FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA1186.ptfa, 404 aa vs ./tmplib.26680 library 1768613 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 3.9638+/-0.00403; mu= 18.6300+/- 0.271 mean_var=74.9496+/-16.715, 0's: 0 Z-trim: 2 B-trim: 0 in 0/36 Lambda= 0.1481 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA4251 ( 630 res) mfj01022 ( 630) 627 143 3.9e-35 mFLJ00238 ( 1452 res) mfj01101 (1452) 157 43 0.00011 >>mKIAA4251 ( 630 res) mfj01022 (630 aa) initn: 576 init1: 449 opt: 627 Z-score: 723.2 bits: 143.4 E(): 3.9e-35 Smith-Waterman score: 627; 32.209% identity (34.202% ungapped) in 326 aa overlap (6-320:163-480) 10 20 30 mKIAA1 TMSGRVGDLSPKQEEALAKFRENVQDVLPTLPNPD .:::.: :: : ..:. .:.. : mKIAA4 GENLSSPGTASEPVVGTPDDKLDADYIKRYLGDLTPLQESCLIRLRQWLQETHKG-KIPK 140 150 160 170 180 190 40 50 60 70 80 90 mKIAA1 DYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDKII-SWQPPEVIQQYLSGGRCGYDL : .::.::::.:...:.. .. . . .:::...: :. .: ::.:. .: .:: .: mKIAA4 DEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILDTWTPPQVLLDYYAGGWHHHDK 200 210 220 230 240 250 100 110 120 130 140 150 mKIAA1 DGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRDCELLLQECIQQTTKLGKKIETITMIY :: :.. .: .:.:::. . ... ::: . : :..: ..: .:. : . : . mKIAA4 DGRPLYVLRLGQMDTKGLVRALGEEALLRYVLSINEEGLRRCEENTKVFGRPISSWTCLV 260 270 280 290 300 310 160 170 180 190 200 210 mKIAA1 DCEGLGLKHLWKPAVEAYGEFLTMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDT : :::...:::.:.:.: ... . : :::::: ::....::..::: ..:..::....: mKIAA4 DLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLLILRAPRVFPVLWTLVSPFIDDNT 320 330 340 350 360 370 220 230 240 250 260 270 mKIAA1 RRKIMVLGANWKEVLLKHISPDQLPVEYGGTMTDPDG-NPKCKSKINYGGDIPKQYYVR- :::... ..: . .: : ..: :: . .: . :: .::. : mKIAA4 RRKFLIYAGN------DYQGPGGL-LDYIDKEIIPDFLSGECMCDVPEGGLVPKSLYRTA 380 390 400 410 420 280 290 300 310 320 mKIAA1 -----DQVKQQYE---HTVQVSRGSSHQVEYEILFPGCVLRWQFMSEGSDVGFGIFLKTK ...: : ....: .:. :.. .:. . :. :.: .:. :.:. mKIAA4 EELENEDLKLWTETIYQSASVFKGAPHEILIQIVDASSVITWDFDVCKGDIVFNIYHSKR 430 440 450 460 470 480 330 340 350 360 370 380 mKIAA1 MGERQRAGEMTEVLPNQRYNSHMVPEDGTLTCSEPGIYVLRFDNTYSFIHAKKVSFTVEV mKIAA4 SPQPPKKDSLGAHSITSPGGNNVQLIDKVWQLGRDYSMVESPLICKEGESVQGSHVTRWP 490 500 510 520 530 540 >>mFLJ00238 ( 1452 res) mfj01101 (1452 aa) initn: 132 init1: 99 opt: 157 Z-score: 176.5 bits: 43.4 E(): 0.00011 Smith-Waterman score: 157; 30.392% identity (31.313% ungapped) in 102 aa overlap (287-387:1344-1443) 260 270 280 290 300 310 mKIAA1 SKINYGGDIPKQYYVRDQVKQQYEHTVQVSRGSSHQ-VEYEILFPGCVLRWQFMSEGSDV :.:... . . :: .. : : :. ... mFLJ00 LLKSGELMIKLPLTVEEVASFGEGSRELFVRSSTYSLITITVAEPGLTISWVFSSDPKSI 1320 1330 1340 1350 1360 1370 320 330 340 350 360 370 mKIAA1 GFGIFLKTKMGERQRAGEMTEVLPNQRYNSHMVPEDGTLTCSEPGIYVLRFDNTYSFIHA .:.. .. : . ..:. : ::: : : ::::.: ::::.: . . mFLJ00 SFSVVFQET--EDTPLDQCKVLIPTTRCNSHKENIRGQLKVRIPGIYLLIFDNTFSRFIS 1380 1390 1400 1410 1420 1430 380 390 400 mKIAA1 KKVSFTVEVLLPDKAAEEKMNQQGADTPK ::: . . : : mFLJ00 KKVLYHLTVDRPVIYDGSDFP 1440 1450 404 residues in 1 query sequences 1768613 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:37:59 2006 done: Mon Mar 27 10:38:00 2006 Scan time: 0.610 Display time: 0.040 Function used was FASTA [version 3.4t11 Apr 17, 2002]