FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1243.ptfa, 1080 aa vs ./tmplib.26680 library 1767937 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 11.2903+/-0.00921; mu= -10.2223+/- 0.608 mean_var=437.9779+/-109.730, 0's: 0 Z-trim: 7 B-trim: 78 in 1/35 Lambda= 0.0613 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 39, opt: 27, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1498 ( 1495 res) mbg07989 (1495) 284 40 0.0028 >>mKIAA1498 ( 1495 res) mbg07989 (1495 aa) initn: 329 init1: 99 opt: 284 Z-score: 151.2 bits: 40.2 E(): 0.0028 Smith-Waterman score: 329; 21.935% identity (25.139% ungapped) in 620 aa overlap (262-840:827-1408) 240 250 260 270 280 290 mKIAA1 LKTPLTADQPPTRSTAPVLPTNTVSSAKSGPMLVKQSHPKNPNDKHRSKKCKDPKPRVKK :.: . ::: :: : .. mKIAA1 QDENATHTQLYTSHFELMKMTAGKRSPPIKPLLGMNPFQKNP--KHASVLAESG------ 800 810 820 830 840 300 310 320 330 340 mKIAA1 LKYHQYIPPNQKGEKSEPQMDSNYARLLQQQQLFLQLQILS----QQQQQQQQQHYNYQT ..: . .:: : . .. .. . : .:: : . . :::::::::. . : mKIAA1 INYDKPLPPIQVASLRAERI-AKEKKALADQQKAQQPPVTQPPPQQQQQQQQQQQQQQQQ 850 860 870 880 890 900 350 360 370 380 390 400 mKIAA1 ILPAPIKTDKNSSSGSNSGSSSSMPARRPGPLPSSLDDLKVSELKTELKLRGLPVS---G : : . . ...::. :: .:. :. ..... .. . .: :. : mKIAA1 QQPPPPPQQPPPPVPQPQAASSQTPAGQPAVQPQPQPQVQAQPQPVQPQSKGQPTMTTVG 910 920 930 940 950 960 410 420 430 440 450 460 mKIAA1 TKPDLIERLKPYQEVTSSNLATGSIVAVSSATIVTSNPEVTVALPVTTLHNAVTSSVSTF . : .: ::.... ::.. . .. ... : .: : . :. .. : mKIAA1 SAAVLAGTIKT--SVTGTSIPTGTVSGNVIVNTIAGVPAATFQSINKRLASPVAPGTLTT 970 980 990 1000 1010 1020 470 480 490 500 510 520 mKIAA1 KADLALPATSSVPHVENAHSPLPISPSPSEQSSLSTDDTNMTDTFTE---IMTMMSPSQL .. : :: .: :... : . . . : .:. . . . : . : ..: : mKIAA1 SGGSA-PA--QVVHTQQRAVGSPATATTDLVSMTTTQGVRAVTSVTASAVVTTNLTPVQT 1030 1040 1050 1060 1070 1080 530 540 550 560 570 mKIAA1 LCSSPLRVVSH-------DDSLSPSS--STLSTLELDAAEKDRKLQEKEKQIEELKRKLE : . ::. ...:.. . : . . ..... : .. :. .:. . . mKIAA1 PTRSLVTQVSQATGVQLPGKTITPAAHFQLLRQQQQQQQQQQQQQQTSQVQVPQLQSQAQ 1090 1100 1110 1120 1130 1140 580 590 600 610 620 mKIAA1 QEQKLVEVLKMQ----LEVEKRGQQRPPDPQPSDPPHPFNTSDPKHGSVGSSIKDEASLP . .. : :. ....:. .: ::.: :: : : . . ... mKIAA1 SPAQIKAVSKLGPEHIIKMQKQKMQLPPQP----PP-PQAQPGPPQQPAQVQVQTPQPPQ 1150 1160 1170 1180 1190 630 640 650 660 670 680 mKIAA1 DCSSPQ-QPITVPGHSVGQPISTGSQTLVAKKTVVVKQEVPMAQAEQQNVVSQFYLSSQG . .::: .:.: .: . . : :.. :. .. .::...:. . : . . mKIAA1 QQQSPQLTTVTAP-----RPGALLTGTTVTNLQVA---RLLQAQGQMQTQTPQPAQVALA 1200 1210 1220 1230 1240 690 700 710 720 730 mKIAA1 QPPALVAQPQALLTTQTTQLLLPVSIQGSNV-----------TSVQLPVGSLQL-----Q .:: .:. : :.... . : :... : .: : : ::. :: : mKIAA1 KPP-VVSVPAAVVSSPGVTTL-PMNVAGISVAIGQPQKTAGQTVVAQPVNVQQLLKYKQQ 1250 1260 1270 1280 1290 1300 740 750 760 770 780 790 mKIAA1 TPAQGRVQAQPHVAAATQVPAAALPSA-LTSALPQKQEAFPQHVLGQPQPVRKVFTNSAP : .: . ::.:: . . : . .:. ::.. :. ::. :. ..: mKIAA1 TAVQQQKAIQPQVAQGQAAVQQKLTTQQITTQGPQQKVAYAA------QPALKTQFLTTP 1310 1320 1330 1340 1350 1360 800 810 820 830 840 850 mKIAA1 NTVLQYQRQPGPTNQQPFVSKTSNPALQSRTAPLAPLQNGPSLASKPSSPPPPQQFVVQH . : :. : . : .. .. : . .. .:.: .:. : ::. .:: mKIAA1 --ISQAQKLAGTQQVQTQIQVAKLPQVVQQQTPVASIQQVAS-ASQQASPQTVTLTQATA 1370 1380 1390 1400 1410 860 870 880 890 900 910 mKIAA1 SLFATPITKTKDPPRYEEAIKQARSTQPALPEVSSVHSQQMDDLFDILIKSGEISFPIKE mKIAA1 AGQQVQMIPTVTATAQLVQQKLIQQQVVTTASASLQTPGGPSPAQLPASSDSPSQQPKLQ 1420 1430 1440 1450 1460 1470 1080 residues in 1 query sequences 1767937 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:39:08 2006 done: Mon Mar 27 10:39:10 2006 Scan time: 1.100 Display time: 0.080 Function used was FASTA [version 3.4t11 Apr 17, 2002]