FASTA searches a protein or DNA sequence data bank
version 3.4t11 Apr 17, 2002
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
../query/mKIAA1243.ptfa, 1080 aa
vs ./tmplib.26680 library
1767937 residues in 2168 sequences
Expectation_n fit: rho(ln(x))= 11.2903+/-0.00921; mu= -10.2223+/- 0.608
mean_var=437.9779+/-109.730, 0's: 0 Z-trim: 7 B-trim: 78 in 1/35
Lambda= 0.0613
FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
join: 39, opt: 27, open/ext: -10/-2, width: 16
The best scores are: opt bits E(2168)
mKIAA1498 ( 1495 res) mbg07989 (1495) 284 40 0.0028
>>mKIAA1498 ( 1495 res) mbg07989 (1495 aa)
initn: 329 init1: 99 opt: 284 Z-score: 151.2 bits: 40.2 E(): 0.0028
Smith-Waterman score: 329; 21.935% identity (25.139% ungapped) in 620 aa overlap (262-840:827-1408)
240 250 260 270 280 290
mKIAA1 LKTPLTADQPPTRSTAPVLPTNTVSSAKSGPMLVKQSHPKNPNDKHRSKKCKDPKPRVKK
:.: . ::: :: : ..
mKIAA1 QDENATHTQLYTSHFELMKMTAGKRSPPIKPLLGMNPFQKNP--KHASVLAESG------
800 810 820 830 840
300 310 320 330 340
mKIAA1 LKYHQYIPPNQKGEKSEPQMDSNYARLLQQQQLFLQLQILS----QQQQQQQQQHYNYQT
..: . .:: : . .. .. . : .:: : . . :::::::::. . :
mKIAA1 INYDKPLPPIQVASLRAERI-AKEKKALADQQKAQQPPVTQPPPQQQQQQQQQQQQQQQQ
850 860 870 880 890 900
350 360 370 380 390 400
mKIAA1 ILPAPIKTDKNSSSGSNSGSSSSMPARRPGPLPSSLDDLKVSELKTELKLRGLPVS---G
: : . . ...::. :: .:. :. ..... .. . .: :. :
mKIAA1 QQPPPPPQQPPPPVPQPQAASSQTPAGQPAVQPQPQPQVQAQPQPVQPQSKGQPTMTTVG
910 920 930 940 950 960
410 420 430 440 450 460
mKIAA1 TKPDLIERLKPYQEVTSSNLATGSIVAVSSATIVTSNPEVTVALPVTTLHNAVTSSVSTF
. : .: ::.... ::.. . .. ... : .: : . :. .. :
mKIAA1 SAAVLAGTIKT--SVTGTSIPTGTVSGNVIVNTIAGVPAATFQSINKRLASPVAPGTLTT
970 980 990 1000 1010 1020
470 480 490 500 510 520
mKIAA1 KADLALPATSSVPHVENAHSPLPISPSPSEQSSLSTDDTNMTDTFTE---IMTMMSPSQL
.. : :: .: :... : . . . : .:. . . . : . : ..: :
mKIAA1 SGGSA-PA--QVVHTQQRAVGSPATATTDLVSMTTTQGVRAVTSVTASAVVTTNLTPVQT
1030 1040 1050 1060 1070 1080
530 540 550 560 570
mKIAA1 LCSSPLRVVSH-------DDSLSPSS--STLSTLELDAAEKDRKLQEKEKQIEELKRKLE
: . ::. ...:.. . : . . ..... : .. :. .:. . .
mKIAA1 PTRSLVTQVSQATGVQLPGKTITPAAHFQLLRQQQQQQQQQQQQQQTSQVQVPQLQSQAQ
1090 1100 1110 1120 1130 1140
580 590 600 610 620
mKIAA1 QEQKLVEVLKMQ----LEVEKRGQQRPPDPQPSDPPHPFNTSDPKHGSVGSSIKDEASLP
. .. : :. ....:. .: ::.: :: : : . . ...
mKIAA1 SPAQIKAVSKLGPEHIIKMQKQKMQLPPQP----PP-PQAQPGPPQQPAQVQVQTPQPPQ
1150 1160 1170 1180 1190
630 640 650 660 670 680
mKIAA1 DCSSPQ-QPITVPGHSVGQPISTGSQTLVAKKTVVVKQEVPMAQAEQQNVVSQFYLSSQG
. .::: .:.: .: . . : :.. :. .. .::...:. . : . .
mKIAA1 QQQSPQLTTVTAP-----RPGALLTGTTVTNLQVA---RLLQAQGQMQTQTPQPAQVALA
1200 1210 1220 1230 1240
690 700 710 720 730
mKIAA1 QPPALVAQPQALLTTQTTQLLLPVSIQGSNV-----------TSVQLPVGSLQL-----Q
.:: .:. : :.... . : :... : .: : : ::. :: :
mKIAA1 KPP-VVSVPAAVVSSPGVTTL-PMNVAGISVAIGQPQKTAGQTVVAQPVNVQQLLKYKQQ
1250 1260 1270 1280 1290 1300
740 750 760 770 780 790
mKIAA1 TPAQGRVQAQPHVAAATQVPAAALPSA-LTSALPQKQEAFPQHVLGQPQPVRKVFTNSAP
: .: . ::.:: . . : . .:. ::.. :. ::. :. ..:
mKIAA1 TAVQQQKAIQPQVAQGQAAVQQKLTTQQITTQGPQQKVAYAA------QPALKTQFLTTP
1310 1320 1330 1340 1350 1360
800 810 820 830 840 850
mKIAA1 NTVLQYQRQPGPTNQQPFVSKTSNPALQSRTAPLAPLQNGPSLASKPSSPPPPQQFVVQH
. : :. : . : .. .. : . .. .:.: .:. : ::. .::
mKIAA1 --ISQAQKLAGTQQVQTQIQVAKLPQVVQQQTPVASIQQVAS-ASQQASPQTVTLTQATA
1370 1380 1390 1400 1410
860 870 880 890 900 910
mKIAA1 SLFATPITKTKDPPRYEEAIKQARSTQPALPEVSSVHSQQMDDLFDILIKSGEISFPIKE
mKIAA1 AGQQVQMIPTVTATAQLVQQKLIQQQVVTTASASLQTPGGPSPAQLPASSDSPSQQPKLQ
1420 1430 1440 1450 1460 1470
1080 residues in 1 query sequences
1767937 residues in 2168 library sequences
Scomplib [34t11]
start: Mon Mar 27 10:39:08 2006 done: Mon Mar 27 10:39:10 2006
Scan time: 1.100 Display time: 0.080
Function used was FASTA [version 3.4t11 Apr 17, 2002]