# /usr/local/bin/fasta34_t -T 4 -b50 -d10 -E0.01 -H -O./tmp/mbk00773.fasta.nr -Q ../query/mKIAA1293.ptfa /cdna4/rodent/rouge_util/new.rouge/nfasta/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 mKIAA1293, 376 aa vs /cdna4/rodent/rouge_util/new.rouge/nfasta/nr library 2727779818 residues in 7921681 sequences statistics sampled from 60000 to 7919236 sequences Expectation_n fit: rho(ln(x))= 4.8774+/-0.000182; mu= 11.6277+/- 0.010 mean_var=64.1891+/-12.658, 0's: 37 Z-trim: 52 B-trim: 2162 in 1/66 Lambda= 0.160082 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7921681) gi|148683291|gb|EDL15238.1| mCG17543, isoform CRA_ ( 420) 2377 557.6 1.8e-156 gi|60392303|sp|Q920E5.1|FPPS_MOUSE RecName: Full=F ( 353) 2330 546.7 2.9e-153 gi|74141499|dbj|BAE38529.1| unnamed protein produc ( 353) 2324 545.3 7.5e-153 gi|74183868|dbj|BAE24508.1| unnamed protein produc ( 353) 2321 544.6 1.2e-152 gi|56789674|gb|AAH87886.1| Farnesyl diphosphate sy ( 353) 2316 543.4 2.7e-152 gi|149048094|gb|EDM00670.1| rCG62519, isoform CRA_ ( 420) 2258 530.1 3.3e-148 gi|120478|sp|P05369.2|FPPS_RAT RecName: Full=Farne ( 353) 2213 519.6 3.9e-145 gi|204092|gb|AAA41143.1| farnesyl pyrophosphate sy ( 353) 2211 519.2 5.4e-145 gi|111305075|gb|AAI20219.1| FDPS protein [Bos taur ( 376) 2071 486.9 3.1e-135 gi|109017246|ref|XP_001116071.1| PREDICTED: farnes ( 419) 2069 486.4 4.6e-135 gi|84708902|gb|AAI11257.1| FDPS protein [Bos tauru ( 421) 2068 486.2 5.4e-135 gi|194036063|ref|XP_001929119.1| PREDICTED: simila ( 421) 2065 485.5 8.7e-135 gi|215274250|sp|P14324.4|FPPS_HUMAN RecName: Full= ( 419) 2051 482.3 8.2e-134 gi|109510511|ref|XP_228802.4| PREDICTED: hypotheti ( 353) 2046 481.1 1.6e-133 gi|73961593|ref|XP_537252.2| PREDICTED: similar to ( 420) 2045 480.9 2.1e-133 gi|90078142|dbj|BAE88751.1| unnamed protein produc ( 353) 2039 479.5 4.9e-133 gi|55728661|emb|CAH91070.1| hypothetical protein [ ( 419) 2036 478.8 9e-133 gi|75054285|sp|Q8WMY2.1|FPPS_BOVIN RecName: Full=F ( 353) 2028 476.9 2.8e-132 gi|158430745|pdb|2RAH|A Chain A, Human Fdps Syntha ( 378) 2022 475.6 7.8e-132 gi|209571584|ref|NP_001129294.1| farnesyl diphosph ( 353) 2021 475.3 8.7e-132 gi|71042523|pdb|1ZW5|A Chain A, X-Ray Structure Of ( 355) 2021 475.3 8.7e-132 gi|160286554|pdb|3B7L|A Chain A, Human Farnesyl Di ( 356) 2021 475.3 8.8e-132 gi|61680786|pdb|1YQ7|A Chain A, Human Farnesyl Dip ( 374) 2021 475.3 9.1e-132 gi|157835943|pdb|2QIS|A Chain A, Crystal Structure ( 374) 2018 474.6 1.5e-131 gi|183448387|pdb|3CP6|A Chain A, Crystal Structure ( 376) 2017 474.4 1.7e-131 gi|182399|gb|AAA52423.1| farnesyl pyrophosphate sy ( 353) 2015 473.9 2.3e-131 gi|114560101|ref|XP_001160023.1| PREDICTED: farnes ( 354) 2009 472.5 6e-131 gi|203582|gb|AAA40960.1| cholesterol-regulated pro ( 344) 2005 471.6 1.1e-130 gi|182405|gb|AAA35820.1| farnesyl pyrophosphate sy ( 346) 1993 468.8 7.6e-130 gi|90109287|pdb|2F7M|F Chain F, Crystal Structure ( 350) 1993 468.8 7.7e-130 gi|165934064|gb|ABY74558.1| farnesyl diphosphate s ( 353) 1955 460.1 3.4e-127 gi|109130476|ref|XP_001097788.1| PREDICTED: simila ( 380) 1802 424.8 1.6e-116 gi|1160178|emb|CAA87327.1| farnesyl pyrophosphate ( 348) 1783 420.3 3e-115 gi|157831115|pdb|1FPS|A Chain A, Crystal Structure ( 348) 1646 388.7 1e-105 gi|3915686|sp|P08836.2|FPPS_CHICK RecName: Full=Fa ( 367) 1646 388.7 1.1e-105 gi|157834060|pdb|1UBX|A Chain A, Structure Of Farn ( 367) 1624 383.6 3.6e-104 gi|157834058|pdb|1UBV|A Chain A, Structure Of Farn ( 367) 1617 382.0 1.1e-103 gi|76779745|gb|AAI06511.1| MGC131256 protein [Xeno ( 348) 1606 379.5 6.1e-103 gi|46249832|gb|AAH68912.1| MGC83119 protein [Xenop ( 348) 1597 377.4 2.6e-102 gi|59861885|gb|AAH90384.1| MGC108224 protein [Xeno ( 348) 1586 374.8 1.5e-101 gi|32527731|gb|AAP86267.1| Ac2-125 [Rattus norvegi ( 879) 1552 367.3 7.2e-99 gi|114618461|ref|XP_001135269.1| PREDICTED: hypoth ( 298) 1501 355.2 1.1e-95 gi|109017242|ref|XP_001115980.1| PREDICTED: nesca ( 867) 1485 351.8 3.2e-94 gi|114560079|ref|XP_513857.2| PREDICTED: similar t ( 867) 1473 349.0 2.2e-93 gi|53733369|gb|AAH83515.1| Fdps protein [Danio rer ( 359) 1456 344.8 1.7e-92 gi|66911345|gb|AAH97112.1| Farnesyl diphosphate sy ( 356) 1453 344.1 2.7e-92 gi|114560099|ref|XP_001159738.1| PREDICTED: farnes ( 332) 1441 341.3 1.7e-91 gi|209155566|gb|ACI34015.1| Farnesyl pyrophosphate ( 359) 1438 340.7 3e-91 gi|119573460|gb|EAW53075.1| farnesyl diphosphate s ( 248) 1427 338.0 1.3e-90 gi|126348819|ref|XP_001373435.1| PREDICTED: simila ( 259) 1384 328.1 1.3e-87 >>gi|148683291|gb|EDL15238.1| mCG17543, isoform CRA_a [M (420 aa) initn: 2377 init1: 2377 opt: 2377 Z-score: 2965.6 bits: 557.6 E(): 1.8e-156 Smith-Waterman score: 2377; 100.000% identity (100.000% similar) in 361 aa overlap (16-376:60-420) 10 20 30 40 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFS :::::::::::::::::::::::::::::: gi|148 LQRPSLAYGCPVLGAWHSARWWCQVWTEEPRAFSSSVRMNGNQKLDAYNQEKQNFIQHFS 30 40 50 60 70 80 50 60 70 80 90 100 mKIAA1 QIVKVLTEKELGHPEIGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QIVKVLTEKELGHPEIGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESL 90 100 110 120 130 140 110 120 130 140 150 160 mKIAA1 QRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRL 150 160 170 180 190 200 170 180 190 200 210 220 mKIAA1 LKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 LKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTA 210 220 230 240 250 260 230 240 250 260 270 280 mKIAA1 FYSFYLPIAAAMYMAGIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 FYSFYLPIAAAMYMAGIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDI 270 280 290 300 310 320 290 300 310 320 330 340 mKIAA1 QDNKCSWLVVQCLLRASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|148 QDNKCSWLVVQCLLRASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSY 330 340 350 360 370 380 350 360 370 mKIAA1 NRLKSLIEQCSAPLPPSIFMELANKIYKRRK ::::::::::::::::::::::::::::::: gi|148 NRLKSLIEQCSAPLPPSIFMELANKIYKRRK 390 400 410 420 >>gi|60392303|sp|Q920E5.1|FPPS_MOUSE RecName: Full=Farne (353 aa) initn: 2330 init1: 2330 opt: 2330 Z-score: 2908.0 bits: 546.7 E(): 2.9e-153 Smith-Waterman score: 2330; 100.000% identity (100.000% similar) in 353 aa overlap (24-376:1-353) 10 20 30 40 50 60 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE ::::::::::::::::::::::::::::::::::::: gi|603 MNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE 10 20 30 70 80 90 100 110 120 mKIAA1 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|603 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP 280 290 300 310 320 330 370 mKIAA1 PSIFMELANKIYKRRK :::::::::::::::: gi|603 PSIFMELANKIYKRRK 340 350 >>gi|74141499|dbj|BAE38529.1| unnamed protein product [M (353 aa) initn: 2324 init1: 2324 opt: 2324 Z-score: 2900.5 bits: 545.3 E(): 7.5e-153 Smith-Waterman score: 2324; 99.717% identity (100.000% similar) in 353 aa overlap (24-376:1-353) 10 20 30 40 50 60 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE ::::::::::::::::::::::::::::::::::::: gi|741 MNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE 10 20 30 70 80 90 100 110 120 mKIAA1 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 IGEAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP 280 290 300 310 320 330 370 mKIAA1 PSIFMELANKIYKRRK :::::::::::::::: gi|741 PSIFMELANKIYKRRK 340 350 >>gi|74183868|dbj|BAE24508.1| unnamed protein product [M (353 aa) initn: 2321 init1: 2321 opt: 2321 Z-score: 2896.7 bits: 544.6 E(): 1.2e-152 Smith-Waterman score: 2321; 99.717% identity (99.717% similar) in 353 aa overlap (24-376:1-353) 10 20 30 40 50 60 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE ::::::::::::::::::::::::::::::::::::: gi|741 MNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE 10 20 30 70 80 90 100 110 120 mKIAA1 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|741 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP :::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::: gi|741 ASPQQRQILEENYGQKDPGKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP 280 290 300 310 320 330 370 mKIAA1 PSIFMELANKIYKRRK :::::::::::::::: gi|741 PSIFMELANKIYKRRK 340 350 >>gi|56789674|gb|AAH87886.1| Farnesyl diphosphate synthe (353 aa) initn: 2316 init1: 2316 opt: 2316 Z-score: 2890.5 bits: 543.4 E(): 2.7e-152 Smith-Waterman score: 2316; 99.717% identity (99.717% similar) in 353 aa overlap (24-376:1-353) 10 20 30 40 50 60 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE ::::::::::::::::::::::::::::::::::::: gi|567 MNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE 10 20 30 70 80 90 100 110 120 mKIAA1 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|567 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|567 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|567 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR ::::::::::::::::::::::::::::::::::::::::::::::::: :::::::::: gi|567 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKSSWLVVQCLLR 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|567 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP 280 290 300 310 320 330 370 mKIAA1 PSIFMELANKIYKRRK :::::::::::::::: gi|567 PSIFMELANKIYKRRK 340 350 >>gi|149048094|gb|EDM00670.1| rCG62519, isoform CRA_b [R (420 aa) initn: 2258 init1: 2258 opt: 2258 Z-score: 2817.1 bits: 530.1 E(): 3.3e-148 Smith-Waterman score: 2258; 93.629% identity (98.615% similar) in 361 aa overlap (16-376:60-420) 10 20 30 40 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFS :::::::::::.::::..:::::::::::: gi|149 LQRPSLAYGCPVLGAWHSARWWCQVWTEEPRAFSSSVRMNGDQKLDVHNQEKQNFIQHFS 30 40 50 60 70 80 50 60 70 80 90 100 mKIAA1 QIVKVLTEKELGHPEIGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESL :::::::: :::::: ::::.:.:::::::..::::::::::::.:::::::.::::::: gi|149 QIVKVLTEDELGHPEKGDAITRIKEVLEYNTVGGKYNRGLTVVQTFQELVEPRKQDAESL 90 100 110 120 130 140 110 120 130 140 150 160 mKIAA1 QRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRL ::::::::::::::::::: ::::::: :::::::::::::::::::::::::::.:::: gi|149 QRALTVGWCVELLQAFFLVLDDIMDSSHTRRGQICWYQKPGIGLDAINDALLLEAAIYRL 150 160 170 180 190 200 170 180 190 200 210 220 mKIAA1 LKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTA :::::::::::::::::::::::::::::::::.:::::.:::::::::::::::::::: gi|149 LKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLITAPQGQVDLGRYTEKRYKSIVKYKTA 210 220 230 240 250 260 230 240 250 260 270 280 mKIAA1 FYSFYLPIAAAMYMAGIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDI ::::::::::::::::::::::::::::::.:::::::.::::::::::::::::::::: gi|149 FYSFYLPIAAAMYMAGIDGEKEHANALKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTDI 270 280 290 300 310 320 290 300 310 320 330 340 mKIAA1 QDNKCSWLVVQCLLRASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSY ::::::::::::::::.::::::::::::::::::::::::::: :::.:.::::::::: gi|149 QDNKCSWLVVQCLLRATPQQRQILEENYGQKDPEKVARVKALYEELDLRSVFFKYEEDSY 330 340 350 360 370 380 350 360 370 mKIAA1 NRLKSLIEQCSAPLPPSIFMELANKIYKRRK :::::::::::::::::::.::::::::::: gi|149 NRLKSLIEQCSAPLPPSIFLELANKIYKRRK 390 400 410 420 >>gi|120478|sp|P05369.2|FPPS_RAT RecName: Full=Farnesyl (353 aa) initn: 2213 init1: 2213 opt: 2213 Z-score: 2761.9 bits: 519.6 E(): 3.9e-145 Smith-Waterman score: 2213; 93.484% identity (98.584% similar) in 353 aa overlap (24-376:1-353) 10 20 30 40 50 60 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE :::.::::..:::::::::::::::::::: :::::: gi|120 MNGDQKLDVHNQEKQNFIQHFSQIVKVLTEDELGHPE 10 20 30 70 80 90 100 110 120 mKIAA1 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA ::::.:.:::::::..::::::::::::.:::::::.:::::::::::::::::::::: gi|120 KGDAITRIKEVLEYNTVGGKYNRGLTVVQTFQELVEPRKQDAESLQRALTVGWCVELLQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL :::: ::::::: :::::::::::::::::::::::::::.::::::::::::::::::: gi|120 FFLVLDDIMDSSYTRRGQICWYQKPGIGLDAINDALLLEAAIYRLLKFYCREQPYYLNLL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA ::::::::::::::::::.:::::.::::::::::::::::::::::::::::::::::: gi|120 ELFLQSSYQTEIGQTLDLITAPQGQVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR :::::::::::::::.:::::::.:::::::::::::::::::::::::::::::::::: gi|120 GIDGEKEHANALKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP :.::::::::::::::::::::::::::: :::.:.:::::::::::::::::::::::: gi|120 ATPQQRQILEENYGQKDPEKVARVKALYEELDLRSVFFKYEEDSYNRLKSLIEQCSAPLP 280 290 300 310 320 330 370 mKIAA1 PSIFMELANKIYKRRK ::::.::::::::::: gi|120 PSIFLELANKIYKRRK 340 350 >>gi|204092|gb|AAA41143.1| farnesyl pyrophosphate synthe (353 aa) initn: 2211 init1: 2211 opt: 2211 Z-score: 2759.4 bits: 519.2 E(): 5.4e-145 Smith-Waterman score: 2211; 93.484% identity (98.584% similar) in 353 aa overlap (24-376:1-353) 10 20 30 40 50 60 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE :::.::::..:::::::::::::::::::: :::::: gi|204 MNGDQKLDVHNQEKQNFIQHFSQIVKVLTEDELGHPE 10 20 30 70 80 90 100 110 120 mKIAA1 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA ::::.:.:::::::..::::::::::::.:::::::.:::::::::::::::::::::: gi|204 KGDAITRIKEVLEYNTVGGKYNRGLTVVQTFQELVEPRKQDAESLQRALTVGWCVELLQA 40 50 60 70 80 90 130 140 150 160 170 180 mKIAA1 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL :::: ::::::: :::::::::::::::::::::::::::.::::::::::::::::::: gi|204 FFLVLDDIMDSSHTRRGQICWYQKPGIGLDAINDALLLEAAIYRLLKFYCREQPYYLNLL 100 110 120 130 140 150 190 200 210 220 230 240 mKIAA1 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA ::::::::::::::::::.:::::.::::::::::::::::::::::::::::::::::: gi|204 ELFLQSSYQTEIGQTLDLITAPQGQVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA 160 170 180 190 200 210 250 260 270 280 290 300 mKIAA1 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR :::::::::::::::.:::::::.:::::::::::::::::::::::::::::::::::: gi|204 GIDGEKEHANALKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR 220 230 240 250 260 270 310 320 330 340 350 360 mKIAA1 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP :.::::::::::::::::::::::::::: :::.:.:::::::::::::::::::::::: gi|204 ATPQQRQILEENYGQKDPEKVARVKALYEELDLRSVFFKYEEDSYNRLKSLIEQCSAPLP 280 290 300 310 320 330 370 mKIAA1 PSIFMELANKIYKRRK ::::.::::::::::: gi|204 PSIFLELANKIYKRRK 340 350 >>gi|111305075|gb|AAI20219.1| FDPS protein [Bos taurus] (376 aa) initn: 2108 init1: 2065 opt: 2071 Z-score: 2584.3 bits: 486.9 E(): 3.1e-135 Smith-Waterman score: 2071; 82.834% identity (95.913% similar) in 367 aa overlap (10-376:10-376) 10 20 30 40 50 60 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFSQIVKVLTEKELGHPE . : .:::: ::.:.::.:::::: ::.:.::::::::::::::...:::: gi|111 EYPSNNLDLQPASRNRAFYSSLRVNGDQKLDAYAQERQDFIQHFSQIVKVLTEEDIGHPE 10 20 30 40 50 60 70 80 90 100 110 120 mKIAA1 IGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESLQRALTVGWCVELLQA :::::.::::::::::.::::::::::: .:.::::: ::: .::::::::::::::::: gi|111 IGDAITRLKEVLEYNAIGGKYNRGLTVVITFRELVEPGKQDPDSLQRALTVGWCVELLQA 70 80 90 100 110 120 130 140 150 160 170 180 mKIAA1 FFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRLLKFYCREQPYYLNLL :::::::::::::::::: ::::::::::::::::.:::.:::::::.:::::::::.:. gi|111 FFLVSDDIMDSSLTRRGQTCWYQKPGIGLDAINDAFLLESSIYRLLKLYCREQPYYLDLI 130 140 150 160 170 180 190 200 210 220 230 240 mKIAA1 ELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTAFYSFYLPIAAAMYMA ::::::::::::::::::.:::::.:::::.:::::::::::::::::::::.::::::: gi|111 ELFLQSSYQTEIGQTLDLITAPQGNVDLGRFTEKRYKSIVKYKTAFYSFYLPVAAAMYMA 190 200 210 220 230 240 250 260 270 280 290 300 mKIAA1 GIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDIQDNKCSWLVVQCLLR :::::::::.: :::.:::::::.::::::::::::.:::.::::::::::::::::: : gi|111 GIDGEKEHAHAKKILLEMGEFFQIQDDYLDLFGDPSMTGKIGTDIQDNKCSWLVVQCLQR 250 260 270 280 290 300 310 320 330 340 350 360 mKIAA1 ASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSYNRLKSLIEQCSAPLP :::.:::::.::::::. ::::::::::: ..:......:::::::.. .:::: .:::: gi|111 ASPEQRQILQENYGQKEAEKVARVKALYEEMNLSAVYMQYEEDSYNHIMGLIEQYAAPLP 310 320 330 340 350 360 370 mKIAA1 PSIFMELANKIYKRRK :.::. ::.:::::.: gi|111 PAIFLGLAQKIYKRKK 370 >>gi|109017246|ref|XP_001116071.1| PREDICTED: farnesyl d (419 aa) initn: 2099 init1: 2069 opt: 2069 Z-score: 2581.2 bits: 486.4 E(): 4.6e-135 Smith-Waterman score: 2069; 84.488% identity (95.291% similar) in 361 aa overlap (16-376:59-419) 10 20 30 40 mKIAA1 KPQTSWTPGESALKNRAFSSSVRMNGNQKLDAYNQEKQNFIQHFS ::. ::.::::.:: :.: ::::.:.:::: gi|109 SLRRPSLVHGYPVLAWHSARCWCQAWTEEPRALCSSLRMNGDQKSDVYAQEKQDFVQHFS 30 40 50 60 70 80 50 60 70 80 90 100 mKIAA1 QIVKVLTEKELGHPEIGDAIARLKEVLEYNALGGKYNRGLTVVQAFQELVEPKKQDAESL :::.:::: :.:::: :::::::::::::::.::::.:::::: ::.:::::.::::.:: gi|109 QIVRVLTEDEMGHPETGDAIARLKEVLEYNAIGGKYHRGLTVVVAFRELVEPRKQDADSL 90 100 110 120 130 140 110 120 130 140 150 160 mKIAA1 QRALTVGWCVELLQAFFLVSDDIMDSSLTRRGQICWYQKPGIGLDAINDALLLEASIYRL ::: :::::::::::::::.:::::::::::::::::::::.::::::::.:::: :::: gi|109 QRAWTVGWCVELLQAFFLVTDDIMDSSLTRRGQICWYQKPGVGLDAINDAILLEACIYRL 150 160 170 180 190 200 170 180 190 200 210 220 mKIAA1 LKFYCREQPYYLNLLELFLQSSYQTEIGQTLDLMTAPQGHVDLGRYTEKRYKSIVKYKTA ::.:::::::::::.::::::::::::::::::.:::::.:::::.:::::::::::::: gi|109 LKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLITAPQGNVDLGRFTEKRYKSIVKYKTA 210 220 230 240 250 260 230 240 250 260 270 280 mKIAA1 FYSFYLPIAAAMYMAGIDGEKEHANALKILMEMGEFFQVQDDYLDLFGDPSVTGKVGTDI :::::::::::::::::::::::::: :::.:::::::.::::::::::::::::::::: gi|109 FYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGKVGTDI 270 280 290 300 310 320 290 300 310 320 330 340 mKIAA1 QDNKCSWLVVQCLLRASPQQRQILEENYGQKDPEKVARVKALYEALDLQSAFFKYEEDSY ::::::::::::: ::.:.: :::.::::::. ::::::::::: ::::..:..:::::: gi|109 QDNKCSWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLQAVFLQYEEDSY 330 340 350 360 370 380 350 360 370 mKIAA1 NRLKSLIEQCSAPLPPSIFMELANKIYKRRK ... .:::: .:::::.::. :: :::::.: gi|109 SHIMALIEQYAAPLPPAIFLGLARKIYKRKK 390 400 410 376 residues in 1 query sequences 2727779818 residues in 7921681 library sequences Tcomplib [34.26] (2 proc) start: Fri Mar 13 14:16:01 2009 done: Fri Mar 13 14:22:18 2009 Total Scan time: 860.300 Total Display time: 0.090 Function used was FASTA [version 34.26.5 April 26, 2007]