FASTA searches a protein or DNA sequence data bank
 version 3.4t11 Apr 17, 2002
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 ../query/mKIAA1379.ptfa, 391 aa
 vs ./tmplib.26680 library

1768626 residues in  2168 sequences
  Expectation_n fit: rho(ln(x))= 5.4294+/-0.00654; mu= 13.5573+/- 0.437
 mean_var=212.7938+/-50.395, 0's: 0 Z-trim: 8  B-trim: 0 in 0/36
 Lambda= 0.0879

FASTA (3.45 Mar 2002) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                       opt bits E(2168)
mFLJ00395  ( 711 res)   msj07104                   ( 711)  188   37  0.0061


>>mFLJ00395  ( 711 res)   msj07104                        (711 aa)
 initn: 200 init1:  77 opt: 188  Z-score: 145.1  bits: 36.5 E(): 0.0061
Smith-Waterman score: 208;  23.058% identity (26.836% ungapped) in 412 aa overlap (26-391:312-711)

                    10        20        30        40        50     
mKIAA1      KAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNE
                                     ....::   .. . :  :...:..: :::.
mFLJ00 MGSTKVFVKNPESLFLLEEMRERKFDGFARTIQKAWRRHVA-VRKYEEMREEASNILLNK
             290       300       310       320        330       340

          60        70           80        90            100       
mKIAA1 DLEKVKNWQKDAYHKQIMG---GFKETKEAEDGFRKAQK-----PWAKKMKELEAAKKAY
            :. .... .....:   :..:  : .. . : ..       .:  ....  :.  
mFLJ00 -----KERRRNSINRNFVGDYLGLEERPELRQFLAKRERVDFADSVTKYDRRFKPIKRDL
                   350       360       370       380       390     

       110       120       130       140        150       160      
mKIAA1 HLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQ-DVQKTQEKYEKVLEDVGKT
        :. :   .   ....   :.... :  :: .: ..  :  ...  :. .  . :... .
mFLJ00 ILTPKCVYVIGREKVKRGPEKGLVREVLKKKLD-IQALRGVSLSTRQDDFFILQEEAADS
         400       410       420        430       440       450    

        170       180            190       200                210  
mKIAA1 TPQYMEGMEQVFEQCQQFEE--KR---LVFLKEVLLDIK---------RHLNLAENSSYM
         . .   : :   :..:::  .:   :.:   . . .:         :......... .
mFLJ00 FLESIFKTEFVSLLCKRFEEAARRPLPLTFSDLLQFRVKKEGWGGGSTRNVTFSRGTGDL
          460       470       480       490       500       510    

            220          230       240       250        260        
mKIAA1 HVYRELEQAIR---GADAQEDLRWFRSTSGPGMPMNWPQFE-EWNPDLPHTTAKKEKQPK
        : .   .:.    :    .. .  :.  . : :    :   .  :  :.   ..   :.
mFLJ00 AVLKAGGRALTISIGDGLPKSTKPTRKGLAQGRPRRSAQAPTRAAPGPPRGLNRNGVPPS
          520       530       540       550       560       570    

       270       280       290             300           310       
mKIAA1 -KAEGATLSNATGAVESTSQAGDRGSVSS------YDRGQ---TYATEWSD-DESG----
        ....  :  ..:    .::   ::  ::        :..    ..::. .  ..:    
mFLJ00 SQVRSLPLEITSG---RSSQRPPRGPPSSTLGASRRPRARPPSEHSTEFLNVPDQGVAGM
          580          590       600       610       620       630 

              320        330       340       350       360         
mKIAA1 ---NPFGGNEANGGANPF-EDDAKGVRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQG
            .:   . : . :  .  ..: : ::::.: ::. :::::.. .:. ..  :: .:
mFLJ00 QRKRSIGQRPVPGVGRPKPQPRTHGPRCRALYQYIGQDVDELSFNV-NEVIEILIEDSSG
             640       650       660       670        680       690

     370       380       390 
mKIAA1 WCRGRLDSGQLGLYPANYVEAI
       : .:::  :: ::.:.:::: :
mFLJ00 WWKGRLH-GQEGLFPGNYVEKI
               700       710 




391 residues in 1 query   sequences
1768626 residues in 2168 library sequences
 Scomplib [34t11]
 start: Mon Mar 27 10:42:51 2006 done: Mon Mar 27 10:42:52 2006
 Scan time:  0.610 Display time:  0.020

Function used was FASTA [version 3.4t11 Apr 17, 2002]