FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1965.ptfa, 690 aa vs ./tmplib.26680 library 1768327 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 4.4902+/-0.00495; mu= 18.2409+/- 0.332 mean_var=121.2755+/-26.970, 0's: 0 Z-trim: 8 B-trim: 0 in 0/36 Lambda= 0.1165 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1781 ( 1140 res) mbg19640 (1140) 190 44 9.9e-05 mKIAA0021 ( 853 res) mbh01716 ( 853) 155 38 0.005 >>mKIAA1781 ( 1140 res) mbg19640 (1140 aa) initn: 147 init1: 54 opt: 190 Z-score: 177.3 bits: 44.0 E(): 9.9e-05 Smith-Waterman score: 261; 23.031% identity (29.356% ungapped) in 673 aa overlap (64-685:148-726) 40 50 60 70 80 90 mKIAA1 LNCSGVPMSLASSFLTGSVAKCENEGEVLQIPFITDNPCIMCVCLNKEVTCKREKC---P ::. :.. :. :.. . ::. : : mKIAA1 YKTAYRRGLRTMYRRRSQCCPGYYENGDFCIPLCTEE-CMHGRCVSPD-TCHCEPGWGGP 120 130 140 150 160 170 100 110 120 130 140 mKIAA1 VLSRDCALAIKQRGA-CCERCKGCTHEGRTYNSSFKWQTPAEPCV--LR--QCQEGVVTE : : .. : : .::. : ..: : : : :. .: .:.: . mKIAA1 DCSSGCDS--EHWGPHCSNRCQ-C-QNGALCNPI----TGACVCAPGFRGWRCEELCAPG 180 190 200 210 220 150 160 170 180 190 mKIAA1 SEVR-CVVHCKKPAEHQGACC-PTCPGCVFE-GVQYREGEEFQPEGNK---C-ITCSCV- .. . : . :. :.:: : : :. : ::. : :.. : . : : mKIAA1 THGKGCQLLCQC---HHGASCDPRTGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQN 230 240 250 260 270 280 200 210 220 230 240 250 mKIAA1 GGRTQCVREVCPILSCPQHLSHTPSGQCCPK-CLGQRKVFDLPF---GSCLFRSDVYDNG :: . . : .:: . . .: :: .:: : : :.: . mKIAA1 GGTCHHITGEC---ACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQCDHVTGQCHCT 290 300 310 320 330 340 260 270 280 290 300 mKIAA1 ASFVYDNCTV-CTCKDSTMVCKKKCS--HPGVCNSDEDAC-CE------DCLLRVPPEDI :... : : : ..:...:. . : :. :: :: .: :. :: . mKIAA1 AGYMGDRCQEECPFGTFGFLCSQRCDCHNGGQCSPATGACECEPGYKGPSCQERLCPEGL 350 360 370 380 390 400 310 320 330 340 350 mKIAA1 KVCKFGSKIFRDGEMWSSVNC----SICACVKGKTECRKKQCVPVSSCPQGKILNRKGCC . : . . ....: . :.: : . . : ::: : : :: mKIAA1 H--GPGCTLPCPCDTENTISCHPVTGACTCQPGWS---GHYCNE--SCPAGYYGN--GCQ 410 420 430 440 450 360 370 380 390 400 410 mKIAA1 PICTEKPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVKNDARRTRS :: . :. : : : :.: :. :. .: . : : . mKIAA1 LPCTCQNGA-----DCHSIT---------GSCT------CA-PGFMGEVCAVPCAAGTYG 460 470 480 490 420 430 440 450 460 470 mKIAA1 FSWTKSVELMLGESTVSLQQHLTVR--WNGSRIALPCHTPHFHIDLDGYLLKVTTRAGLE . .. : . .. : : :.: .::: : :. . . .. mKIAA1 PNCSSVCSCSNGGTCSPVDGSCTCREGWQGLDCSLPC--PSGTWGLNCNETCICANGAAC 500 510 520 530 540 480 490 500 510 520 530 mKIAA1 ISWDGDSFVEVMAAPHLKGKLCGL-CGNYNGHKRDDLIGGDGNFKFDVDDFAESWRVESN .::. .: : : : : ::.: .. .. . .... mKIAA1 SPFDGSC----ACTPGWLGDSCELPCP-------------DGTFGLNCSEHCDCSHADG- 550 560 570 580 590 540 550 560 570 580 590 mKIAA1 EFCNRPQRKPVPELCQGTVKVKLRAHRECQKLKSWEFQTCHSTVDYTTFYRSC-VTDMCE :. :: : : : .: : :: . .: :. :: mKIAA1 --CD-----PVTGHCC------------C--LAGWTGIRCDSTCPPGRWGPNCSVSCSCE 600 610 620 630 600 610 620 630 640 mKIAA1 ----C-PVHKNCYCESFLAYTRACQR---EGIKVH--WEPQQSCAATQ--CKHGAVYDTC : : .: : . ::: :. : .: :. .. :.: . : mKIAA1 NGGSCSPEDGSCECAPGFRGP-LCQRICPPGFYGHGCAQPCPLCVHSRGPCHHISGICEC 640 650 660 670 680 650 660 670 680 690 mKIAA1 GPGCV-KTCDNWNEIGPCNKPCIAGCHCPANLVLHKGRCIKPVLCPQR :: :.. : .. : : : : : : .:. mKIAA1 LPGFSGALCNQVCAGGHFGQDCAQLCSCANN-----GTC-SPIDGSCQCFPGWIGKDCSQ 690 700 710 720 730 740 mKIAA1 ACPSGFWGSACFHTCSCHNGASCSAEDGACHCTPGWTGLFCTQRCPSAFFGKDCGHICQC 750 760 770 780 790 800 >>mKIAA0021 ( 853 res) mbh01716 (853 aa) initn: 121 init1: 80 opt: 155 Z-score: 146.7 bits: 37.9 E(): 0.005 Smith-Waterman score: 169; 25.275% identity (31.944% ungapped) in 273 aa overlap (70-304:431-684) 40 50 60 70 80 90 mKIAA1 PMSLASSFLTGSVAKCENEGEVLQIPFITDNPCIMCVC-LNKEVTCKREKCPVLSRDCAL .: : : :: :. . : . : : mKIAA0 LTLNKGGSCLLNIPKPDEAYSAPSCGNKLVDPGEECDCGTAKE--CEVDPC-CEGSTCKL 410 420 430 440 450 100 110 120 130 mKIAA1 ---AIKQRGACCERCK----GCTHEGRT-------Y-NSSFKWQTP------AEPCVLRQ : : ::. :. : .:.: : :.: .. : . :: . mKIAA0 KSFAECAYGDCCKDCQFLPGGSMCRGKTSECDVPEYCNGSSQFCPPDVFIQNGYPCQNSK 460 470 480 490 500 510 140 150 160 170 180 190 mKIAA1 --CQEGVVTESEVRC-VVHCKKPAEHQGACCP--TCPGCVFEGVQYREGEEFQPEGNKCI : .:. ...: :. .: : . : : . . : :.. :: mKIAA0 AYCYNGMCQYYDAQCQVIFGSKAKAAPRDCFIEVNSKGDRFGNCGFS-GSEYK----KCA 520 530 540 550 560 570 200 210 220 230 240 250 mKIAA1 TCSCVGGRTQC--VREVCPILSCPQHLSHTPSGQCCPKCLGQRKVFDLPFGSCLFRSDVY : . . :. :: :... :... . .::: :: : :. .:: . . mKIAA0 TGNALCGKLQCENVQDM-PVFGIVPAIIQTPSRGT--KCWG----VDFQLGSDVPDPGMV 580 590 600 610 620 260 270 280 290 300 mKIAA1 DNGASFVYDNCTVC---TCKDSTMV---C--KKKCSHPGVCNSDEDACCEDCLLRVPPE- ..:.. : .: : ..... : . :: :::::... ::: .::. mKIAA0 NEGTKC--DAGKICRNFQCVNASVLNYDCDIQGKCHGHGVCNSNKNCHCEDGW--APPHC 630 640 650 660 670 680 310 320 330 340 350 360 mKIAA1 DIKVCKFGSKIFRDGEMWSSVNCSICACVKGKTECRKKQCVPVSSCPQGKILNRKGCCPI : : mKIAA0 DTKGYGGSVDSGPTYNAKSTALRDGLLVFFFLIVPLVAAAIFLFIKRDELRKTFRKKRSQ 690 700 710 720 730 740 690 residues in 1 query sequences 1768327 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:56:41 2006 done: Mon Mar 27 10:56:42 2006 Scan time: 0.820 Display time: 0.070 Function used was FASTA [version 3.4t11 Apr 17, 2002]