# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbp03171.fasta.nr -Q ../query/mKIAA1325.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1325, 356 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919103 sequences Expectation_n fit: rho(ln(x))= 4.8717+/-0.000181; mu= 11.2640+/- 0.010 mean_var=66.3227+/-12.841, 0's: 36 Z-trim: 53 B-trim: 2 in 1/65 Lambda= 0.157486 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148703618|gb|EDL35565.1| Lrp2 binding protein, ( 367) 2399 553.8 2e-155 gi|81917011|sp|Q9D4C6.1|LR2BP_MOUSE RecName: Full= ( 346) 2335 539.2 4.6e-151 gi|149021412|gb|EDL78875.1| similar to low density ( 367) 2273 525.2 8.4e-147 gi|149021411|gb|EDL78874.1| similar to low density ( 346) 2233 516.1 4.4e-144 gi|81882380|sp|Q569C2.1|LR2BP_RAT RecName: Full=LR ( 346) 2226 514.5 1.3e-143 gi|149742772|ref|XP_001490987.1| PREDICTED: simila ( 348) 2046 473.6 2.7e-131 gi|119918083|ref|XP_616622.3| PREDICTED: similar t ( 348) 2039 472.0 8.1e-131 gi|109076354|ref|XP_001085019.1| PREDICTED: simila ( 348) 2036 471.3 1.3e-130 gi|166199159|sp|Q9P2M1.2|LR2BP_HUMAN RecName: Full ( 347) 2029 469.7 3.9e-130 gi|75075420|sp|Q4R3N2.1|LR2BP_MACFA RecName: Full= ( 348) 2027 469.3 5.4e-130 gi|73979482|ref|XP_848800.1| PREDICTED: similar to ( 348) 2022 468.1 1.2e-129 gi|52545649|emb|CAB82313.2| hypothetical protein [ ( 349) 2018 467.2 2.2e-129 gi|21410303|gb|AAH30908.1| Lrp2bp protein [Mus mus ( 292) 1976 457.6 1.4e-126 gi|73979484|ref|XP_532842.2| PREDICTED: similar to ( 322) 1865 432.4 6.1e-119 gi|119625054|gb|EAX04649.1| LRP2 binding protein, ( 321) 1849 428.8 7.6e-118 gi|126331245|ref|XP_001368974.1| PREDICTED: simila ( 347) 1798 417.2 2.5e-114 gi|114597252|ref|XP_526753.2| PREDICTED: similar t ( 282) 1540 358.5 9.3e-97 gi|82184767|sp|Q6IND7.1|LR2BP_XENLA RecName: Full= ( 341) 1323 309.3 7.5e-82 gi|165971190|gb|AAI58487.1| LOC100145071 protein [ ( 341) 1310 306.3 5.8e-81 gi|149413770|ref|XP_001517141.1| PREDICTED: hypoth ( 370) 1306 305.5 1.2e-80 gi|50746455|ref|XP_420505.1| PREDICTED: similar to ( 324) 1273 297.9 1.9e-78 gi|224049806|ref|XP_002190530.1| PREDICTED: simila ( 519) 1233 289.0 1.5e-75 gi|210105650|gb|EEA53657.1| hypothetical protein B ( 336) 1137 267.0 3.9e-69 gi|166199146|sp|A5PLI4.1|LR2BP_DANRE RecName: Full ( 343) 1075 253.0 6.9e-65 gi|26356292|dbj|BAC25168.1| unnamed protein produc ( 158) 1050 247.0 2e-63 gi|115934757|ref|XP_001183497.1| PREDICTED: simila ( 359) 1053 248.0 2.3e-63 gi|198428050|ref|XP_002123936.1| PREDICTED: simila ( 346) 1035 243.9 3.8e-62 gi|115758147|ref|XP_797245.2| PREDICTED: similar t ( 338) 1026 241.8 1.5e-61 gi|156221914|gb|EDO42764.1| predicted protein [Nem ( 346) 989 233.4 5.3e-59 gi|190582691|gb|EDV22763.1| hypothetical protein T ( 333) 965 228.0 2.2e-57 gi|74215783|dbj|BAE23427.1| unnamed protein produc ( 132) 902 213.3 2.3e-53 gi|221107788|ref|XP_002168803.1| PREDICTED: simila ( 157) 455 111.8 9.6e-23 gi|46399984|emb|CAF23433.1| conserved hypothetical ( 309) 278 71.8 2.1e-10 gi|126705085|gb|EBA04176.1| Sel1-like repeat prote ( 414) 279 72.2 2.2e-10 gi|156868432|gb|EDO61804.1| hypothetical protein C (1457) 272 71.0 1.7e-09 gi|195933112|gb|ACG57812.1| Sel1 domain protein re ( 343) 263 68.5 2.4e-09 gi|56542605|gb|AAV88759.1| conserved hypothetical ( 216) 256 66.7 5e-09 gi|154156500|gb|ABS63717.1| Sel1 domain protein re ( 357) 258 67.3 5.4e-09 gi|78172090|gb|ABB29186.1| Sel1-like repeat [Chlor ( 425) 253 66.3 1.4e-08 gi|46399989|emb|CAF23438.1| conserved hypothetical ( 445) 249 65.4 2.6e-08 gi|46399429|emb|CAF22878.1| conserved hypothetical ( 299) 247 64.8 2.7e-08 gi|198258027|gb|EDY82335.1| Sel1 repeat family [Ve ( 451) 249 65.4 2.7e-08 gi|46399985|emb|CAF23434.1| conserved hypothetical ( 379) 247 64.9 3.2e-08 gi|189497677|gb|ACE06224.1| hypothetical protein A ( 684) 248 65.3 4.3e-08 gi|221723713|gb|ACM26869.1| conserved hypothetical ( 393) 245 64.4 4.5e-08 gi|7225642|gb|AAF40857.1| conserved hypothetical p ( 198) 241 63.3 5e-08 gi|189497776|gb|ACE06323.1| hypothetical protein A (1039) 247 65.2 6.9e-08 gi|150028310|gb|ABR60427.1| Sel1 domain protein re ( 380) 242 63.7 7e-08 gi|150272794|gb|EDM99962.1| hypothetical protein B (1017) 246 65.0 8e-08 gi|167665636|gb|EDS09766.1| hypothetical protein A ( 922) 242 64.0 1.4e-07 >>gi|148703618|gb|EDL35565.1| Lrp2 binding protein, isof (367 aa) initn: 2399 init1: 2399 opt: 2399 Z-score: 2946.6 bits: 553.8 E(): 2e-155 Smith-Waterman score: 2399; 100.000% identity (100.000% similar) in 353 aa overlap (4-356:15-367) 10 20 30 40 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPFSLSQYAAKQQKFFQWKKEKPDYYLHA :::::::::::::::::::::::::::::::::::::::::::::: gi|148 MTSVPGSSERQHWPDPHCGDRMKLSSEKLPKNPFSLSQYAAKQQKFFQWKKEKPDYYLHA 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA1 NLVDTALQFLKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 NLVDTALQFLKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMY 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA1 YDGLGTIANAEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 YDGLGTIANAEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLW 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA1 LLAADNGNPKASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LLAADNGNPKASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYG 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA1 QGIRQDTDAALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QGIRQDTDAALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPM 250 260 270 280 290 300 290 300 310 320 330 340 mKIAA1 IAHVTDCLPEFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 IAHVTDCLPEFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHS 310 320 330 340 350 360 350 mKIAA1 LLIHQRI ::::::: gi|148 LLIHQRI >>gi|81917011|sp|Q9D4C6.1|LR2BP_MOUSE RecName: Full=LRP2 (346 aa) initn: 2335 init1: 2335 opt: 2335 Z-score: 2868.4 bits: 539.2 E(): 4.6e-151 Smith-Waterman score: 2335; 100.000% identity (100.000% similar) in 346 aa overlap (11-356:1-346) 10 20 30 40 50 60 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPFSLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQFLK :::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 MKLSSEKLPKNPFSLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQFLK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 ERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIANAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 ERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIANAE 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNPKA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 KGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNPKA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 SVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAAL 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 HCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 HCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEF 240 250 260 270 280 290 310 320 330 340 350 mKIAA1 IIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI :::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|819 IIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI 300 310 320 330 340 >>gi|149021412|gb|EDL78875.1| similar to low density lip (367 aa) initn: 2273 init1: 2273 opt: 2273 Z-score: 2791.9 bits: 525.2 E(): 8.4e-147 Smith-Waterman score: 2273; 94.051% identity (97.734% similar) in 353 aa overlap (4-356:15-367) 10 20 30 40 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPFSLSQYAAKQQKFFQWKKEKPDYYLHA ::.::. :::.::::::::::::::::::: :::::::::::: :: gi|149 MTSVPGSSARRNRSDPYCGNGMKLTSEKLPKNPFSLSQYAAKQQTFFQWKKEKPDYYRHA 10 20 30 40 50 60 50 60 70 80 90 100 mKIAA1 NLVDTALQFLKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMY :::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::: gi|149 NLVDTALQFLKERIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMY 70 80 90 100 110 120 110 120 130 140 150 160 mKIAA1 YDGLGTIANAEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLW ::::::.:.:::::.::.:::::::::::::::::::::::::::::::::::::::::: gi|149 YDGLGTVADAEKGVGYMKKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLW 130 140 150 160 170 180 170 180 190 200 210 220 mKIAA1 LLAADNGNPKASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYG : :::::::::::::::::::::::::::.:::::::::::::::.:::::::::::::: gi|149 LYAADNGNPKASVKAQSILGLFYSMKEPKDLEKAFFWHSEACGNGNLESQGALGLMYFYG 190 200 210 220 230 240 230 240 250 260 270 280 mKIAA1 QGIRQDTDAALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPM ::::::::::::::::::::::::::: :::::::::::::::::::::::::::::::: gi|149 QGIRQDTDAALHCLREAAERGNVYAQGILVEYYYKMKFFTKCVSFSKRIADYDEVHDIPM 250 260 270 280 290 300 290 300 310 320 330 340 mKIAA1 IAHVTDCLPEFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHS :::::::::::: ::::::.::..::::::::: ::: :::::::::::::::::::::: gi|149 IAHVTDCLPEFISKGMAMASFYYARCLQLGLGITKDEASAKHYYSKACRLNPTLADELHS 310 320 330 340 350 360 350 mKIAA1 LLIHQRI ::::::: gi|149 LLIHQRI >>gi|149021411|gb|EDL78874.1| similar to low density lip (346 aa) initn: 2233 init1: 2233 opt: 2233 Z-score: 2743.1 bits: 516.1 E(): 4.4e-144 Smith-Waterman score: 2233; 94.798% identity (97.977% similar) in 346 aa overlap (11-356:1-346) 10 20 30 40 50 60 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPFSLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQFLK :::.::::::::::::::::::: :::::::::::: ::::::::::::: gi|149 MKLTSEKLPKNPFSLSQYAAKQQTFFQWKKEKPDYYRHANLVDTALQFLK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 ERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIANAE ::::.::::::::::::::::::::::::::::::::::::::::::::::::::.:.:: gi|149 ERIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTVADAE 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNPKA :::.::.::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|149 KGVGYMKKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGNPKA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAAL ::::::::::::::::::.:::::::::::::::.::::::::::::::::::::::::: gi|149 SVKAQSILGLFYSMKEPKDLEKAFFWHSEACGNGNLESQGALGLMYFYGQGIRQDTDAAL 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 HCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEF :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|149 HCLREAAERGNVYAQGILVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEF 240 250 260 270 280 290 310 320 330 340 350 mKIAA1 IIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI : ::::::.::..::::::::: ::: ::::::::::::::::::::::::::::: gi|149 ISKGMAMASFYYARCLQLGLGITKDEASAKHYYSKACRLNPTLADELHSLLIHQRI 300 310 320 330 340 >>gi|81882380|sp|Q569C2.1|LR2BP_RAT RecName: Full=LRP2-b (346 aa) initn: 2226 init1: 2226 opt: 2226 Z-score: 2734.5 bits: 514.5 E(): 1.3e-143 Smith-Waterman score: 2226; 94.509% identity (97.977% similar) in 346 aa overlap (11-356:1-346) 10 20 30 40 50 60 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPFSLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQFLK :::.::::::::::::::::::: :::::::::::: ::::::::::::: gi|818 MKLTSEKLPKNPFSLSQYAAKQQTFFQWKKEKPDYYRHANLVDTALQFLK 10 20 30 40 50 70 80 90 100 110 120 mKIAA1 ERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIANAE ::::.::::::::::::::::::::::::::::::::::::::::::::::::::.:.:: gi|818 ERIRKGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTVADAE 60 70 80 90 100 110 130 140 150 160 170 180 mKIAA1 KGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNPKA :::.::.::::::::::::::::::::::::::::::::::::::::::: ::::::::: gi|818 KGVGYMKKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLYAADNGNPKA 120 130 140 150 160 170 190 200 210 220 230 240 mKIAA1 SVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDAAL ::::::::::::::::::.:::::::::::::::.:::::::::::.::::::::::::: gi|818 SVKAQSILGLFYSMKEPKDLEKAFFWHSEACGNGNLESQGALGLMYLYGQGIRQDTDAAL 180 190 200 210 220 230 250 260 270 280 290 300 mKIAA1 HCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEF :::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::: gi|818 HCLREAAERGNVYAQGILVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLPEF 240 250 260 270 280 290 310 320 330 340 350 mKIAA1 IIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI : ::::::.::..::::::::: ::: ::::::::::::::::::::::::::::: gi|818 ISKGMAMASFYYARCLQLGLGITKDEASAKHYYSKACRLNPTLADELHSLLIHQRI 300 310 320 330 340 >>gi|149742772|ref|XP_001490987.1| PREDICTED: similar to (348 aa) initn: 2048 init1: 1983 opt: 2046 Z-score: 2513.5 bits: 473.6 E(): 2.7e-131 Smith-Waterman score: 2046; 85.920% identity (95.402% similar) in 348 aa overlap (11-356:1-348) 10 20 30 40 50 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPF--SLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQF :::.::.:::::: ::::::::. :::::.::: :.: :::::: :::. gi|149 MKLTSENLPKNPFYTSLSQYAAKNPKFFQWRKEKTDHYSHANLVDRALQL 10 20 30 40 50 60 70 80 90 100 110 mKIAA1 LKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIAN :::::::::::::::::::::::::::::: :::::.:::::: ::::::::::::: . gi|149 LKERIRRGDAMAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTPD 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA1 AEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNP :::::.::.::.:: ::.. ::.:::::::::::.::::::::.:.::::::.::::::: gi|149 AEKGVEYMKKIVDSPCPKARHLQFAAAYNLGRAYYEGKGVKRSEEDAERLWLFAADNGNP 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA1 KASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDA ::::::::::::.:: ::::::::::.:::::::::.:::::::::::::::::::::.: gi|149 KASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEA 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA1 ALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLP ::::::::::::::::::.:::::::::::::::.::::::::::::::::::.:::::: gi|149 ALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAKVTDCLP 240 250 260 270 280 290 300 310 320 330 340 350 mKIAA1 EFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI ::: .:::::.:::.::::::::: ::: .::.::::::::::.::::::::.:.::: gi|149 EFINRGMAMASFYHARCLQLGLGITKDEATAKQYYSKACRLNPALADELHSLVIRQRI 300 310 320 330 340 >>gi|119918083|ref|XP_616622.3| PREDICTED: similar to LR (348 aa) initn: 2041 init1: 1980 opt: 2039 Z-score: 2504.9 bits: 472.0 E(): 8.1e-131 Smith-Waterman score: 2039; 85.345% identity (95.115% similar) in 348 aa overlap (11-356:1-348) 10 20 30 40 50 mKIAA1 SDKDPHCGDRMKLSSEKLPKNP--FSLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQF :::.:::::::: :::..:::. : :::.::: :.: :::::: :::. gi|119 MKLTSEKLPKNPSYTSLSHFAAKNAKVFQWRKEKTDHYSHANLVDKALQL 10 20 30 40 50 60 70 80 90 100 110 mKIAA1 LKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIAN :::::::::.:::::::::::::::::::: :::::.:::::: ::::::::::::: :. gi|119 LKERIRRGDTMAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTAAD 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA1 AEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNP .::::.::.::.:: ::.. ::::::::::::::.:::::::::.:::::::.::::::: gi|119 SEKGVEYMKKIVDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSDKEAERLWLFAADNGNP 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA1 KASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDA ::::::::::::.:: ::::::::::.:::::::::.:::::::::::::::::::::.: gi|119 KASVKAQSILGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYFYGQGIRQDTEA 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA1 ALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLP ::::::::::::::::::.:::::::::::::::.::::::::::::::::::.:::::: gi|119 ALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLP 240 250 260 270 280 290 300 310 320 330 340 350 mKIAA1 EFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI ::: .:::::.:::.::::::::. ::: .::.::::::::::.::::::.::::::: gi|119 EFISRGMAMASFYHARCLQLGLGVTKDEATAKRYYSKACRLNPALADELHTLLIHQRI 300 310 320 330 340 >>gi|109076354|ref|XP_001085019.1| PREDICTED: similar to (348 aa) initn: 1967 init1: 1967 opt: 2036 Z-score: 2501.2 bits: 471.3 E(): 1.3e-130 Smith-Waterman score: 2036; 85.345% identity (95.402% similar) in 348 aa overlap (11-356:1-348) 10 20 30 40 50 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPF--SLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQF :::.::::::::: :.::::::.:: :::.::: :.: :::::: :::. gi|109 MKLTSEKLPKNPFYASISQYAAKNQKPFQWEKEKTDHYSHANLVDKALQL 10 20 30 40 50 60 70 80 90 100 110 mKIAA1 LKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIAN ::.:: .::..::::::::::::::::::: :::::.:::::: :::::::::::::: : gi|109 LKKRILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIEEKDHQATYQLGVMYYDGLGTILN 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA1 AEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNP .::::.::.::::: ::.. ::::::::::::::.::::::::.::::::::.::::::: gi|109 SEKGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLFAADNGNP 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA1 KASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDA ::::::::.:::.:: ::::::::::.:::::::::.:::::::::::.:::::::::.: gi|109 KASVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEA 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA1 ALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLP ::::::::::::::::::.:::::::::::::::.::::::::::::::::::.:::::: gi|109 ALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLP 240 250 260 270 280 290 300 310 320 330 340 350 mKIAA1 EFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI ::: .:::::.:::.::::::::: .:: .:::::::::::::.::::::::::.::: gi|109 EFISRGMAMASFYHARCLQLGLGITRDEATAKHYYSKACRLNPALADELHSLLIRQRI 300 310 320 330 340 >>gi|166199159|sp|Q9P2M1.2|LR2BP_HUMAN RecName: Full=LRP (347 aa) initn: 1918 init1: 1848 opt: 2029 Z-score: 2492.6 bits: 469.7 E(): 3.9e-130 Smith-Waterman score: 2029; 85.632% identity (95.115% similar) in 348 aa overlap (11-356:1-347) 10 20 30 40 50 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPF--SLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQF :::.::::::::: :.::::::.:::::::::: :: :::::: :::. gi|166 MKLTSEKLPKNPFYASVSQYAAKNQKFFQWKKEKTDY-THANLVDKALQL 10 20 30 40 60 70 80 90 100 110 mKIAA1 LKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIAN ::::: .::..::::::::::::::::::: :::::.:::::: ::::::::::::: . gi|166 LKERILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIKEKDHQATYQLGVMYYDGLGTTLD 50 60 70 80 90 100 120 130 140 150 160 170 mKIAA1 AEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNP :::::.::.::::: ::.. ::::::::::::::.::::::::.::::::::.::::::: gi|166 AEKGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLIAADNGNP 110 120 130 140 150 160 180 190 200 210 220 230 mKIAA1 KASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDA ::::::::.:::.:: ::::::::::.:::::::::.:::::::::::.:::::::::.: gi|166 KASVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEA 170 180 190 200 210 220 240 250 260 270 280 290 mKIAA1 ALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLP ::.:::::::::::::::.:::::::::::::::.::::::::::::::::::.:::::: gi|166 ALQCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLP 230 240 250 260 270 280 300 310 320 330 340 350 mKIAA1 EFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI ::: .:::::.:::.::::::::: .:: .:::::::::::::.::::::::::.::: gi|166 EFIGRGMAMASFYHARCLQLGLGITRDETTAKHYYSKACRLNPALADELHSLLIRQRI 290 300 310 320 330 340 >>gi|75075420|sp|Q4R3N2.1|LR2BP_MACFA RecName: Full=LRP2 (348 aa) initn: 1958 init1: 1958 opt: 2027 Z-score: 2490.1 bits: 469.3 E(): 5.4e-130 Smith-Waterman score: 2027; 85.057% identity (95.402% similar) in 348 aa overlap (11-356:1-348) 10 20 30 40 50 mKIAA1 SDKDPHCGDRMKLSSEKLPKNPF--SLSQYAAKQQKFFQWKKEKPDYYLHANLVDTALQF :::.::::::::: :.::::::.:: :::.::: :.: :::::: :::. gi|750 MKLTSEKLPKNPFYASISQYAAKNQKSFQWEKEKTDHYSHANLVDKALQL 10 20 30 40 50 60 70 80 90 100 110 mKIAA1 LKERIRRGDAMAYFLRGQLYFEEGWYEEALAQFEEIQEKDHQAIYQLGVMYYDGLGTIAN ::.:: .::..::::::::::::::::::: :::::.:::::: :::::::::::::: : gi|750 LKKRILKGDTLAYFLRGQLYFEEGWYEEALEQFEEIEEKDHQATYQLGVMYYDGLGTILN 60 70 80 90 100 110 120 130 140 150 160 170 mKIAA1 AEKGVNYMRKILDSSCPQTMHLKFAAAYNLGRAYFEGKGVKRSDEEAERLWLLAADNGNP .::::.::.::::: ::.. ::::::::::::::.::::::::.::::::::.::::::: gi|750 SEKGVDYMKKILDSPCPKARHLKFAAAYNLGRAYYEGKGVKRSNEEAERLWLFAADNGNP 120 130 140 150 160 170 180 190 200 210 220 230 mKIAA1 KASVKAQSILGLFYSMKEPKELEKAFFWHSEACGNGSLESQGALGLMYFYGQGIRQDTDA ::::::::.:::.:: ::::::::::.:::::::::.:::::::::::.:::::::::.: gi|750 KASVKAQSMLGLYYSTKEPKELEKAFYWHSEACGNGNLESQGALGLMYLYGQGIRQDTEA 180 190 200 210 220 230 240 250 260 270 280 290 mKIAA1 ALHCLREAAERGNVYAQGTLVEYYYKMKFFTKCVSFSKRIADYDEVHDIPMIAHVTDCLP ::::::::::::::::::.:::::::::::::::.::::::::::::::::::.:::::: gi|750 ALHCLREAAERGNVYAQGNLVEYYYKMKFFTKCVAFSKRIADYDEVHDIPMIAQVTDCLP 240 250 260 270 280 290 300 310 320 330 340 350 mKIAA1 EFIIKGMAMAAFYHGRCLQLGLGIMKDEESAKHYYSKACRLNPTLADELHSLLIHQRI ::: .:::::.:::.::::::::: .:: .:::::::::::::.:::::.::::.::: gi|750 EFISRGMAMASFYHARCLQLGLGITRDEATAKHYYSKACRLNPALADELRSLLIRQRI 300 310 320 330 340 356 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 18:16:13 2009 done: Fri Mar 13 18:22:19 2009 Total Scan time: 839.190 Total Display time: 0.080 Function used was FASTA [version 34.26.5 April 26, 2007]