FASTA searches a protein or DNA sequence data bank version 3.4t11 Apr 17, 2002 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 ../query/mKIAA3027.ptfa, 499 aa vs ./tmplib.26680 library 1768518 residues in 2168 sequences Expectation_n fit: rho(ln(x))= 6.6455+/-0.00528; mu= 6.1092+/- 0.351 mean_var=146.5724+/-34.307, 0's: 0 Z-trim: 2 B-trim: 25 in 1/35 Lambda= 0.1059 FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2168) mKIAA1095 ( 1052 res) mfj25249 (1052) 1122 183 7.5e-47 >>mKIAA1095 ( 1052 res) mfj25249 (1052 aa) initn: 1267 init1: 557 opt: 1122 Z-score: 933.5 bits: 183.3 E(): 7.5e-47 Smith-Waterman score: 1872; 60.078% identity (63.008% ungapped) in 516 aa overlap (3-499:542-1052) 10 20 30 mKIAA3 EEGTTDTATSSSNNQEKDSGVGRTDESLRNDE ::::::: ::..:::::::::::: :::: mKIAA1 LHMDMLEEQHHQAMQFTASVLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDE 520 530 540 550 560 570 40 50 60 70 80 mKIAA3 SSEQENAVEEPHSTT--LKSKRELGKSQDTLGSLEHQCS-ESCAGGECLDSD-CASNQEV :::::: :. ... : ..:.: ::::::: . : :: ...: : : . .. mKIAA1 SSEQENNGEDATASANPLAGQRKLTCSQDTLGSGDLPFSNESFISADCTDVDYLGIPEDE 580 590 600 610 620 630 90 100 110 120 130 140 mKIAA3 CEGFQQLLELK--IRNHGDYDLYYSSSTIEC-NRGEQDGVEHELQLLNEELRNIELECQN :: :..::::: ... . :.::: :: .. .... ..:..::.:::::::.::::: . mKIAA1 CERFRELLELKCQVQSASPYSLYYPSSPLDAAGKSDPESVDKELELLNEELRSIELECLS 640 650 660 670 680 690 150 160 170 180 190 200 mKIAA3 IMQAHRLQKVTDQYGDIWALHDGGFRNYNTSLDVQRGKLDDIMEHPEKSDKDSSSAYNTA :..::..:.. .:: . : :: .::::::::.::.: .:.:: : ::::::::::::::. mKIAA1 IVRAHKMQQLKEQYRESWMLHHSGFRNYNTSVDVRRHELSDITELPEKSDKDSSSAYNTG 700 710 720 730 740 750 210 220 230 240 250 mKIAA3 ESCRSTPLTVDRSPDSSLPRMINLTNKKNLRSMMTAHQSP---------PRQSTREYTST :::::::::.. :::.:: :. . ... .. . . :: :. :: :. . mKIAA1 ESCRSTPLTLEISPDNSLRRVAEGSSEGATANIEAYRPSPKNLLAITEDPEVSTPSYNPS 760 770 780 790 800 810 260 270 280 290 300 310 mKIAA3 KVKATDEGCSVESLEK-GLESSQLLDQEHTVSEHPPYLSPYHSSSYRYANIPAHARHYQS .: : . ..: :. : ..:. ... :: :: : :..:.:::::.:::: mKIAA1 -AKELDPSQALEIKERRGSDGSRSPTASPKLGN--AYLPSYHHSPYKHAHIPAHAQHYQS 820 830 840 850 860 320 330 340 350 360 370 mKIAA3 YMQLIQQKSAVEYAQSQLSLVSMCKE--SQRGSEPKMEWKVKIRSDGTRYITKRPVRDRL ::.::::::::::::::.:::::::. :. . ::.:::::::::::::::::::::::: mKIAA1 YMHLIQQKSAVEYAQSQMSLVSMCKDLNSSNSVEPRMEWKVKIRSDGTRYITKRPVRDRL 870 880 890 900 910 920 380 390 400 410 420 430 mKIAA3 LKERALKIKEERSGMTTDDDTMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMMRSRLES :.::::::.:::::.:::::.::::::::::::::::::::.::::::::::::.:::. mKIAA1 LRERALKIREERSGLTTDDDAMSEMKMGRYWSKEERKQHLVKAKEQRRRREFMMQSRLDC 930 940 950 960 970 980 440 450 460 470 480 490 mKIAA3 LKESPQSSGEGKKELSIIELSHKKMMKKRNKKILDNWMTIQELMTHGAKSPDGTRVHNAF ::: :.... .::..:.:::::::::::::::.:::::::::.:::.::::::::.:.: mKIAA1 LKE--QQASDDRKEMNILELSHKKMMKKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSF 990 1000 1010 1020 1030 1040 mKIAA3 LSVTTV :::::: mKIAA1 LSVTTV 1050 499 residues in 1 query sequences 1768518 residues in 2168 library sequences Scomplib [34t11] start: Mon Mar 27 10:58:53 2006 done: Mon Mar 27 10:58:54 2006 Scan time: 0.690 Display time: 0.030 Function used was FASTA [version 3.4t11 Apr 17, 2002]