FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1317.ptfa, 418 aa vs ./tmplib.26680 library 1768599 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 5.5355+/-0.00441; mu= 10.8005+/- 0.294 mean_var=98.4783+/-22.649, 0's: 0 Z-trim: 3 B-trim: 0 in 0/36 Lambda= 0.1292 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1778 ( 227 res) mbg21704 ( 227) 602 122 3.9e-29 mKIAA4250 ( 239 res) mpj00429 ( 239) 209 49 4.6e-07 >>mKIAA1778 ( 227 res) mbg21704 (227 aa) initn: 735 init1: 514 opt: 602 Z-score: 615.5 bits: 122.0 E(): 3.9e-29 Smith-Waterman score: 682; 53.304% identity (65.054% ungapped) in 227 aa overlap (85-270:1-227) 60 70 80 90 100 110 mKIAA1 DLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPERGRLKREAEYFQLPDLVKLL- .::::.::::.::.::::::.::.::. : mKIAA1 LVLPDYFPERSRLQREAEYFELPELVRRLG 10 20 30 120 130 140 mKIAA1 APEDVKQSP----------------DEFCHSDF------EDASQGSD-------TR---- ::.. .: ::. . : :: :. .: mKIAA1 APQQPGPGPPPPHSRRGVHKEGSLGDELLPLGYAEPEPQEGASAGAPSPTLELASRSPSG 40 50 60 70 80 90 150 160 170 180 190 mKIAA1 -----ICPPSSLLPHDRKWGFITVGYRGSCTLGREGQADAKFRRVPRILVCGRISLAKEV . ::. : .:. :.::.::::: :.::..::::::::: :: :::. :::::: mKIAA1 GAAGPLLTPSQSLDGSRRSGYITIGYRGSYTIGRDAQADAKFRRVARITVCGKTSLAKEV 100 110 120 130 140 150 200 210 220 230 240 250 mKIAA1 FGETLNESRDPDRAPERYTSRFYLKFKHLERAFDMLSECGFHMVACNSSVTASFVN--QY ::.:::::::::: :::::::.::::. ::.::: ::: :::::::.:. : .:.. . mKIAA1 FGDTLNESRDPDRPPERYTSRYYLKFNFLEQAFDKLSESGFHMVACSSTGTCAFASSTDQ 160 170 180 190 200 210 260 270 280 290 300 310 mKIAA1 TEDKIWSSYTEYVFYREPSRWSSSHCDCCCKNGKGDKGESGTSCNDLSTSSCDSQSEASS .:::::.::::::: :: mKIAA1 SEDKIWTSYTEYVFCRE 220 >>mKIAA4250 ( 239 res) mpj00429 (239 aa) initn: 145 init1: 98 opt: 209 Z-score: 219.2 bits: 48.7 E(): 4.6e-07 Smith-Waterman score: 209; 34.906% identity (35.922% ungapped) in 106 aa overlap (8-113:41-143) 10 20 30 mKIAA1 YYPRDQGAAVPNSFPEVIELNVGGQVYFTRHSTLISI : :.. . ..::::: ..: ..:: mKIAA4 CELLPPAPSGLGAGLGGGLCRRCSAGMGALAQRPGGVSKWVRLNVGGTYFLTTRQTLCRD 20 30 40 50 60 70 40 50 60 70 80 90 mKIAA1 PHSLLWKMFSPKRDTANDLAKDSKGRFFIDRDGFLFRYILDYLRDRQVVLPDHFPERGRL :.:.:... . : .: :: : ..:::: : .:.::: ..:. . :.: : mKIAA4 PKSFLYRLCQADPDLDSD--KDETGAYLIDRDPTYFGPVLNYLRHGKLVINKDLAEEGVL 80 90 100 110 120 100 110 120 130 140 150 mKIAA1 KREAEYFQLPDLVKLLAPEDVKQSPDEFCHSDFEDASQGSDTRICPPSSLLPHDRKWGFI . :::.... .:.::. mKIAA4 E-EAEFYNITSLIKLVKDKIRERDSRISQMPVKHVYRVLQCQEEELTQMVSTMSDGWKFE 130 140 150 160 170 180 418 residues in 1 query sequences 1768599 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:40:46 2006 done: Mon Mar 27 10:40:47 2006 Scan time: 0.630 Display time: 0.010 Function used was FASTA [version 3.4t11 Apr 17, 2002]