITSCPIIHSNT--NSPYC 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA1 HRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQT : .: gi|556 HSEPASTTSSSNTACCPGSSPAASSTPAAGSVHPAPANFKSASTTSYSPC 390 400 410 420 430 >>gi|21595082|gb|AAH31608.1| RCOR3 protein [Homo sapiens (436 aa) initn: 1926 init1: 1897 opt: 1906 Z-score: 1554.3 bits: 296.6 E(): 7.2e-78 Smith-Waterman score: 1906; 86.228% identity (91.916% similar) in 334 aa overlap (1-332:59-390) 10 20 30 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGML :::::::::::::::::::::::::::::: gi|215 GGSGASSTNGGLHYSEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKDNGGML 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT :::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::: gi|215 VWSPYHSIPDARLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS ::::::::::::.:::::::::::::::::.:::..:::::::::::::::::::::::: gi|215 HNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHS 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|215 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM 270 280 290 300 310 320 280 290 300 310 320 mKIAA1 EGGIEEFKPPEA-QTPQAPRTLGPSPPAPSST-PTPTVPIATLNQPPPLLRPTLPAAPAL :::::::::::. : .: : . : ..: :: . ..... : . : .: gi|215 EGGIEEFKPPESNQKINARWTTEEQLLAVQGTDPTGSSDTGSITSCPIIHSNT--NSPYC 330 340 350 360 370 380 330 340 350 360 370 380 mKIAA1 HRQPPPLQQQARFIQPRPTLNQPPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQT : .: gi|215 HSEPASTTSSSNTACCPGSSPAASSTPAAGSVHPAPANFKSASTTSYSPC 390 400 410 420 430 >>gi|197246106|gb|AAI69033.1| Unknown (protein for MGC:1 (551 aa) initn: 1966 init1: 1903 opt: 1903 Z-score: 1550.5 bits: 296.2 E(): 1.2e-77 Smith-Waterman score: 2477; 78.182% identity (79.394% similar) in 495 aa overlap (1-395:57-551) 10 20 30 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGML :::::::::::::::::::::::::::::: gi|197 GGGGSSANGGLHFSEPESGCSSDDEHGDVGMRVGAEYQARIPEFDPGATKYTDKDNGGML 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT ::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::: gi|197 VWSPYHSIPDAKLDEYVAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|197 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS :::::::::::: :::::::::::::::::::::..:::::::::::::::::::::::: gi|197 HNQGDSDDDVEEPHPMDGNDSDYDPKKEAKREGNSEQPVQTSKIGLGRREYQSLQHRHHS 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|197 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM 270 280 290 300 310 320 280 mKIAA1 EGGIEEFKPPE------------------------------------------------- ::::::::::: gi|197 EGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVN 330 340 350 360 370 380 290 mKIAA1 ---------------------------------------------------AQTPQAPRT :::::.::: gi|197 YRRRFNLEEVLQEWEAEQGTQASNADTSALGEETKSASNVPSGKSTDEEEEAQTPQVPRT 390 400 410 420 430 440 300 310 320 330 340 350 mKIAA1 LGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTLNQ :::::::::::::::.::::::::::::::::::::::::::::::::::::::::: :: gi|197 LGPSPPAPSSTPTPTAPIATLNQPPPLLRPTLPAAPALHRQPPPLQQQARFIQPRPTPNQ 450 460 470 480 490 500 360 370 380 390 mKIAA1 PPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTDSQPSLH ::::::::::::::::::::::::::::::::::::::.:::::: gi|197 PPPPLIRPANSMPPRLNPRPVLTTVGGQQPPSLIGIQTESQPSLH 510 520 530 540 550 >>gi|114572472|ref|XP_001169808.1| PREDICTED: REST corep (445 aa) initn: 1924 init1: 1900 opt: 1900 Z-score: 1549.3 bits: 295.7 E(): 1.4e-77 Smith-Waterman score: 1900; 98.227% identity (100.000% similar) in 282 aa overlap (1-282:55-336) 10 20 30 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGML :::::::::::::::::::::::::::::: gi|114 GGSGASSTNGGLHYSEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKDNGGML 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS ::::::::::::.:::::::::::::::::.:::..:::::::::::::::::::::::: gi|114 HNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHS 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|114 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM 270 280 290 300 310 320 280 290 300 310 320 330 mKIAA1 EGGIEEFKPPEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHR :::::::::::. gi|114 EGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVN 330 340 350 360 370 380 >>gi|193785977|dbj|BAG54764.1| unnamed protein product [ (449 aa) initn: 1924 init1: 1900 opt: 1900 Z-score: 1549.2 bits: 295.7 E(): 1.4e-77 Smith-Waterman score: 1900; 98.227% identity (100.000% similar) in 282 aa overlap (1-282:59-340) 10 20 30 mKIAA1 MRVGAEYQARIPEFDPGATKYTDKDNGGML :::::::::::::::::::::::::::::: gi|193 GGSGASSTNGGLHYSEPESGCSSDDEHDVGMRVGAEYQARIPEFDPGATKYTDKDNGGML 30 40 50 60 70 80 40 50 60 70 80 90 mKIAA1 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 VWSPYHSIPDAKLDEYIAIAKEKHGYNVEQALGMLFWHKHNIEKSLADLPNFTPFPDEWT 90 100 110 120 130 140 100 110 120 130 140 150 mKIAA1 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 VEDKVLFEQAFSFHGKSFHRIQQMLPDKTIASLVKYYYSWKKTRSRTSLMDRQARKLANR 150 160 170 180 190 200 160 170 180 190 200 210 mKIAA1 HNQGDSDDDVEEAHPMDGNDSDYDPKKEAKREGNADQPVQTSKIGLGRREYQSLQHRHHS ::::::::::::.:::::::::::::::::.:::..:::::::::::::::::::::::: gi|193 HNQGDSDDDVEETHPMDGNDSDYDPKKEAKKEGNTEQPVQTSKIGLGRREYQSLQHRHHS 210 220 230 240 250 260 220 230 240 250 260 270 mKIAA1 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|193 QRSKCRPPKGMYLTQEDVVAVSCSPNAANTILRQLDMELISLKRQVQNAKQVNSALKQKM 270 280 290 300 310 320 280 290 300 310 320 330 mKIAA1 EGGIEEFKPPEAQTPQAPRTLGPSPPAPSSTPTPTVPIATLNQPPPLLRPTLPAAPALHR :::::::::::. gi|193 EGGIEEFKPPESNQKINARWTTEEQLLAVQGVRKYGKDFQAIADVIGNKTVGQVKNFFVN 330 340 350 360 370 380 395 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 20:21:53 2009 done: Fri Mar 13 20:28:09 2009 Total Scan time: 856.770 Total Display time: 0.100 Function used was FASTA [version 34.26.5 April 26, 2007]